Spaces:
Running
Running
Delete src/sample_structures
Browse files- src/sample_structures/C2H6.xyz +0 -10
- src/sample_structures/C6H6.xyz +0 -14
- src/sample_structures/CH4.xyz +0 -7
- src/sample_structures/H2O.xyz +0 -5
- src/sample_structures/Si.cif +0 -38
- src/sample_structures/caffeine.xyz +0 -26
- src/sample_structures/hBN_monolayer_4x4_supercell.extxyz +0 -34
- src/sample_structures/ibuprofen.xyz +0 -35
src/sample_structures/C2H6.xyz
DELETED
|
@@ -1,10 +0,0 @@
|
|
| 1 |
-
8
|
| 2 |
-
Ethane molecule
|
| 3 |
-
C 0.0 0.0 0.0
|
| 4 |
-
C 0.0 0.0 1.54
|
| 5 |
-
H 1.02 0.0 -0.37
|
| 6 |
-
H -0.51 0.88 -0.37
|
| 7 |
-
H -0.51 -0.88 -0.37
|
| 8 |
-
H 0.51 -0.88 1.91
|
| 9 |
-
H 0.51 0.88 1.91
|
| 10 |
-
H -1.02 0.0 1.91
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/C6H6.xyz
DELETED
|
@@ -1,14 +0,0 @@
|
|
| 1 |
-
12
|
| 2 |
-
Benzene molecule
|
| 3 |
-
C 0.0 1.4 0.0
|
| 4 |
-
C 1.212 0.7 0.0
|
| 5 |
-
C 1.212 -0.7 0.0
|
| 6 |
-
C 0.0 -1.4 0.0
|
| 7 |
-
C -1.212 -0.7 0.0
|
| 8 |
-
C -1.212 0.7 0.0
|
| 9 |
-
H 0.0 2.48 0.0
|
| 10 |
-
H 2.147 1.24 0.0
|
| 11 |
-
H 2.147 -1.24 0.0
|
| 12 |
-
H 0.0 -2.48 0.0
|
| 13 |
-
H -2.147 -1.24 0.0
|
| 14 |
-
H -2.147 1.24 0.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/CH4.xyz
DELETED
|
@@ -1,7 +0,0 @@
|
|
| 1 |
-
5
|
| 2 |
-
Methane molecule
|
| 3 |
-
C 0.0 0.0 0.0
|
| 4 |
-
H 0.63 0.63 0.63
|
| 5 |
-
H -0.63 -0.63 0.63
|
| 6 |
-
H -0.63 0.63 -0.63
|
| 7 |
-
H 0.63 -0.63 -0.63
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/H2O.xyz
DELETED
|
@@ -1,5 +0,0 @@
|
|
| 1 |
-
3
|
| 2 |
-
Water molecule
|
| 3 |
-
O 0.0 0.0 0.0
|
| 4 |
-
H 0.0 0.77 0.59
|
| 5 |
-
H 0.0 -0.77 0.59
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/Si.cif
DELETED
|
@@ -1,38 +0,0 @@
|
|
| 1 |
-
# generated using pymatgen
|
| 2 |
-
data_Si
|
| 3 |
-
_symmetry_space_group_name_H-M 'P 1'
|
| 4 |
-
_cell_length_a 5.44370237
|
| 5 |
-
_cell_length_b 5.44370237
|
| 6 |
-
_cell_length_c 5.44370237
|
| 7 |
-
_cell_angle_alpha 90.00000000
|
| 8 |
-
_cell_angle_beta 90.00000000
|
| 9 |
-
_cell_angle_gamma 90.00000000
|
| 10 |
-
_symmetry_Int_Tables_number 1
|
| 11 |
-
_chemical_formula_structural Si
|
| 12 |
-
_chemical_formula_sum Si8
|
| 13 |
-
_cell_volume 161.31810739
|
| 14 |
-
_cell_formula_units_Z 8
|
| 15 |
-
loop_
|
| 16 |
-
_symmetry_equiv_pos_site_id
|
| 17 |
-
_symmetry_equiv_pos_as_xyz
|
| 18 |
-
1 'x, y, z'
|
| 19 |
-
loop_
|
| 20 |
-
_atom_type_symbol
|
| 21 |
-
_atom_type_oxidation_number
|
| 22 |
-
Si0+ 0.0
|
| 23 |
-
loop_
|
| 24 |
-
_atom_site_type_symbol
|
| 25 |
-
_atom_site_label
|
| 26 |
-
_atom_site_symmetry_multiplicity
|
| 27 |
-
_atom_site_fract_x
|
| 28 |
