Spaces:
Configuration error
Configuration error
Upload 3 files
Browse files- app.py +590 -33
- default_model.zip +3 -0
app.py
CHANGED
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@@ -16,7 +16,9 @@ from ash_animator import create_grid
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pn.extension()
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-
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os.makedirs(MEDIA_DIR, exist_ok=True)
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# Logging setup
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@@ -69,12 +71,20 @@ def process_zip(event=None):
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status.object = "β
ZIP uploaded and saved."
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else:
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zip_path = os.path.join(MEDIA_DIR, "default_model.zip")
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if not os.path.exists(zip_path):
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status.object = "β No ZIP uploaded and default_model.zip not found."
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return
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status.object = "π¦ Using default_model.zip"
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shutil.rmtree(output_dir, ignore_errors=True)
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os.makedirs(output_dir, exist_ok=True)
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@@ -85,6 +95,10 @@ def process_zip(event=None):
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# animator_obj["3d"] = [xr.open_dataset(fp).load()
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# for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc")))]
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animator_obj["3d"] = []
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for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc"))):
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with xr.open_dataset(fp) as ds:
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@@ -125,7 +139,12 @@ def restore_previous_session():
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with open(state_file) as f:
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zip_path = f.read().strip()
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if os.path.exists(zip_path):
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animator_obj["3d"] = []
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for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc"))):
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@@ -249,35 +268,99 @@ def human_readable_size(size):
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size /= 1024
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return f"{size:.1f} TB"
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def generate_output_gallery(base_folder):
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for root, _, files in os.walk(os.path.join(MEDIA_DIR, base_folder)):
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for file in files:
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def update_media_tabs():
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media_tab_2d.objects[:] = [generate_output_gallery("2D")]
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@@ -291,6 +374,7 @@ media_tab = pn.Tabs(
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("3D Outputs", media_tab_3d)
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)
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tab3d = pn.Column(
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threshold_slider_3d, zoom_slider_3d, fps_slider_3d, Altitude_slider, cmap_select_3d,
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pn.widgets.Button(name="π Generate animation at selected altitude level", button_type="primary", on_click=lambda e: tab3d.append(plot_z_level())),
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@@ -306,14 +390,486 @@ tab2d = pn.Column(
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pn.widgets.Button(name="π§ Animate Wet Deposition Rate", button_type="primary", on_click=lambda e: tab2d.append(plot_2d_field("wet_deposition_rate"))),
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)
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tabs = pn.Tabs(
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("π§± 3D Field", tab3d),
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("π 2D Field", tab2d),
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-
("π Media Viewer", media_tab)
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restore_previous_session()
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@@ -321,4 +877,5 @@ pn.template.FastListTemplate(
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title="NAME Visualizer Dashboard",
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sidebar=sidebar,
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main=[tabs],
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-
).servable()
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pn.extension()
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+
import tempfile
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+
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MEDIA_DIR = os.environ.get("NAME_MEDIA_DIR", os.path.join(tempfile.gettempdir(), "name_media"))
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os.makedirs(MEDIA_DIR, exist_ok=True)
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# Logging setup
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status.object = "β
ZIP uploaded and saved."
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| 72 |
else:
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| 73 |
zip_path = os.path.join(MEDIA_DIR, "default_model.zip")
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| 74 |
+
if not os.path.exists(zip_path):
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+
zip_path = "default_model.zip" # fallback to local directory
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if not os.path.exists(zip_path):
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status.object = "β No ZIP uploaded and default_model.zip not found."
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return
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status.object = "π¦ Using default_model.zip"
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+
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+
try:
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output_dir = os.path.join("./", "ash_output")
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+
os.makedirs(output_dir, exist_ok=True)
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except PermissionError:
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output_dir = os.path.join(tempfile.gettempdir(), "name_output")
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os.makedirs(output_dir, exist_ok=True)
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shutil.rmtree(output_dir, ignore_errors=True)
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os.makedirs(output_dir, exist_ok=True)
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# animator_obj["3d"] = [xr.open_dataset(fp).load()
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# for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc")))]
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+
# animator_obj["3d"] = []
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+
