radiology-api / tests /create_reports.py
MakPr016
Updated response and returning proper summary
ed38d82
import pandas as pd
from reportlab.lib.pagesizes import letter
from reportlab.lib import colors
from reportlab.lib.units import inch
from reportlab.platypus import SimpleDocTemplate, Table, TableStyle, Paragraph, Spacer, Image, PageBreak
from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
from reportlab.lib.enums import TA_CENTER, TA_LEFT
from datetime import datetime
import random
import os
reports_df = pd.read_csv('indiana_reports.csv')
projections_df = pd.read_csv('indiana_projections.csv')
def header_footer(canvas, doc):
canvas.saveState()
canvas.setFillColor(colors.HexColor('#1a365d'))
canvas.setFont('Helvetica-Bold', 14)
canvas.drawString(0.75*inch, letter[1] - 0.5*inch, "ST. LUKE'S MEDICAL CENTER")
canvas.setFont('Helvetica', 9)
canvas.setFillColor(colors.HexColor('#4a5568'))
canvas.drawString(0.75*inch, letter[1] - 0.65*inch, "Global City • We love life")
canvas.setFont('Helvetica-Bold', 11)
canvas.setFillColor(colors.HexColor('#2b6cb0'))
canvas.drawRightString(letter[0] - 0.75*inch, letter[1] - 0.5*inch, "DIAGNOSTIC X-RAY")
canvas.setStrokeColor(colors.HexColor('#e2e8f0'))
canvas.setLineWidth(0.5)
canvas.line(0.75*inch, letter[1] - 0.75*inch, letter[0] - 0.75*inch, letter[1] - 0.75*inch)
canvas.setFont('Helvetica', 8)
canvas.setFillColor(colors.HexColor('#718096'))
canvas.drawCentredString(letter[0]/2, 0.5*inch,
f"Page {doc.page} of 2 | Validated: {datetime.now().strftime('%d-%b-%Y %I:%M %p')}")
canvas.drawCentredString(letter[0]/2, 0.35*inch,
"This report has been electronically signed and validated. No signature is required.")
canvas.restoreState()
def create_radiology_report(uid, report_row, output_filename, report_num):
doc = SimpleDocTemplate(output_filename, pagesize=letter, rightMargin=0.75*inch, leftMargin=0.75*inch,
topMargin=1*inch, bottomMargin=0.8*inch)
story = []
styles = getSampleStyleSheet()
section_style = ParagraphStyle(
'Section',
parent=styles['Heading2'],
fontSize=11,
textColor=colors.HexColor('#1a365d'),
spaceAfter=6,
spaceBefore=10,
fontName='Helvetica-Bold'
)
body_style = ParagraphStyle(
'Body',
parent=styles['Normal'],
fontSize=10,
leading=14,
textColor=colors.HexColor('#2d3748'),
alignment=TA_LEFT
)
patient_id = f"{random.randint(1000000000, 9999999999)}"
exam_date = datetime.now().strftime("%d-%b-%Y")
exam_time = datetime.now().strftime("%I:%M %p")
dob = f"{random.randint(1,28)}-{random.choice(['JAN','FEB','MAR','APR','MAY','JUN','JUL','AUG','SEP'])}-{random.randint(1950,2000)}"
age = random.randint(25,85)
gender = random.choice(['M', 'F'])
print(f"\n{'='*70}")
print(f" REPORT #{report_num} - UID: {uid}")
print(f"{'='*70}")
print(f" Patient ID: {patient_id}")
print(f" Exam Date: {exam_date} {exam_time}")
print(f" Age/Gender: {age}Y / {gender}")
projection_rows_list = projections_df[projections_df['uid'] == uid]
print(f" Images Expected: {len(projection_rows_list)}")
images_found_count = 0
for idx, proj_row in projection_rows_list.iterrows():
filename = proj_row['filename']
image_path = f"images/{filename}"
if os.path.exists(image_path):
exists = "✓"
images_found_count += 1
else:
exists = "✗"
print(f" {exists} {filename}")
indication = report_row.get('indication', '')
findings = report_row.get('findings', '')
impression = report_row.get('impression', '')
print(f"\n History: {str(indication)[:60]}..." if len(str(indication)) > 60 else f"\n History: {indication}")
print(f" Findings: {str(findings)[:60]}..." if len(str(findings)) > 60 else f" Findings: {findings}")
print(f" Impression: {str(impression)[:60]}..." if len(str(impression)) > 60 else f" Impression: {impression}")
patient_name = random.choice(['DE LEON, Debbie Dichoco', 'SANTOS, Maria Clara', 'CRUZ, Juan Pedro', 'SOLOMON, Jannica Mica Estolano'])
referring_physician = random.choice(['ANG, SAMUEL DEE M.D.', 'REYES, MARIA SANTOS M.D.', 'CRUZ, JOSE ANTONIO M.D.'])
