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Runtime error
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Upload 8 files
Browse files- .env +9 -0
- app.py.py +434 -0
- categorizer_prompt.txt +21 -0
- dbott-464906-c46c8756b829.json +13 -0
- doctor_prompt.txt +11 -0
- jarvis_command_prompt.txt +8 -0
- jarvis_prompt.txt +8 -0
- system_prompt.txt +16 -0
.env
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GROQ_API_KEY = "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" # <-- PASTE YOUR GROQ API KEY HERE
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# .env file
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# Paste your secret API keys here
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GROQ_API_KEY="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"
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GOOGLE_API_KEY="AIzaSyDaWTMQ3xQTFIDJ5YLJZaq67AMMKRdj76k"
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GOOGLE_DOCTOR_API_KEY="AIzaSyAAmC656joB1x5534GnQ3mMcjg7bkdPRbc"
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TOGETHER_API_KEY = "tgp_v1_dRxzBz77bgEiTVDqDli3KjVZ5rjhIXbE1k4l9GBBzu4"
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app.py.py
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import gradio as gr
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import pandas as pd
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import asyncio
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import gspread
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from google.oauth2.service_account import Credentials
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from gradio.themes.base import Base
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import os
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import google.generativeai as genai
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from PIL import Image
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import traceback
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import time
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import re
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# --- PDF Generation Imports ---
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from reportlab.platypus import SimpleDocTemplate, Paragraph, Spacer, Image as RLImage, PageBreak
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from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle
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from reportlab.lib.units import inch
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from reportlab.lib.colors import navy, black, dimgrey
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from reportlab.lib.enums import TA_CENTER, TA_JUSTIFY
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# ==============================================================================
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# 1. AUTHENTICATION & CONFIGURATION
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# ==============================================================================
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MAX_IMAGES = 5
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SHEET_COLUMN_MAP = {
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"image1_summary": "J", "image2_summary": "K", "image3_summary": "L",
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"image4_summary": "M", "image5_summary": "N", "executive_summary": "O"
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}
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# --- Google Sheets ---
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GOOGLE_SHEETS_CREDS_PATH = os.getenv("GOOGLE_SHEETS_CREDS_PATH", "dbott-464906-c46c8756b829.json")
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is_sheets_authenticated = False
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try:
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SCOPES = ["https://www.googleapis.com/auth/spreadsheets", "https://www.googleapis.com/auth/drive"]
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creds = Credentials.from_service_account_file(GOOGLE_SHEETS_CREDS_PATH, scopes=SCOPES)
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gc = gspread.authorize(creds)
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sh = gc.open("PatientData")
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ws = sh.get_worksheet(0)
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print("✅ Google Sheets authenticated successfully.")
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is_sheets_authenticated = True
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except Exception as e:
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print(f"⚠️ Could not authenticate with Google Sheets: {e}. Using offline fallback data.")
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ws = pd.DataFrame({
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"abha_id": ["12345678901233"], "full_name": ["Pashwiwi Sharma"], "Age": [22], "weight_kg": ["64"],
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"reason_for_visit": ["Allergy on right hand..."], "allergies": ["Pollen"],
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"Medication": ["None"], "symptoms_description": ["Unsure of cause..."],
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"Summary": ["Patient presents with an acute allergic reaction..."]
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})
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# --- Gemini API ---
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is_gemini_configured = False
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try:
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GOOGLE_API_KEY = "AIzaSyDO6o5B2u5WEMXqR7a-xnGorfzt64Vjq14" # <- Replace with actual API key
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genai.configure(api_key=GOOGLE_API_KEY)
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| 56 |
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gemini_model = genai.GenerativeModel('gemini-1.5-flash-latest')
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| 57 |
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print("✅ Gemini API configured successfully.")
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is_gemini_configured = True
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except Exception as e:
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print(f"⚠️ Could not configure Gemini API: {e}. AI features will be disabled.")
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gemini_model = None
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| 62 |
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# ==============================================================================
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# 2. SYSTEM PROMPTS
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| 65 |
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# ==============================================================================
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SYSTEM_PROMPT_IMAGE_ANALYSIS = """
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| 67 |
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You are a highly skilled medical imaging expert AI. Analyze the provided medical image, prescription, or report and structure your response according to the following points using clear markdown formatting.