# for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc"))):
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+
# with xr.open_dataset(fp) as ds:
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+
# animator_obj["3d"].append(ds.load())
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animator_obj["3d"] = []
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for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc"))):
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with xr.open_dataset(fp) as ds:
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with open(state_file) as f:
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| 140 |
zip_path = f.read().strip()
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| 141 |
if os.path.exists(zip_path):
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| 142 |
+
try:
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| 143 |
+
output_dir = os.path.join("./", "ash_output")
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| 144 |
+
os.makedirs(output_dir, exist_ok=True)
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| 145 |
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except PermissionError:
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| 146 |
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output_dir = os.path.join(tempfile.gettempdir(), "name_output")
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| 147 |
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os.makedirs(output_dir, exist_ok=True)
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animator_obj["3d"] = []
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for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc"))):
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size /= 1024
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| 269 |
return f"{size:.1f} TB"
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|
| 271 |
+
# def generate_output_gallery(base_folder):
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| 272 |
+
# grouped = defaultdict(lambda: defaultdict(list))
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| 273 |
+
# for root, _, files in os.walk(os.path.join(MEDIA_DIR, base_folder)):
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| 274 |
+
# for file in files:
|
| 275 |
+
# ext = os.path.splitext(file)[1].lower()
|
| 276 |
+
# subfolder = os.path.relpath(root, MEDIA_DIR)
|
| 277 |
+
# grouped[subfolder][ext].append(os.path.join(root, file))
|
| 278 |
+
|
| 279 |
+
# folder_tabs = []
|
| 280 |
+
# for subfolder, ext_files in sorted(grouped.items()):
|
| 281 |
+
# type_tabs = []
|
| 282 |
+
# for ext, paths in sorted(ext_files.items()):
|
| 283 |
+
# previews = []
|
| 284 |
+
# for path in sorted(paths, key=os.path.getmtime, reverse=True):
|
| 285 |
+
# size = human_readable_size(os.path.getsize(path))
|
| 286 |
+
# mod = datetime.fromtimestamp(os.path.getmtime(path)).strftime("%Y-%m-%d %H:%M")
|
| 287 |
+
# title = f"**{os.path.basename(path)}**\\n_{size}, {mod}_"
|
| 288 |
+
# download = pn.widgets.FileDownload(label="β¬", file=path, filename=os.path.basename(path), width=60)
|
| 289 |
+
# if ext in [".gif", ".png", ".jpg", ".jpeg"]:
|
| 290 |
+
# preview = pn.pane.Image(path, width=320)
|
| 291 |
+
# else:
|
| 292 |
+
# with open(path, "r", errors="ignore") as f:
|
| 293 |
+
# content = f.read(2048)
|
| 294 |
+
# preview = pn.pane.PreText(content, width=320)
|
| 295 |
+
# card = pn.Card(pn.pane.Markdown(title), preview, pn.Row(download), width=360)
|
| 296 |
+
# previews.append(card)
|
| 297 |
+
# type_tabs.append((ext.upper(), pn.GridBox(*previews, ncols=2)))
|
| 298 |
+
# folder_tabs.append((subfolder, pn.Tabs(*type_tabs)))
|
| 299 |
+
# return pn.Tabs(*folder_tabs)
|
| 300 |
+
|
| 301 |
+
|
| 302 |
def generate_output_gallery(base_folder):
|
| 303 |
+
preview_container = pn.Column(width=640, height=550)
|
| 304 |
+
preview_container.append(pn.pane.Markdown("π Click a thumbnail to preview"))
|
| 305 |
+
folder_cards = []
|
| 306 |
+
|
| 307 |
+
def make_preview(file_path):
|
| 308 |
+
ext = os.path.splitext(file_path)[1].lower()
|
| 309 |
+
title = pn.pane.Markdown(f"### {os.path.basename(file_path)}", width=640)
|
| 310 |
+
download_button = pn.widgets.FileDownload(file=file_path, filename=os.path.basename(file_path),
|
| 311 |
+
label="β¬ Download", button_type="success", width=150)
|
| 312 |
+
|
| 313 |
+
if ext in [".gif", ".png", ".jpg", ".jpeg"]:
|
| 314 |
+
content = pn.pane.Image(file_path, width=640, height=450, sizing_mode="fixed")
|
| 315 |
+
else:
|
| 316 |
+
try:
|
| 317 |
+
with open(file_path, 'r', errors="ignore") as f:
|
| 318 |
+
text = f.read(2048)
|
| 319 |
+
content = pn.pane.PreText(text, width=640, height=450)
|
| 320 |
+
except:
|
| 321 |
+
content = pn.pane.Markdown("*Unable to preview this file.*")
|
| 322 |
+
|
| 323 |
+
return pn.Column(title, content, download_button)
|
| 324 |
+
|
| 325 |
+
grouped = defaultdict(list)
|
| 326 |
for root, _, files in os.walk(os.path.join(MEDIA_DIR, base_folder)):
|
| 327 |
+
for file in sorted(files):
|
| 328 |
+
full_path = os.path.join(root, file)
|
| 329 |
+
if not os.path.exists(full_path):
|
| 330 |
+
continue
|
| 331 |
+
rel_folder = os.path.relpath(root, os.path.join(MEDIA_DIR, base_folder))
|
| 332 |
+
grouped[rel_folder].append(full_path)
|
| 333 |
+
|
| 334 |
+
for folder, file_paths in sorted(grouped.items()):
|
| 335 |
+
thumbnails = []
|
| 336 |
+
for full_path in file_paths:
|
| 337 |
+
filename = os.path.basename(full_path)
|
| 338 |
+
ext = os.path.splitext(full_path)[1].lower()
|
| 339 |
+
|
| 340 |
+
if ext in [".gif", ".png", ".jpg", ".jpeg"]:
|
| 341 |
+
img = pn.pane.Image(full_path, width=140, height=100)
|
| 342 |
+
else:
|
| 343 |
+
img = pn.pane.Markdown("π", width=140, height=100)
|
| 344 |
+
|
| 345 |
+
view_button = pn.widgets.Button(name="π", width=40, height=30, button_type="primary")
|
| 346 |
+
|
| 347 |
+
def click_handler(path=full_path):
|
| 348 |
+
def inner_click(event):
|
| 349 |
+
preview_container[:] = [make_preview(path)]
|
| 350 |
+
return inner_click
|
| 351 |
+
|
| 352 |
+
view_button.on_click(click_handler())
|
| 353 |
+
|
| 354 |
+
overlay = pn.Column(pn.Row(pn.Spacer(width=90), view_button), img, width=160)
|
| 355 |
+
label_md = pn.pane.Markdown(f"**{filename}**", width=140, height=35)
|
| 356 |
+
thumb_card = pn.Column(overlay, label_md, width=160)
|
| 357 |
+
thumbnails.append(thumb_card)
|
| 358 |
+
|
| 359 |
+
folder_card = pn.Card(pn.GridBox(*thumbnails, ncols=2), title=f"π {folder}", width=400, collapsible=True)
|
| 360 |
+
folder_cards.append(folder_card)
|
| 361 |
+
|
| 362 |
+
folder_scroll = pn.Column(*folder_cards, scroll=True, height=600, width=420)
|
| 363 |
+
return pn.Row(preview_container, pn.Spacer(width=20), folder_scroll)
|
| 364 |
|
| 365 |
def update_media_tabs():
|
| 366 |
media_tab_2d.objects[:] = [generate_output_gallery("2D")]
|
|
|
|
| 374 |
("3D Outputs", media_tab_3d)
|
| 375 |
)
|
| 376 |
|
| 377 |
+
|
| 378 |
tab3d = pn.Column(
|
| 379 |
threshold_slider_3d, zoom_slider_3d, fps_slider_3d, Altitude_slider, cmap_select_3d,
|
| 380 |
pn.widgets.Button(name="π Generate animation at selected altitude level", button_type="primary", on_click=lambda e: tab3d.append(plot_z_level())),
|
|
|
|
| 390 |
pn.widgets.Button(name="π§ Animate Wet Deposition Rate", button_type="primary", on_click=lambda e: tab2d.append(plot_2d_field("wet_deposition_rate"))),
|
| 391 |
)
|
| 392 |
|
| 393 |
+
help_tab = pn.Column(pn.pane.Markdown("""
|
| 394 |
+
## β How to Use the NAME Ash Visualizer
|
| 395 |
+
|
| 396 |
+
This dashboard allows users to upload and visualize outputs from the NAME ash dispersion model.
