Pathora / backend /model.py
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import torch
import torch.nn as nn
import torch.nn.functional as F
import torch.utils.checkpoint as checkpoint
import numpy as np
from typing import Optional
from thop import profile
class IRB(nn.Module):
def __init__(self, in_features, hidden_features=None, out_features=None, ksize=3, act_layer=nn.Hardswish, drop=0.):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.fc1 = nn.Conv2d(in_features, hidden_features, 1, 1, 0)
self.act = act_layer()
self.conv = nn.Conv2d(hidden_features, hidden_features, kernel_size=ksize, padding=ksize // 2, stride=1,
groups=hidden_features)
self.fc2 = nn.Conv2d(hidden_features, out_features, 1, 1, 0)
self.drop = nn.Dropout(drop)
def forward(self, x, H, W):
B, N, C = x.shape
x = x.permute(0, 2, 1).reshape(B, C, H, W)
x = self.fc1(x)
x = self.act(x)
x = self.conv(x)
x = self.act(x)
x = self.fc2(x)
return x.reshape(B, C, -1).permute(0, 2, 1)
def drop_path_f(x, drop_prob: float = 0., training: bool = False):
if drop_prob == 0. or not training:
return x
keep_prob = 1 - drop_prob
shape = (x.shape[0],) + (1,) * (x.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=x.dtype, device=x.device)
random_tensor.floor_() # binarize
output = x.div(keep_prob) * random_tensor
return output
class DropPath(nn.Module):
def __init__(self, drop_prob=None):
super(DropPath, self).__init__()
self.drop_prob = drop_prob
def forward(self, x):
return drop_path_f(x, self.drop_prob, self.training)
def window_partition(x, window_size: int):
B, H, W, C = x.shape
x = x.view(B, H // window_size, window_size, W // window_size, window_size, C)
windows = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, C)
return windows
def window_reverse(windows, window_size: int, H: int, W: int):
B = int(windows.shape[0] / (H * W / window_size / window_size))
x = windows.view(B, H // window_size, W // window_size, window_size, window_size, -1)
x = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(B, H, W, -1)
return x
class PatchEmbed2(nn.Module):
def __init__(self, dim:int, patch_size=2, in_c=3, norm_layer=None):
super().__init__()
patch_size = (patch_size, patch_size)
self.patch_size = patch_size
self.in_chans = in_c
self.embed_dim = dim
self.proj = nn.Conv2d(dim, 2*dim, kernel_size=patch_size, stride=patch_size)
self.norm = norm_layer(2*dim) if norm_layer else nn.Identity()
def forward(self, x, H, W):
B, L, C = x.shape
assert L == H * W, "input feature has wrong size"
x = x.view(B, H, W, C)
pad_input = (H % self.patch_size[0] != 0) or (W % self.patch_size[1] != 0)
if pad_input:
x = F.pad(x, (0, self.patch_size[1] - W % self.patch_size[1],
0, self.patch_size[0] - H % self.patch_size[0],
0, 0))
x = x.reshape(B, H, W, -1).permute(0, 3, 1, 2)
x = self.proj(x)
_, _, H, W = x.shape
x = x.flatten(2).transpose(1, 2)
x = self.norm(x)
return x
class PatchEmbed(nn.Module):
def __init__(self, patch_size=4, in_c=3, embed_dim=96, norm_layer=None):
super().__init__()
patch_size = (patch_size, patch_size)
self.patch_size = patch_size
self.in_chans = in_c
self.embed_dim = embed_dim
self.proj = nn.Conv2d(in_c, embed_dim, kernel_size=patch_size, stride=patch_size)
self.norm = norm_layer(embed_dim) if norm_layer else nn.Identity()
def forward(self, x):
_, _, H, W = x.shape
# padding
# 如果输入图片的H,W不是patch_size的整数倍,需要进行padding
pad_input = (H % self.patch_size[0] != 0) or (W % self.patch_size[1] != 0)