patient_info = [
['', '', Paragraph(f"<b>DATE OF BIRTH:</b>", body_style), Paragraph(dob, body_style), Paragraph(f"<b>AGE:</b>", body_style), Paragraph(f"{age} year/s", body_style)],
[Paragraph(f"<b>{patient_id}</b>", body_style), '', '', '', Paragraph(f"<b>GENDER:</b>", body_style), Paragraph(gender, body_style)],
[Paragraph(f"<b>{patient_name}</b>", body_style), '', '', '', '', ''],
[Paragraph(f"<b>ROOM/BED:</b>", body_style), Paragraph("OutPatient", body_style),
Paragraph(f"<b>REFERRING<br/>PHYSICIAN:</b>", body_style), Paragraph(referring_physician, body_style),
Paragraph(f"<b>DATE/TIME OF<br/>EXAM:</b>", body_style), Paragraph(f"{exam_date}<br/>{exam_time}", body_style)],
['', '', '', '', Paragraph(f"<b>DATE/TIME OF<br/>REQUEST:</b>", body_style), Paragraph(f"{exam_date}<br/>{exam_time}", body_style)]
]
patient_table = Table(patient_info, colWidths=[1.3*inch, 1.2*inch, 1.2*inch, 1.4*inch, 1.2*inch, 1.2*inch])
patient_table.setStyle(TableStyle([
('VALIGN', (0, 0), (-1, -1), 'TOP'),
('ALIGN', (0, 0), (-1, -1), 'LEFT'),
('BOTTOMPADDING', (0, 0), (-1, -1), 3),
('TOPPADDING', (0, 0), (-1, -1), 3),
('LEFTPADDING', (0, 0), (-1, -1), 0),
('RIGHTPADDING', (0, 0), (-1, -1), 5),
]))
story.append(patient_table)
story.append(Spacer(1, 0.25*inch))
story.append(Paragraph("EXAMINATION:", section_style))
story.append(Paragraph("CHEST", body_style))
story.append(Spacer(1, 0.1*inch))
if pd.notna(indication) and str(indication).strip() and str(indication).lower() not in ['none', 'nan', '']:
story.append(Paragraph("HISTORY:", section_style))
clean_indication = str(indication).replace('XXXX', '[redacted]')
story.append(Paragraph(clean_indication, body_style))
story.append(Spacer(1, 0.1*inch))
comparison = report_row.get('comparison', '')
if pd.notna(comparison) and str(comparison).strip() and str(comparison).lower() not in ['none', 'none.', 'nan', '']:
story.append(Paragraph("COMPARISON:", section_style))
clean_comparison = str(comparison).replace('XXXX', '[redacted]')
story.append(Paragraph(clean_comparison, body_style))
story.append(Spacer(1, 0.1*inch))
if len(projection_rows_list) > 0:
techniques = ", ".join([row['projection'] for _, row in projection_rows_list.iterrows()])
story.append(Paragraph("TECHNIQUE:", section_style))
story.append(Paragraph(f"{techniques} view", body_style))
story.append(Spacer(1, 0.1*inch))
story.append(Paragraph("FINDINGS:", section_style))
if pd.notna(findings) and str(findings).strip() and str(findings).lower() != 'nan':
clean_findings = str(findings).replace('XXXX', '[redacted]')
story.append(Paragraph(clean_findings, body_style))
else:
story.append(Paragraph("No significant findings.", body_style))
story.append(Spacer(1, 0.1*inch))
story.append(Paragraph("IMPRESSION:", section_style))
if pd.notna(impression) and str(impression).strip() and str(impression).lower() != 'nan':
clean_impression = str(impression).replace('XXXX', '[redacted]')
story.append(Paragraph(clean_impression, body_style))
else:
story.append(Paragraph("Normal chest radiograph.", body_style))
story.append(Spacer(1, 0.2*inch))
approval_data = [
[Paragraph("<b>Approved By:</b>", body_style), '']
]
signature_path = "images/signature.jpg"