|
| 397 |
+
|
| 398 |
+
### π§ Workflow
|
| 399 |
+
1. **Upload ZIP** containing NetCDF files from the NAME model.
|
| 400 |
+
2. Use **3D and 2D tabs** to configure and generate animations.
|
| 401 |
+
3. Use **Media Viewer** to preview and download results.
|
| 402 |
+
|
| 403 |
+
### π§³ ZIP Structure
|
| 404 |
+
```
|
| 405 |
+
## π How Uploaded ZIP is Processed
|
| 406 |
+
|
| 407 |
+
```text
|
| 408 |
+
ββββββββββββββββββββββββββββββββββββββββββββββ
|
| 409 |
+
β Uploaded ZIP (.zip) β
|
| 410 |
+
β (e.g. Taal_273070_20200112_scenario_*.zip)β
|
| 411 |
+
ββββββββββββββββββββββββββββββββββββββββββββββ
|
| 412 |
+
β
|
| 413 |
+
βΌ
|
| 414 |
+
βββββββββββββββββββββββββββββββββ
|
| 415 |
+
β Contains: raw .txt outputs β
|
| 416 |
+
β - AQOutput_3DField_*.txt β
|
| 417 |
+
β - AQOutput_horizontal_*.txt β
|
| 418 |
+
βββββββββββββββββββββββββββββββββ
|
| 419 |
+
β
|
| 420 |
+
βΌ
|
| 421 |
+
ββββββββββββββββββββββββββββββββββββββββββ
|
| 422 |
+
β NAMEDataProcessor.batch_process_zip()β
|
| 423 |
+
ββββββββββββββββββββββββββββββββββββββββββ
|
| 424 |
+
β
|
| 425 |
+
βΌ
|
| 426 |
+
βββββββββββββββββββββββββββββββ
|
| 427 |
+
β Converts to NetCDF files β
|
| 428 |
+
β - ash_output/3D/*.nc β
|
| 429 |
+
β - ash_output/horizontal/*.nc β
|
| 430 |
+
βββββββββββββββββββββββββββββββ
|
| 431 |
+
β
|
| 432 |
+
βΌ
|
| 433 |
+
βββββββββββββββββββββββββββββββββββββββ
|
| 434 |
+
β View & animate in 3D/2D tabs β
|
| 435 |
+
β Download results in Media Viewer β
|
| 436 |
+
βββββββββββββββββββββββββββββββββββββββ
|
| 437 |
+
|
| 438 |
+
```
|
| 439 |
+
|
| 440 |
+
### π’ Tips
|
| 441 |
+
- Reset the app with π if needed.
|
| 442 |
+
- View logs if an error occurs.
|
| 443 |
+
- Outputs are temporary per session.
|
| 444 |
+
""", sizing_mode="stretch_width", width=800))
|
| 445 |
+
|
| 446 |
tabs = pn.Tabs(
|
| 447 |
("π§± 3D Field", tab3d),
|
| 448 |
("π 2D Field", tab2d),
|
| 449 |
+
("π Media Viewer", media_tab),
|
| 450 |
+
("β Help", help_tab)
|
| 451 |
+
)
|
| 452 |
+
|
| 453 |
+
sidebar = pn.Column(
|
| 454 |
+
pn.pane.Markdown("## π NAME Ash Visualizer", sizing_mode="stretch_width"),
|
| 455 |
+
pn.Card(pn.Column(file_input, process_button, reset_button, sizing_mode="stretch_width"),
|
| 456 |
+
title="π File Upload & Processing", collapsible=True, sizing_mode="stretch_width"),
|
| 457 |
+
pn.Card(pn.Column(download_button, log_link, sizing_mode="stretch_width"),
|
| 458 |
+
title="π Downloads & Logs", collapsible=True, sizing_mode="stretch_width"),
|
| 459 |
+
pn.Card(status, title="π’ Status", collapsible=True, sizing_mode="stretch_width"),
|
| 460 |
+
sizing_mode="stretch_width", width=300
|
| 461 |
+
)
|
| 462 |
+
|
| 463 |
+
restore_previous_session()
|
| 464 |
+
|
| 465 |
+
pn.template.FastListTemplate(
|
| 466 |
+
title="NAME Visualizer Dashboard",
|
| 467 |
+
sidebar=sidebar,
|
| 468 |
+
main=[tabs],
|
| 469 |
+
).servable()
|
| 470 |
+
|
| 471 |
+
'''
|
| 472 |
+
import os
|
| 473 |
+
import glob
|
| 474 |
+
import shutil
|
| 475 |
+
import io
|
| 476 |
+
import logging
|
| 477 |
+
import panel as pn
|
| 478 |
+
import xarray as xr
|
| 479 |
+
import numpy as np
|
| 480 |
+
from datetime import datetime
|
| 481 |
+
from types import SimpleNamespace
|
| 482 |
+
from collections import defaultdict
|
| 483 |
+
from ash_animator.converter import NAMEDataProcessor
|
| 484 |
+
from ash_animator.plot_3dfield_data import Plot_3DField_Data
|
| 485 |
+
from ash_animator.plot_horizontal_data import Plot_Horizontal_Data
|
| 486 |
+
from ash_animator import create_grid
|
| 487 |
+
import tempfile
|
| 488 |
+
|
| 489 |
+
pn.extension()
|
| 490 |
+
|
| 491 |
+
MEDIA_DIR = os.environ.get("NAME_MEDIA_DIR", os.path.join(tempfile.gettempdir(), "name_media"))
|
| 492 |
+
os.makedirs(MEDIA_DIR, exist_ok=True)
|
| 493 |
+
|
| 494 |
+
LOG_FILE = os.path.join(MEDIA_DIR, "app_errors.log")
|
| 495 |
+
logging.basicConfig(filename=LOG_FILE, level=logging.ERROR, format="%(asctime)s - %(levelname)s - %(message)s")