if pad_input:
x = F.pad(x, (0, self.patch_size[1] - W % self.patch_size[1],
0, self.patch_size[0] - H % self.patch_size[0],
0, 0))
# 下采样patch_size倍
x = self.proj(x)
_, _, H, W = x.shape
x = x.flatten(2).transpose(1, 2)
x = self.norm(x)
return x, H, W
class PatchMerging(nn.Module):
def __init__(self, dim, norm_layer=nn.LayerNorm):
super().__init__()
self.dim = dim
self.reduction = nn.Linear(4 * dim, 2 * dim, bias=False)
self.norm = norm_layer(4 * dim)
def forward(self, x, H, W):
B, L, C = x.shape
assert L == H * W, "input feature has wrong size"
x = x.view(B, H, W, C)
pad_input = (H % 2 == 1) or (W % 2 == 1)
if pad_input:
x = F.pad(x, (0, 0, 0, W % 2, 0, H % 2))
x0 = x[:, 0::2, 0::2, :] # [B, H/2, W/2, C]
x1 = x[:, 1::2, 0::2, :] # [B, H/2, W/2, C]
x2 = x[:, 0::2, 1::2, :] # [B, H/2, W/2, C]
x3 = x[:, 1::2, 1::2, :] # [B, H/2, W/2, C]
x = torch.cat([x0, x1, x2, x3], -1) # [B, H/2, W/2, 4*C]
x = x.view(B, -1, 4 * C) # [B, H/2*W/2, 4*C]
x = self.norm(x)
x = self.reduction(x) # [B, H/2*W/2, 2*C]
return x
class Mlp(nn.Module):
def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.fc1 = nn.Linear(in_features, hidden_features)
self.act = act_layer()
self.drop1 = nn.Dropout(drop)
self.fc2 = nn.Linear(hidden_features, out_features)
self.drop2 = nn.Dropout(drop)
def forward(self, x):
x = self.fc1(x)
x = self.act(x)
x = self.drop1(x)
x = self.fc2(x)
x = self.drop2(x)
return x
class WindowAttention(nn.Module):
def __init__(self, dim, window_size, num_heads, qkv_bias=True, attn_drop=0., proj_drop=0.):
super().__init__()
self.dim = dim
self.window_size = window_size # [Mh, Mw]
self.num_heads = num_heads
head_dim = dim // num_heads
self.scale = head_dim ** -0.5
# define a parameter table of relative position bias
self.relative_position_bias_table = nn.Parameter(
torch.zeros((2 * window_size[0] - 1) * (2 * window_size[1] - 1), num_heads)) # [2*Mh-1 * 2*Mw-1, nH]
# get pair-wise relative position index for each token inside the window
coords_h = torch.arange(self.window_size[0])
coords_w = torch.arange(self.window_size[1])
coords = torch.stack(torch.meshgrid([coords_h, coords_w]))
coords_flatten = torch.flatten(coords, 1) # [2, Mh*Mw]
# [2, Mh*Mw, 1] - [2, 1, Mh*Mw]
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :] # [2, Mh*Mw, Mh*Mw]
relative_coords = relative_coords.permute(1, 2, 0).contiguous() # [Mh*Mw, Mh*Mw, 2]
relative_coords[:, :, 0] += self.window_size[0] - 1 # shift to start from 0
relative_coords[:, :, 1] += self.window_size[1] - 1
relative_coords[:, :, 0] *= 2 * self.window_size[1] - 1
relative_position_index = relative_coords.sum(-1) # [Mh*Mw, Mh*Mw]
self.register_buffer("relative_position_index", relative_position_index)
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
self.attn_drop = nn.Dropout(attn_drop)
self.proj = nn.Linear(dim, dim)
self.proj_drop = nn.Dropout(proj_drop)
nn.init.trunc_normal_(self.relative_position_bias_table, std=.02)
self.softmax = nn.Softmax(dim=-1)
def forward(self, x, mask: Optional[torch.Tensor] = None):
B_, N, C = x.shape
qkv = self.qkv(x).reshape(B_, N, 3, self.num_heads, C // self.num_heads).permute(2, 0, 3, 1, 4)
# [batch_size*num_windows, num_heads, Mh*Mw, embed_dim_per_head]
q, k, v = qkv.unbind(0) # make torchscript happy (cannot use tensor as tuple)