radiologist_name = random.choice(['JOSE ANTONIO CRUZ', 'NERELLA KRISHNA TEJA', 'MARIA ELENA SANTOS', 'MICHAEL VINCENTO CORSINO'])
if os.path.exists(signature_path):
sig_img = Image(signature_path, width=1.2*inch, height=0.4*inch)
approval_data.append([sig_img, ''])
approval_data.append([Paragraph(f"<b>{radiologist_name}, M.D. (Radiologist)</b>", body_style), ''])
approval_data.append([Paragraph(f"MBBS, MD RADIO DIAGNOSIS | REG NO. APMC/FMR/{random.randint(90000, 99999)}",
ParagraphStyle('Small', parent=body_style, fontSize=8)), ''])
approval_table = Table(approval_data, colWidths=[3*inch, 4*inch])
approval_table.setStyle(TableStyle([
('VALIGN', (0, 0), (-1, -1), 'TOP'),
('ALIGN', (0, 0), (0, -1), 'LEFT'),
('BOTTOMPADDING', (0, 0), (-1, -1), 2),
('TOPPADDING', (0, 0), (-1, -1), 2),
]))
story.append(approval_table)
story.append(PageBreak())
if len(projection_rows_list) > 0:
images_found = []
for _, proj_row in projection_rows_list.iterrows():
filename = proj_row['filename']
image_path = f"images/{filename}"
if os.path.exists(image_path):
try:
projection_label = proj_row.get('projection', 'View')
images_found.append((image_path, projection_label))
except Exception as e:
print(f" ✗ Error checking image {image_path}: {e}")
print(f"\n Images Embedded: {len(images_found)}")
if images_found:
image_table_data = []
for i in range(0, len(images_found), 2):
row_images = []
for j in range(2):
if i + j < len(images_found):
img_path, label = images_found[i + j]
try:
img = Image(img_path, width=3*inch, height=3*inch)
caption = Paragraph(f"<b>{label} View</b>",
ParagraphStyle('Caption', parent=body_style, alignment=TA_CENTER, fontSize=10))
cell = Table([[img], [caption]], colWidths=[3*inch])
cell.setStyle(TableStyle([
('ALIGN', (0, 0), (-1, -1), 'CENTER'),
('VALIGN', (0, 0), (-1, -1), 'MIDDLE'),
]))
row_images.append(cell)
except Exception as e:
print(f" ✗ Could not load image {img_path}: {e}")
row_images.append('')
else:
row_images.append('')
if row_images:
image_table_data.append(row_images)
if image_table_data:
image_table = Table(image_table_data, colWidths=[3.3*inch, 3.3*inch])
image_table.setStyle(TableStyle([
('ALIGN', (0, 0), (-1, -1), 'CENTER'),
('VALIGN', (0, 0), (-1, -1), 'TOP'),
('LEFTPADDING', (0, 0), (-1, -1), 10),
('RIGHTPADDING', (0, 0), (-1, -1), 10),
('TOPPADDING', (0, 0), (-1, -1), 15),
('BOTTOMPADDING', (0, 0), (-1, -1), 15),
]))
story.append(image_table)
doc.build(story, onFirstPage=header_footer, onLaterPages=header_footer)
print(f"\n ✓ PDF Created: {output_filename}")
print(f"{'='*70}\n")
output_dir = "generated_reports"
os.makedirs(output_dir, exist_ok=True)
sample_reports = reports_df.head(5)
print("\n" + "="*70)
print(" RADIOLOGY REPORT GENERATOR")
print("="*70)
print(f" Total Reports: {len(sample_reports)}")
print(f" Output Directory: {output_dir}/")
print("="*70)
for idx, (_, report_row) in enumerate(sample_reports.iterrows(), 1):
uid = report_row['uid']
output_filename = f"{output_dir}/radiology_report_{idx}.pdf"
create_radiology_report(uid, report_row, output_filename, idx)
print("\n" + "="*70)
print(f" ✓ ALL REPORTS GENERATED SUCCESSFULLY!")
print(f" ✓ Location: {output_dir}/")
print("="*70 + "\n")