|
| 496 |
+
|
| 497 |
+
animator_obj = {}
|
| 498 |
+
|
| 499 |
+
file_input = pn.widgets.FileInput(accept=".zip")
|
| 500 |
+
process_button = pn.widgets.Button(name="π¦ Process ZIP", button_type="primary")
|
| 501 |
+
reset_button = pn.widgets.Button(name="π Reset App", button_type="danger")
|
| 502 |
+
status = pn.pane.Markdown("### Upload a NAME Model ZIP to begin")
|
| 503 |
+
|
| 504 |
+
download_button = pn.widgets.FileDownload(
|
| 505 |
+
label="β¬οΈ Download All Exports", filename="all_exports.zip", button_type="success",
|
| 506 |
+
callback=lambda: io.BytesIO(open(shutil.make_archive(os.path.join(MEDIA_DIR, "all_exports").replace(".zip", ""), "zip", MEDIA_DIR), 'rb').read())
|
| 507 |
)
|
| 508 |
|
| 509 |
+
log_link = pn.widgets.FileDownload(label="πͺ΅ View Error Log", file=LOG_FILE, filename="app_errors.log", button_type="warning")
|
| 510 |
+
|
| 511 |
+
threshold_slider_3d = pn.widgets.FloatSlider(name='3D Threshold', start=0.0, end=1.0, step=0.05, value=0.1)
|
| 512 |
+
zoom_slider_3d = pn.widgets.IntSlider(name='3D Zoom Level', start=1, end=20, value=19)
|
| 513 |
+
cmap_select_3d = pn.widgets.Select(name='3D Colormap', options=["rainbow", "viridis", "plasma"])
|
| 514 |
+
fps_slider_3d = pn.widgets.IntSlider(name='3D FPS', start=1, end=10, value=2)
|
| 515 |
+
Altitude_slider = pn.widgets.IntSlider(name='Define Ash Altitude', start=1, end=15, value=1)
|
| 516 |
+
|
| 517 |
+
threshold_slider_2d = pn.widgets.FloatSlider(name='2D Threshold', start=0.0, end=1.0, step=0.01, value=0.005)
|
| 518 |
+
zoom_slider_2d = pn.widgets.IntSlider(name='2D Zoom Level', start=1, end=20, value=19)
|
| 519 |
+
fps_slider_2d = pn.widgets.IntSlider(name='2D FPS', start=1, end=10, value=2)
|
| 520 |
+
cmap_select_2d = pn.widgets.Select(name='2D Colormap', options=["rainbow", "viridis", "plasma"])
|
| 521 |
+
|
| 522 |
+
def process_zip(event=None):
|
| 523 |
+
if file_input.value:
|
| 524 |
+
zip_path = os.path.join(MEDIA_DIR, file_input.filename)
|
| 525 |
+
with open(zip_path, "wb") as f:
|
| 526 |
+
f.write(file_input.value)
|
| 527 |
+
status.object = "β
ZIP uploaded and saved."
|
| 528 |
+
else:
|
| 529 |
+
zip_path = os.path.join(MEDIA_DIR, "default_model.zip")
|
| 530 |
+
if not os.path.exists(zip_path):
|
| 531 |
+
zip_path = "default_model.zip"
|
| 532 |
+
if not os.path.exists(zip_path):
|
| 533 |
+
status.object = "β No ZIP uploaded and default_model.zip not found."
|
| 534 |
+
return
|
| 535 |
+
status.object = "π¦ Using default_model.zip"
|
| 536 |
+
|
| 537 |
+
try:
|
| 538 |
+
output_dir = os.path.join("./", "ash_output")
|
| 539 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 540 |
+
except PermissionError:
|
| 541 |
+
output_dir = os.path.join(tempfile.gettempdir(), "name_output")
|
| 542 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 543 |
+
shutil.rmtree(output_dir, ignore_errors=True)
|
| 544 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 545 |
+
|
| 546 |
+
try:
|
| 547 |
+
processor = NAMEDataProcessor(output_root=output_dir)
|
| 548 |
+
processor.batch_process_zip(zip_path)
|
| 549 |
+
|
| 550 |
+
animator_obj["3d"] = [xr.open_dataset(fp).load() for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc")))]
|
| 551 |
+
animator_obj["2d"] = [xr.open_dataset(fp).load() for fp in sorted(glob.glob(os.path.join(output_dir, "horizontal", "*.nc")))]
|
| 552 |
+
|
| 553 |
+
with open(os.path.join(MEDIA_DIR, "last_run.txt"), "w") as f:
|
| 554 |
+
f.write(zip_path)
|
| 555 |
+
|
| 556 |
+
status.object += f" | β
Loaded 3D: {len(animator_obj['3d'])} & 2D: {len(animator_obj['2d'])}"
|
| 557 |
+
update_media_tabs()
|
| 558 |
+
except Exception as e:
|
| 559 |
+
logging.exception("Error during ZIP processing")
|
| 560 |
+
status.object = f"β Processing failed: {e}"
|
| 561 |
|
| 562 |
+
def reset_app(event=None):
|
| 563 |
+
animator_obj.clear()
|
| 564 |
+
file_input.value = None
|
| 565 |
+
status.object = "π App has been reset."