# transpose: -> [batch_size*num_windows, num_heads, embed_dim_per_head, Mh*Mw]
# @: multiply -> [batch_size*num_windows, num_heads, Mh*Mw, Mh*Mw]
q = q * self.scale
attn = (q @ k.transpose(-2, -1))
relative_position_bias = self.relative_position_bias_table[self.relative_position_index.view(-1)].view(
self.window_size[0] * self.window_size[1], self.window_size[0] * self.window_size[1], -1)
relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous() # [nH, Mh*Mw, Mh*Mw]
attn = attn + relative_position_bias.unsqueeze(0)
if mask is not None:
nW = mask.shape[0] # num_windows
attn = attn.view(B_ // nW, nW, self.num_heads, N, N) + mask.unsqueeze(1).unsqueeze(0)
attn = attn.view(-1, self.num_heads, N, N)
attn = self.softmax(attn)
else:
attn = self.softmax(attn)
attn = self.attn_drop(attn)
x = (attn @ v).transpose(1, 2).reshape(B_, N, C)
x = self.proj(x)
x = self.proj_drop(x)
return x
class TransformerBlock(nn.Module):
def __init__(self, dim, num_heads, window_sizes=(7,4,2), branch_num=3,
mlp_ratio=4., qkv_bias=True, drop=0., attn_drop=0., drop_path=0.,
act_layer=nn.GELU, norm_layer=nn.LayerNorm):
super().__init__()
self.dim = dim
self.num_heads = num_heads
self.window_sizes = window_sizes
self.branch_num = branch_num
self.mlp_ratio = mlp_ratio
self.norm1 = norm_layer(dim)
self.attn = WindowAttention(
dim//branch_num, window_size=(self.window_sizes[0], self.window_sizes[0]), num_heads=num_heads//branch_num, qkv_bias=qkv_bias,
attn_drop=attn_drop, proj_drop=drop)
self.attn1 = WindowAttention(
dim//branch_num, window_size=(self.window_sizes[1], self.window_sizes[1]), num_heads=num_heads//branch_num, qkv_bias=qkv_bias,
attn_drop=attn_drop, proj_drop=drop)
self.attn2 = WindowAttention(
dim//branch_num, window_size=(self.window_sizes[2], self.window_sizes[2]), num_heads=num_heads//branch_num, qkv_bias=qkv_bias,
attn_drop=attn_drop, proj_drop=drop)
self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity()
self.norm2 = norm_layer(dim)
mlp_hidden_dim = int(dim * mlp_ratio)
self.mlp = IRB(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop)
def forward(self, x, attn_mask):
H, W = self.H, self.W
B, L, C = x.shape
assert L == H * W, "input feature has wrong size"
shortcut = x
x = self.norm1(x)
x = x.view(B, H, W, C)
x0 = x[:,:,:,:(C//self.branch_num)]
x1 = x[:,:,:,(C//self.branch_num):(2*C//self.branch_num)]
x2 = x[:,:,:,(2*C//self.branch_num):]
# ----------------------------------------------------------------------------------------------
pad_l = pad_t = 0
pad_r = (self.window_sizes[0] - W % self.window_sizes[0]) % self.window_sizes[0]
pad_b = (self.window_sizes[0] - H % self.window_sizes[0]) % self.window_sizes[0]
x0 = F.pad(x0, (0, 0, pad_l, pad_r, pad_t, pad_b))
_, Hp, Wp, _ = x0.shape
attn_mask = None
# partition windows
x_windows = window_partition(x0, self.window_sizes[0]) # [nW*B, Mh, Mw, C]
x_windows = x_windows.view(-1, self.window_sizes[0] * self.window_sizes[0], C//self.branch_num) # [nW*B, Mh*Mw, C]
# W-MSA/SW-MSA
attn_windows = self.attn(x_windows, mask=attn_mask) # [nW*B, Mh*Mw, C]
# merge windows
attn_windows = attn_windows.view(-1, self.window_sizes[0], self.window_sizes[0], C//self.branch_num) # [nW*B, Mh, Mw, C]
x0 = window_reverse(attn_windows, self.window_sizes[0], Hp, Wp) # [B, H', W', C]
if pad_r > 0 or pad_b > 0:
# 把前面pad的数据移除掉
x0 = x0[:, :H, :W, :].contiguous()
x0 = x0.view(B, H * W, C//self.branch_num)