-
_atom_site_fract_y
|
| 29 |
-
_atom_site_fract_z
|
| 30 |
-
_atom_site_occupancy
|
| 31 |
-
Si0+ Si0 1 0.75000000 0.75000000 0.25000000 1
|
| 32 |
-
Si0+ Si1 1 0.00000000 0.50000000 0.50000000 1
|
| 33 |
-
Si0+ Si2 1 0.75000000 0.25000000 0.75000000 1
|
| 34 |
-
Si0+ Si3 1 0.00000000 0.00000000 0.00000000 1
|
| 35 |
-
Si0+ Si4 1 0.25000000 0.75000000 0.75000000 1
|
| 36 |
-
Si0+ Si5 1 0.50000000 0.50000000 0.00000000 1
|
| 37 |
-
Si0+ Si6 1 0.25000000 0.25000000 0.25000000 1
|
| 38 |
-
Si0+ Si7 1 0.50000000 0.00000000 0.50000000 1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/caffeine.xyz
DELETED
|
@@ -1,26 +0,0 @@
|
|
| 1 |
-
24
|
| 2 |
-
2519
|
| 3 |
-
O 0.47000000 2.56880000 0.00060000
|
| 4 |
-
O -3.12710000 -0.44360000 -0.00030000
|
| 5 |
-
N -0.96860000 -1.31250000 0.00000000
|
| 6 |
-
N 2.21820000 0.14120000 -0.00030000
|
| 7 |
-
N -1.34770000 1.07970000 -0.00010000
|
| 8 |
-
N 1.41190000 -1.93720000 0.00020000
|
| 9 |
-
C 0.85790000 0.25920000 -0.00080000
|
| 10 |
-
C 0.38970000 -1.02640000 -0.00040000
|
| 11 |
-
C 0.03070000 1.42200000 -0.00060000
|
| 12 |
-
C -1.90610000 -0.24950000 -0.00040000
|
| 13 |
-
C 2.50320000 -1.19980000 0.00030000
|
| 14 |
-
C -1.42760000 -2.69600000 0.00080000
|
| 15 |
-
C 3.19260000 1.20610000 0.00030000
|
| 16 |
-
C -2.29690000 2.18810000 0.00070000
|
| 17 |
-
H 3.51630000 -1.57870000 0.00080000
|
| 18 |
-
H -1.04510000 -3.19730000 -0.89370000
|
| 19 |
-
H -2.51860000 -2.75960000 0.00110000
|
| 20 |
-
H -1.04470000 -3.19630000 0.89570000
|
| 21 |
-
H 4.19920000 0.78010000 0.00020000
|
| 22 |
-
H 3.04680000 1.80920000 -0.89920000
|
| 23 |
-
H 3.04660000 1.80830000 0.90040000
|
| 24 |
-
H -1.80870000 3.16510000 -0.00030000
|
| 25 |
-
H -2.93220000 2.10270000 0.88810000
|
| 26 |
-
H -2.93460000 2.10210000 -0.88490000
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/hBN_monolayer_4x4_supercell.extxyz
DELETED
|
@@ -1,34 +0,0 @@
|
|
| 1 |
-
32
|
| 2 |
-
Lattice="10.04106798 0.00000000 0.00000000 -5.02053399 8.69581995 0.00000000 0.00000000 0.00000000 15.00000000" Properties=species:S:1:pos:R:3
|
| 3 |
-
B 0.00000000 1.44930332 7.50000000
|
| 4 |
-
N 1.25513350 0.72465166 7.50000000
|
| 5 |
-
B 2.51026702 1.44930327 7.50000000
|
| 6 |
-
B -1.25513351 3.62325811 7.50000000
|
| 7 |
-
B 1.25513351 3.62325811 7.50000000
|
| 8 |
-
N 3.76540041 0.72465163 7.50000000
|
| 9 |
-
N 0.00000000 2.89860654 7.50000000
|
| 10 |
-
N 2.51026678 2.89860654 7.50000000
|
| 11 |
-
B -2.51026702 5.79721308 7.50000000
|
| 12 |
-
B 0.00000000 5.79721308 7.50000000
|
| 13 |
-
N -1.25513351 5.07256174 7.50000000
|
| 14 |
-
N 1.25513339 5.07256174 7.50000000
|
| 15 |
-