|
| 566 |
+
for folder in ["ash_output", "2D", "3D"]:
|
| 567 |
+
shutil.rmtree(os.path.join(MEDIA_DIR, folder), ignore_errors=True)
|
| 568 |
+
if os.path.exists(os.path.join(MEDIA_DIR, "last_run.txt")):
|
| 569 |
+
os.remove(os.path.join(MEDIA_DIR, "last_run.txt"))
|
| 570 |
+
update_media_tabs()
|
| 571 |
+
|
| 572 |
+
def restore_previous_session():
|
| 573 |
+
try:
|
| 574 |
+
state_file = os.path.join(MEDIA_DIR, "last_run.txt")
|
| 575 |
+
if os.path.exists(state_file):
|
| 576 |
+
with open(state_file) as f:
|
| 577 |
+
zip_path = f.read().strip()
|
| 578 |
+
if os.path.exists(zip_path):
|
| 579 |
+
output_dir = os.path.join("./", "ash_output")
|
| 580 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 581 |
+
animator_obj["3d"] = [xr.open_dataset(fp).load() for fp in sorted(glob.glob(os.path.join(output_dir, "3D", "*.nc")))]
|
| 582 |
+
animator_obj["2d"] = [xr.open_dataset(fp).load() for fp in sorted(glob.glob(os.path.join(output_dir, "horizontal", "*.nc")))]
|
| 583 |
+
status.object = f"π Restored previous session from {os.path.basename(zip_path)}"
|
| 584 |
+
update_media_tabs()
|
| 585 |
+
except Exception as e:
|
| 586 |
+
logging.exception("Error restoring previous session")
|
| 587 |
+
status.object = f"β οΈ Could not restore previous session: {e}"
|
| 588 |
+
|
| 589 |
+
process_button.on_click(process_zip)
|
| 590 |
+
reset_button.on_click(reset_app)
|
| 591 |
+
|
| 592 |
+
def build_animator_3d():
|
| 593 |
+
ds = animator_obj["3d"]
|
| 594 |
+
attrs = ds[0].attrs
|
| 595 |
+
lons, lats, grid = create_grid(attrs)
|
| 596 |
+
return SimpleNamespace(datasets=ds, levels=ds[0].altitude.values, lons=lons, lats=lats,
|
| 597 |
+
lon_grid=grid[0], lat_grid=grid[1])
|
| 598 |
+
|
| 599 |
+
def build_animator_2d():
|
| 600 |
+
ds = animator_obj["2d"]
|
| 601 |
+
lat_grid, lon_grid = xr.broadcast(ds[0]["latitude"], ds[0]["longitude"])
|
| 602 |
+
return SimpleNamespace(datasets=ds, lats=ds[0]["latitude"].values,
|
| 603 |
+
lons=ds[0]["longitude"].values,
|
| 604 |
+
lat_grid=lat_grid.values, lon_grid=lon_grid.values)
|
| 605 |
+
|
| 606 |
+
def plot_z_level():
|
| 607 |
+
try:
|
| 608 |
+
animator = build_animator_3d()
|
| 609 |
+
out = os.path.join(MEDIA_DIR, "3D")
|
| 610 |
+
os.makedirs(out, exist_ok=True)
|
| 611 |
+
Plot_3DField_Data(animator, out, cmap_select_3d.value, threshold_slider_3d.value,
|
| 612 |
+
zoom_slider_3d.value, fps_slider_3d.value).plot_single_z_level(
|
| 613 |
+
Altitude_slider.value, f"ash_altitude{Altitude_slider.value}km_runTimes.gif")
|
| 614 |
+
update_media_tabs()
|
| 615 |
+
status.object = "β
Z-Level animation created."
|
| 616 |
+
except Exception as e:
|
| 617 |
+
logging.exception("Error in plot_z_level")
|
| 618 |
+
status.object = f"β Error in Z-Level animation: {e}"
|
| 619 |
+
|
| 620 |
+
def plot_vertical_profile():
|
| 621 |
+
try:
|
| 622 |
+
animator = build_animator_3d()
|
| 623 |
+
out = os.path.join(MEDIA_DIR, "3D")
|
| 624 |
+
os.makedirs(out, exist_ok=True)
|
| 625 |
+
Plot_3DField_Data(animator, out, cmap_select_3d.value, fps_slider_3d.value,
|
| 626 |
+
threshold_slider_3d.value, zoom_level=zoom_slider_3d.value).plot_vertical_profile_at_time(
|
| 627 |
+
Altitude_slider.value - 1, f"T{Altitude_slider.value - 1}_profile.gif")
|
| 628 |
+
update_media_tabs()
|
| 629 |
+
status.object = "β
Vertical profile animation created."