# ----------------------------------------------------------------------------------------------
pad_l = pad_t = 0
pad_r = (self.window_sizes[1] - W % self.window_sizes[1]) % self.window_sizes[1]
pad_b = (self.window_sizes[1] - H % self.window_sizes[1]) % self.window_sizes[1]
x1 = F.pad(x1, (0, 0, pad_l, pad_r, pad_t, pad_b))
_, Hp, Wp, _ = x1.shape
attn_mask = None
# partition windows
x_windows = window_partition(x1, self.window_sizes[1]) # [nW*B, Mh, Mw, C]
x_windows = x_windows.view(-1, self.window_sizes[1] * self.window_sizes[1],
C // self.branch_num) # [nW*B, Mh*Mw, C]
# W-MSA/SW-MSA
attn_windows = self.attn1(x_windows, mask=attn_mask) # [nW*B, Mh*Mw, C]
# merge windows
attn_windows = attn_windows.view(-1, self.window_sizes[1], self.window_sizes[1],
C // self.branch_num) # [nW*B, Mh, Mw, C]
x1 = window_reverse(attn_windows, self.window_sizes[1], Hp, Wp) # [B, H', W', C]
if pad_r > 0 or pad_b > 0:
# 把前面pad的数据移除掉
x1 = x1[:, :H, :W, :].contiguous()
x1 = x1.view(B, H * W, C // self.branch_num)
# ----------------------------------------------------------------------------------------------
pad_l = pad_t = 0
pad_r = (self.window_sizes[2] - W % self.window_sizes[2]) % self.window_sizes[2]
pad_b = (self.window_sizes[2] - H % self.window_sizes[2]) % self.window_sizes[2]
x2 = F.pad(x2, (0, 0, pad_l, pad_r, pad_t, pad_b))
_, Hp, Wp, _ = x2.shape
attn_mask = None
x_windows = window_partition(x2, self.window_sizes[2]) # [nW*B, Mh, Mw, C]
x_windows = x_windows.view(-1, self.window_sizes[2] * self.window_sizes[2],
C // self.branch_num) # [nW*B, Mh*Mw, C]
attn_windows = self.attn2(x_windows, mask=attn_mask) # [nW*B, Mh*Mw, C]
attn_windows = attn_windows.view(-1, self.window_sizes[2], self.window_sizes[2],
C // self.branch_num) # [nW*B, Mh, Mw, C]
x2 = window_reverse(attn_windows, self.window_sizes[2], Hp, Wp) # [B, H', W', C]
if pad_r > 0 or pad_b > 0:
x2 = x2[:, :H, :W, :].contiguous()
x2 = x2.view(B, H * W, C // self.branch_num)
x = torch.cat([x0, x1, x2], -1)
# FFN
x = shortcut + self.drop_path(x)
x = x + self.drop_path(self.mlp(self.norm2(x), H, W))
return x
class BasicLayer(nn.Module):
def __init__(self, dim, depth, num_heads, window_size,
mlp_ratio=4., qkv_bias=True, drop=0., attn_drop=0.,
drop_path=0., norm_layer=nn.LayerNorm, downsample=None, use_checkpoint=False):
super().__init__()
self.dim = dim
self.depth = depth
self.window_size = window_size
self.use_checkpoint = use_checkpoint
self.shift_size = window_size // 2
# build blocks
self.blocks = nn.ModuleList([
TransformerBlock(
dim=dim,
num_heads=num_heads,
window_sizes=(7,4,2),
mlp_ratio=mlp_ratio,
qkv_bias=qkv_bias,
drop=drop,
attn_drop=attn_drop,
drop_path=drop_path[i] if isinstance(drop_path, list) else drop_path,
norm_layer=norm_layer)
for i in range(depth)])
# patch merging layer
if downsample is not None:
self.downsample = downsample(dim=dim, norm_layer=norm_layer)
else:
self.downsample = None
def create_mask(self, x, H, W):
Hp = int(np.ceil(H / self.window_size)) * self.window_size
Wp = int(np.ceil(W / self.window_size)) * self.window_size
img_mask = torch.zeros((1, Hp, Wp, 1), device=x.device) # [1, Hp, Wp, 1]
h_slices = (slice(0, -self.window_size),
slice(-self.window_size, -self.shift_size),
slice(-self.shift_size, None))
w_slices = (slice(0, -self.window_size),
slice(-self.window_size, -self.shift_size),
slice(-self.shift_size, None))
cnt = 0