B -3.76540041 7.97116804 7.50000000
|
| 16 |
-
B -1.25513339 7.97116804 7.50000000
|
| 17 |
-
N -2.51026678 7.24651670 7.50000000
|
| 18 |
-
N 0.00000000 7.24651670 7.50000000
|
| 19 |
-
B 5.02053404 1.44930327 7.50000000
|
| 20 |
-
B 3.76540041 3.62325811 7.50000000
|
| 21 |
-
N 6.27566767 0.72465163 7.50000000
|
| 22 |
-
N 5.02053404 2.89860654 7.50000000
|
| 23 |
-
B 2.51026702 5.79721308 7.50000000
|
| 24 |
-
N 3.76540065 5.07256174 7.50000000
|
| 25 |
-
B 1.25513363 7.97116804 7.50000000
|
| 26 |
-
N 2.51026726 7.24651670 7.50000000
|
| 27 |
-
B 7.53080082 1.44930327 7.50000000
|
| 28 |
-
B 6.27566719 3.62325811 7.50000000
|
| 29 |
-
N 8.78593445 0.72465163 7.50000000
|
| 30 |
-
N 7.53080082 2.89860654 7.50000000
|
| 31 |
-
B 5.02053356 5.79721308 7.50000000
|
| 32 |
-
N 6.27566719 5.07256174 7.50000000
|
| 33 |
-
B 3.76540041 7.97116804 7.50000000
|
| 34 |
-
N 5.02053404 7.24651670 7.50000000
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
src/sample_structures/ibuprofen.xyz
DELETED
|
@@ -1,35 +0,0 @@
|
|
| 1 |
-
33
|
| 2 |
-
3672
|
| 3 |
-
O -4.44570000 -1.00320000 0.41130000
|
| 4 |
-
O -2.40050000 -1.91140000 0.05310000
|
| 5 |
-
C 3.90240000 -0.44110000 0.03620000
|
| 6 |
-
C 3.14860000 0.81940000 -0.43130000
|
| 7 |
-
C 1.65280000 0.73930000 -0.24720000
|
| 8 |
-
C -1.09460000 0.59350000 0.09010000
|
| 9 |
-
C -2.57280000 0.51520000 0.27190000
|
| 10 |
-
C 3.60760000 -0.77600000 1.50050000
|
| 11 |
-
C 3.52390000 -1.62990000 -0.85050000
|
| 12 |
-
C 0.86900000 0.22810000 -1.26950000
|
| 13 |
-
C 1.08970000 1.17910000 0.94050000
|
| 14 |
-
C -0.51350000 0.15490000 -1.09980000
|
| 15 |
-
C -0.29290000 1.10570000 1.11020000
|
| 16 |
-
C -3.37360000 1.34950000 -0.74860000
|
| 17 |
-
C -3.10040000 -0.92330000 0.23320000
|
| 18 |
-
H 4.97750000 -0.25270000 -0.07350000
|
| 19 |
-
H 3.37890000 1.02420000 -1.48540000
|
| 20 |
-
H 3.52980000 1.69070000 0.11820000
|
| 21 |
-
H -2.82430000 0.88960000 1.27390000
|
| 22 |
-
H 2.57940000 -1.11670000 1.65740000
|
| 23 |
-
H 3.79580000 0.08790000 2.14620000
|
| 24 |
-
H 4.26580000 -1.58490000 1.83750000
|
| 25 |
-
H 4.17780000 -2.48140000 -0.63010000
|
| 26 |
-
H 2.49640000 -1.96880000 -0.68630000
|
| 27 |
-
H 3.64940000 -1.38950000 -1.91150000
|
| 28 |
-
H 1.30840000 -0.10990000 -2.20350000
|
| 29 |
-
H 1.70240000 1.58550000 1.73980000
|
| 30 |
-
H -1.12080000 -0.24490000 -1.90750000
|
| 31 |
-
H -0.72900000 1.45340000 2.04300000
|
| 32 |
-
H -3.00120000 2.37920000 -0.78400000
|
| 33 |
-
H -3.30320000 0.92940000 -1.75820000
|
| 34 |
-
H -4.43570000 1.38950000 -0.48350000
|
| 35 |
-
H -4.76390000 -1.93050000 0.37820000
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|