|
| 630 |
+
except Exception as e:
|
| 631 |
+
logging.exception("Error in plot_vertical_profile")
|
| 632 |
+
status.object = f"β Error in vertical profile animation: {e}"
|
| 633 |
+
|
| 634 |
+
def animate_all_altitude_profiles():
|
| 635 |
+
try:
|
| 636 |
+
animator = build_animator_3d()
|
| 637 |
+
out = os.path.join(MEDIA_DIR, "3D")
|
| 638 |
+
Plot_3DField_Data(animator, out, cmap_select_3d.value, threshold_slider_3d.value,
|
| 639 |
+
zoom_slider_3d.value).animate_all_altitude_profiles()
|
| 640 |
+
update_media_tabs()
|
| 641 |
+
status.object = "β
All altitude profile animations created."
|
| 642 |
+
except Exception as e:
|
| 643 |
+
logging.exception("Error in animate_all_altitude_profiles")
|
| 644 |
+
status.object = f"β Error animating all altitude profiles: {e}"
|
| 645 |
+
|
| 646 |
+
def export_jpg_frames():
|
| 647 |
+
try:
|
| 648 |
+
animator = build_animator_3d()
|
| 649 |
+
out = os.path.join(MEDIA_DIR, "3D")
|
| 650 |
+
Plot_3DField_Data(animator, out, cmap_select_3d.value, threshold_slider_3d.value,
|
| 651 |
+
zoom_slider_3d.value).export_frames_as_jpgs(include_metadata=True)
|
| 652 |
+
update_media_tabs()
|
| 653 |
+
status.object = "β
JPG frames exported."
|
| 654 |
+
except Exception as e:
|
| 655 |
+
logging.exception("Error exporting JPG frames")
|
| 656 |
+
status.object = f"β Error exporting JPG frames: {e}"
|
| 657 |
+
|
| 658 |
+
def plot_2d_field(field):
|
| 659 |
+
try:
|
| 660 |
+
animator = build_animator_2d()
|
| 661 |
+
out = os.path.join(MEDIA_DIR, "2D")
|
| 662 |
+
Plot_Horizontal_Data(animator, out, cmap_select_2d.value, fps_slider_2d.value,
|
| 663 |
+
include_metadata=True, threshold=threshold_slider_2d.value,
|
| 664 |
+
zoom_width_deg=6.0, zoom_height_deg=6.0,
|
| 665 |
+
zoom_level=zoom_slider_2d.value,
|
| 666 |
+
static_frame_export=True).plot_single_field_over_time(field, f"{field}.gif")
|
| 667 |
+
update_media_tabs()
|
| 668 |
+
status.object = f"β
2D field `{field}` animation created."
|
| 669 |
+
except Exception as e:
|
| 670 |
+
logging.exception(f"Error in plot_2d_field: {field}")
|
| 671 |
+
status.object = f"β Error in 2D field `{field}` animation: {e}"
|
| 672 |
+
|
| 673 |
+
def human_readable_size(size):
|
| 674 |
+
for unit in ['B', 'KB', 'MB', 'GB']:
|
| 675 |
+
if size < 1024: return f"{size:.1f} {unit}"
|
| 676 |
+
size /= 1024
|
| 677 |
+
return f"{size:.1f} TB"
|
| 678 |
+
|
| 679 |
+
# def generate_output_gallery(base_folder):
|
| 680 |
+
# grouped = defaultdict(lambda: defaultdict(list))
|
| 681 |
+
# for root, _, files in os.walk(os.path.join(MEDIA_DIR, base_folder)):
|
| 682 |
+
# for file in files:
|
| 683 |
+
# ext = os.path.splitext(file)[1].lower()
|
| 684 |
+
# subfolder = os.path.relpath(root, MEDIA_DIR)
|
| 685 |
+
# grouped[subfolder][ext].append(os.path.join(root, file))
|
| 686 |
+
|
| 687 |
+
# folder_panels = []
|
| 688 |
+
# for subfolder, ext_files in sorted(grouped.items()):
|
| 689 |
+
# section = []
|
| 690 |
+
# for ext, paths in sorted(ext_files.items()):
|
| 691 |
+
# previews = []
|
| 692 |
+
# for path in sorted(paths, key=os.path.getmtime, reverse=True):
|
| 693 |
+
# size = human_readable_size(os.path.getsize(path))
|
| 694 |
+
# mod = datetime.fromtimestamp(os.path.getmtime(path)).strftime("%Y-%m-%d %H:%M")
|
| 695 |
+
# title = f"**{os.path.basename(path)}**\n_{size}, {mod}_"
|
| 696 |
+
# download = pn.widgets.FileDownload(label="β¬", file=path, filename=os.path.basename(path), width=60)
|
| 697 |
+
# if ext in [".gif", ".png", ".jpg", ".jpeg"]:
|
| 698 |
+
# preview = pn.pane.Image(path, width=320)
|
| 699 |
+
# else:
|
| 700 |
+
# with open(path, "r", errors="ignore") as f:
|
| 701 |
+
# content = f.read(2048)
|
| 702 |
+
# preview = pn.pane.PreText(content, width=320)
|
| 703 |
+
# card = pn.Card(pn.pane.Markdown(title), preview, pn.Row(download), width=360)
|
| 704 |
+
# previews.append(card)
|
| 705 |
+
# section.append(pn.Column(f"### {ext.upper()}", pn.GridBox(*previews, ncols=2)))
|
| 706 |
+
# folder_section = pn.Card(f"π {subfolder}", *section, collapsible=True, width_policy="max")
|
| 707 |
+
# folder_panels.append(folder_section)
|
| 708 |
+
|
| 709 |
+
# return pn.Column(*folder_panels, height=600, scroll=True, sizing_mode='stretch_width', styles={'overflow': 'auto'})
|
| 710 |
+
|
| 711 |
+
|
| 712 |
+
|
| 713 |
+
def generate_output_gallery(base_folder):
|
| 714 |
+
preview_container = pn.Column(width=640, height=550)
|
| 715 |
+
preview_container.append(pn.pane.Markdown("π Click a thumbnail to preview"))
|
| 716 |
+
folder_cards = []
|
| 717 |
+
|
| 718 |
+
def make_preview(file_path):
|
| 719 |
+
ext = os.path.splitext(file_path)[1].lower()
|
| 720 |
+
title = pn.pane.Markdown(f"### {os.path.basename(file_path)}", width=640)
|
| 721 |
+