for h in h_slices:
for w in w_slices:
img_mask[:, h, w, :] = cnt
cnt += 1
mask_windows = window_partition(img_mask, self.window_size) # [nW, Mh, Mw, 1]
mask_windows = mask_windows.view(-1, self.window_size * self.window_size) # [nW, Mh*Mw]
attn_mask = mask_windows.unsqueeze(1) - mask_windows.unsqueeze(2) # [nW, 1, Mh*Mw] - [nW, Mh*Mw, 1]
attn_mask = attn_mask.masked_fill(attn_mask != 0, float(-100.0)).masked_fill(attn_mask == 0, float(0.0))
return attn_mask
def forward(self, x, H, W):
attn_mask = self.create_mask(x, H, W) # [nW, Mh*Mw, Mh*Mw]
for blk in self.blocks:
blk.H, blk.W = H, W
if not torch.jit.is_scripting() and self.use_checkpoint:
x = checkpoint.checkpoint(blk, x, attn_mask)
else:
x = blk(x, attn_mask)
if self.downsample is not None:
x = self.downsample(x, H, W)
H, W = (H + 1) // 2, (W + 1) // 2
return x, H, W
class Transformer(nn.Module):
def __init__(self, patch_size=4, in_chans=3, num_classes=1000,
embed_dim=96, depths=(2, 2, 6, 2), num_heads=(3, 6, 12, 24),
window_size=7, mlp_ratio=4., qkv_bias=True,
drop_rate=0., attn_drop_rate=0., drop_path_rate=0.1,
norm_layer=nn.LayerNorm, patch_norm=True,
use_checkpoint=False, **kwargs):
super().__init__()
self.num_classes = num_classes
self.num_layers = len(depths)
self.embed_dim = embed_dim
self.patch_norm = patch_norm
# stage4输出特征矩阵的channels
self.num_features = int(embed_dim * 2 ** (self.num_layers - 1))
self.mlp_ratio = mlp_ratio
self.patch_embed = PatchEmbed(
patch_size=patch_size, in_c=in_chans, embed_dim=embed_dim,
norm_layer=norm_layer if self.patch_norm else None)
self.pos_drop = nn.Dropout(p=drop_rate)
# stochastic depth
dpr = [x.item() for x in torch.linspace(0, drop_path_rate, sum(depths))] # stochastic depth decay rule
self.layers = nn.ModuleList()
for i_layer in range(self.num_layers):
layers = BasicLayer(dim=int(embed_dim * 2 ** i_layer),
depth=depths[i_layer],
num_heads=num_heads[i_layer],
window_size=window_size,
mlp_ratio=self.mlp_ratio,
qkv_bias=qkv_bias,
drop=drop_rate,
attn_drop=attn_drop_rate,
drop_path=dpr[sum(depths[:i_layer]):sum(depths[:i_layer + 1])],
norm_layer=norm_layer,
downsample=PatchEmbed2 if (i_layer < self.num_layers - 1) else None,
use_checkpoint=use_checkpoint)
self.layers.append(layers)
self.norm = norm_layer(self.num_features)
self.avgpool = nn.AdaptiveAvgPool1d(1)
self.head = nn.Linear(self.num_features, num_classes) if num_classes > 0 else nn.Identity()
self.apply(self._init_weights)
def _init_weights(self, m):
if isinstance(m, nn.Linear):
nn.init.trunc_normal_(m.weight, std=.02)
if isinstance(m, nn.Linear) and m.bias is not None:
nn.init.constant_(m.bias, 0)
elif isinstance(m, nn.LayerNorm):
nn.init.constant_(m.bias, 0)
nn.init.constant_(m.weight, 1.0)
def forward(self, x):
# x: [B, L, C]
x, H, W = self.patch_embed(x)
x = self.pos_drop(x)
for layer in self.layers:
x, H, W = layer(x, H, W)
x = self.norm(x) # [B, L, C]
x = self.avgpool(x.transpose(1, 2)) # [B, C, 1]
x = torch.flatten(x, 1)
x = self.head(x)
return x
def MWT(num_classes: int = 1000, **kwargs):
model = Transformer(in_chans=3,
patch_size=4,
# window_sizes=(7,4,2),
embed_dim=96,
depths=(2, 4, 4, 2),
num_heads=(3, 6, 12, 24),
num_classes=num_classes,
**kwargs)
return model
if __name__ == '__main__':
model = MWT(num_classes=2)
input = torch.randn(1, 3, 224, 224)
flops, params = profile(model, inputs=(input,))
print(flops)
print(params)