download_button = pn.widgets.FileDownload(file=file_path, filename=os.path.basename(file_path),
|
| 722 |
+
label="β¬ Download", button_type="success", width=150)
|
| 723 |
+
|
| 724 |
+
if ext in [".gif", ".png", ".jpg", ".jpeg"]:
|
| 725 |
+
content = pn.pane.Image(file_path, width=640, height=450, sizing_mode="fixed")
|
| 726 |
+
else:
|
| 727 |
+
try:
|
| 728 |
+
with open(file_path, 'r', errors="ignore") as f:
|
| 729 |
+
text = f.read(2048)
|
| 730 |
+
content = pn.pane.PreText(text, width=640, height=450)
|
| 731 |
+
except:
|
| 732 |
+
content = pn.pane.Markdown("*Unable to preview this file.*")
|
| 733 |
+
|
| 734 |
+
return pn.Column(title, content, download_button)
|
| 735 |
+
|
| 736 |
+
grouped = defaultdict(list)
|
| 737 |
+
for root, _, files in os.walk(os.path.join(MEDIA_DIR, base_folder)):
|
| 738 |
+
for file in sorted(files):
|
| 739 |
+
full_path = os.path.join(root, file)
|
| 740 |
+
if not os.path.exists(full_path):
|
| 741 |
+
continue
|
| 742 |
+
rel_folder = os.path.relpath(root, os.path.join(MEDIA_DIR, base_folder))
|
| 743 |
+
grouped[rel_folder].append(full_path)
|
| 744 |
+
|
| 745 |
+
for folder, file_paths in sorted(grouped.items()):
|
| 746 |
+
thumbnails = []
|
| 747 |
+
for full_path in file_paths:
|
| 748 |
+
filename = os.path.basename(full_path)
|
| 749 |
+
ext = os.path.splitext(full_path)[1].lower()
|
| 750 |
+
|
| 751 |
+
if ext in [".gif", ".png", ".jpg", ".jpeg"]:
|
| 752 |
+
img = pn.pane.Image(full_path, width=140, height=100)
|
| 753 |
+
else:
|
| 754 |
+
img = pn.pane.Markdown("π", width=140, height=100)
|
| 755 |
+
|
| 756 |
+
view_button = pn.widgets.Button(name="π", width=40, height=30, button_type="primary")
|
| 757 |
+
|
| 758 |
+
def click_handler(path=full_path):
|
| 759 |
+
def inner_click(event):
|
| 760 |
+
preview_container[:] = [make_preview(path)]
|
| 761 |
+
return inner_click
|
| 762 |
+
|
| 763 |
+
view_button.on_click(click_handler())
|
| 764 |
+
|
| 765 |
+
overlay = pn.Column(pn.Row(pn.Spacer(width=90), view_button), img, width=160)
|
| 766 |
+
label_md = pn.pane.Markdown(f"**{filename}**", width=140, height=35)
|
| 767 |
+
thumb_card = pn.Column(overlay, label_md, width=160)
|
| 768 |
+
thumbnails.append(thumb_card)
|
| 769 |
+
|
| 770 |
+
folder_card = pn.Card(pn.GridBox(*thumbnails, ncols=2), title=f"π {folder}", width=400, collapsible=True)
|
| 771 |
+
folder_cards.append(folder_card)
|
| 772 |
+
|
| 773 |
+
folder_scroll = pn.Column(*folder_cards, scroll=True, height=600, width=420)
|
| 774 |
+
return pn.Row(preview_container, pn.Spacer(width=20), folder_scroll)
|
| 775 |
+
|
| 776 |
+
def update_media_tabs():
|
| 777 |
+
media_tab_2d.objects[:] = [generate_output_gallery("2D")]
|
| 778 |
+
media_tab_3d.objects[:] = [generate_output_gallery("3D")]
|
| 779 |
+
|
| 780 |
+
media_tab_2d = pn.Column(generate_output_gallery("2D"))
|
| 781 |
+
media_tab_3d = pn.Column(generate_output_gallery("3D"))
|
| 782 |
+
|
| 783 |
+
media_tab = pn.Tabs(
|
| 784 |
+
("πΌ 2D Output Gallery", media_tab_2d),
|
| 785 |
+
("πΌ 3D Output Gallery", media_tab_3d),
|
| 786 |
+
dynamic=True
|
| 787 |
+
)
|
| 788 |
+
|
| 789 |
+
tab3d = pn.Column(
|
| 790 |
+
threshold_slider_3d, zoom_slider_3d, fps_slider_3d, Altitude_slider, cmap_select_3d,
|
| 791 |
+
pn.widgets.Button(name="π Generate animation at selected altitude level", button_type="primary", on_click=lambda e: tab3d.append(plot_z_level())),
|
| 792 |
+
pn.widgets.Button(name="π Generate vertical profile animation at time index", button_type="primary", on_click=lambda e: tab3d.append(plot_vertical_profile())),
|
| 793 |
+
pn.widgets.Button(name="π Generate all altitude level animations", button_type="primary", on_click=lambda e: tab3d.append(animate_all_altitude_profiles())),
|
| 794 |
+
pn.widgets.Button(name="πΌ Export all animation frames as JPG", button_type="primary", on_click=lambda e: tab3d.append(export_jpg_frames())),
|
| 795 |
+
)
|
| 796 |
+
|
| 797 |
+
tab2d = pn.Column(
|
| 798 |
+
threshold_slider_2d, zoom_slider_2d, fps_slider_2d, cmap_select_2d,
|
| 799 |
+
pn.widgets.Button(name="π« Animate Air Concentration", button_type="primary", on_click=lambda e: tab2d.append(plot_2d_field("air_concentration"))),
|
| 800 |
+
pn.widgets.Button(name="π§ Animate Dry Deposition Rate", button_type="primary", on_click=lambda e: tab2d.append(plot_2d_field("dry_deposition_rate"))),
|
| 801 |
+
pn.widgets.Button(name="π§ Animate Wet Deposition Rate", button_type="primary", on_click=lambda e: tab2d.append(plot_2d_field("wet_deposition_rate"))),
|
| 802 |
+
)
|
| 803 |
+
|
| 804 |
+
help_tab = pn.Column(pn.pane.Markdown("""
|
| 805 |
+
## β How to Use the NAME Ash Visualizer
|
| 806 |
+
|
| 807 |
+
This dashboard allows users to upload and visualize outputs from the NAME ash dispersion model.
|
| 808 |
+
|
| 809 |
+
### π§ Workflow
|
| 810 |
+
1. **Upload ZIP** containing NetCDF files from the NAME model.
|
| 811 |
+
2. Use **3D and 2D tabs** to configure and generate animations.
|
| 812 |
+
3. Use **Media Viewer** to preview and download results.
|
| 813 |
+
|
| 814 |
+
### π§³ ZIP Structure
|
| 815 |
+
```
|
| 816 |
+
## π How Uploaded ZIP is Processed
|
| 817 |
+
|
| 818 |
+
```text
|
| 819 |
+
ββββββββββββββββββββββββββββββββββββββββββββββ
|
| 820 |
+
β Uploaded ZIP (.zip) β
|
| 821 |
+
β (e.g. Taal_273070_20200112_scenario_*.zip)β
|
| 822 |
+
ββββββββββββββββββββββββββββββββββββββββββββββ
|
| 823 |
+
β
|
| 824 |
+
βΌ
|
| 825 |
+
βββββββββββββββββββββββββββββββββ
|
| 826 |
+
β Contains: raw .txt outputs β
|
| 827 |
+
β - AQOutput_3DField_*.txt β
|
| 828 |
+
β - AQOutput_horizontal_*.txt β
|
| 829 |
+
βββββββββββββββββββββββββββββββββ
|
| 830 |
+
β
|
| 831 |
+
βΌ
|
| 832 |
+
ββββββββββββββββββββββββββββββββοΏ½οΏ½οΏ½βββββββββ
|
| 833 |
+
β NAMEDataProcessor.batch_process_zip()β
|
| 834 |
+
ββββββββββββββββββββββββββββββββββββββββββ
|
| 835 |
+
β
|
| 836 |
+
βΌ
|
| 837 |
+
βββββββββββββββββββββββββββββββ
|
| 838 |
+
β Converts to NetCDF files β
|
| 839 |
+
β - ash_output/3D/*.nc β
|
| 840 |
+
β - ash_output/horizontal/*.nc β
|
| 841 |
+
βββββββββββββββββββββββββββββββ
|
| 842 |
+
β
|
| 843 |
+
βΌ
|
| 844 |
+
βββββββββββββββββββββββββββββββββββββββ
|
| 845 |
+
β View & animate in 3D/2D tabs β
|
| 846 |
+
β Download results in Media Viewer β
|
| 847 |
+
βββββββββββββββββββββββββββββββββββββββ
|
| 848 |
+
|
| 849 |
+
```
|
| 850 |
+
|
| 851 |
+
### π’ Tips
|
| 852 |
+
- Reset the app with π if needed.
|
| 853 |
+
- View logs if an error occurs.
|
| 854 |
+
- Outputs are temporary per session.
|
| 855 |
+
""", sizing_mode="stretch_width", width=800))
|
| 856 |
+
|
| 857 |
+
tabs = pn.Tabs(
|
| 858 |
+
("π§± 3D Field", tab3d),
|
| 859 |
+
("π 2D Field", tab2d),
|
| 860 |
+
("π Media Viewer", media_tab),
|
| 861 |
+
("β Help", help_tab)
|
| 862 |
+
)
|
| 863 |
+
|
| 864 |
+
sidebar = pn.Column(
|
| 865 |
+
pn.pane.Markdown("## π NAME Ash Visualizer", sizing_mode="stretch_width"),
|
| 866 |
+
pn.Card(pn.Column(file_input, process_button, reset_button, sizing_mode="stretch_width"),
|
| 867 |
+
title="π File Upload & Processing", collapsible=True, sizing_mode="stretch_width"),
|
| 868 |
+
pn.Card(pn.Column(download_button, log_link, sizing_mode="stretch_width"),
|
| 869 |
+
title="π Downloads & Logs", collapsible=True, sizing_mode="stretch_width"),
|
| 870 |
+
pn.Card(status, title="π’ Status", collapsible=True, sizing_mode="stretch_width"),
|
| 871 |
+
sizing_mode="stretch_width", width=300
|
| 872 |
+
)
|
| 873 |
|
| 874 |
restore_previous_session()
|
| 875 |
|
|
|
|
| 877 |
title="NAME Visualizer Dashboard",
|
| 878 |
sidebar=sidebar,
|
| 879 |
main=[tabs],
|
| 880 |
+
).servable()
|
| 881 |
+
'''
|
default_model.zip
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9bb340a75132c3008a149557ff85f8bc05b4a46e70eee027503e30b9573fdd39
|
| 3 |
+
size 181349
|