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| 68 |
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0. **Report Information** (if applicable): Doctor/Clinic Name, Date, Hospital/Facility, Patient Details (Age, Sex, etc.) if visible.
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| 69 |
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1. **Image Type & Region**: Modality (X-ray, MRI, CT, Ultrasound, Photo, etc.), anatomical region, and positioning.
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2. **Key Findings**: Systematically list primary observations and potential abnormalities with detailed descriptions.
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| 71 |
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3. **Diagnostic Assessment**: Provide a primary assessment or impression. List differential diagnoses if applicable. Highlight any critical/urgent findings.
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| 72 |
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4. **Patient-Friendly Explanation**: Simplify the findings in clear, non-technical language.
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| 73 |
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---
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| 74 |
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***Disclaimer:** This AI-generated analysis is for informational purposes only and is NOT a substitute for professional medical advice, diagnosis, or treatment. A qualified healthcare professional must perform the final interpretation.*
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| 75 |
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"""
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| 76 |
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| 77 |
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SYSTEM_PROMPT_DETAILED_REPORT = """You are an expert medical scribe AI. Your task is to create a single, comprehensive, and data-rich patient report by synthesizing all the provided information.
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| 78 |
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**Your Goal:** Weave the patient's demographics, their past medical summary, the reason for their current visit, and the findings from new medical images into a cohesive and professional narrative.
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| 79 |
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**Required Structure:** Generate the report in Markdown format using the exact following headings:
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| 80 |
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### Patient Information
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| 81 |
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(Summarize the patient's key demographic details: ABHA ID, Name, Age, Weight.)
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| 82 |
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### Medical History & Previous Summary
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| 83 |
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(Detail the patient's known allergies, current medications, and the summary from their previous visits. This provides historical context.)
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| 84 |
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### Current Visit Details
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| 85 |
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(Describe the primary reason for the current visit and the specific symptoms the patient is experiencing now.)
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| 86 |
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### Comprehensive Image Analysis
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| 87 |
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(Integrate the findings from all the provided image analyses. For each image, present its key findings and diagnostic assessment in a clear, organized manner. If there are multiple images, address each one.)
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| 88 |
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### Overall Synthesis & Impression
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| 89 |
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(This is the most important section. Provide a concise, professional synthesis that connects the dots. Correlate the patient's history and current symptoms with the new findings from the image analysis. Formulate a concluding impression based on the totality of the information.)
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| 90 |
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"""
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| 91 |
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| 92 |
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# ==============================================================================
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| 93 |
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# 3. PDF GENERATION ENGINE
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| 94 |
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# ==============================================================================
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| 95 |
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def create_report_pdf(markdown_text, image_paths, image_analyses):
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| 96 |
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# This function remains the same.
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| 97 |
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try:
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| 98 |
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pdf_path = f"temp_report_{int(time.time())}.pdf"
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| 99 |
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doc = SimpleDocTemplate(pdf_path, pagesize=(8.5 * inch, 11 * inch), topMargin=0.75*inch, bottomMargin=0.75*inch, leftMargin=0.75*inch, rightMargin=0.75*inch)
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| 100 |
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styles = getSampleStyleSheet()
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| 101 |
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styles.add(ParagraphStyle(name='TitleStyle', fontName='Helvetica-Bold', fontSize=18, alignment=TA_CENTER, textColor=navy, spaceAfter=24))
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| 102 |
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styles.add(ParagraphStyle(name='HeadingStyle', fontName='Helvetica-Bold', fontSize=14, textColor=navy, spaceBefore=12, spaceAfter=6))
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| 103 |
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styles.add(ParagraphStyle(name='Justify', parent=styles['Normal'], alignment=TA_JUSTIFY))
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| 104 |
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styles.add(ParagraphStyle(name='BulletStyle', parent=styles['Justify'], leftIndent=20, spaceAfter=4))
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| 105 |
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styles.add(ParagraphStyle(name='ImageTitle', parent=styles['Normal'], alignment=TA_CENTER, spaceBefore=18, spaceAfter=4, fontName='Helvetica-Bold'))
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| 106 |
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styles.add(ParagraphStyle(name='ImageCaption', parent=styles['Normal'], alignment=TA_CENTER, spaceAfter=12, fontName='Helvetica-Oblique', textColor=dimgrey, fontSize=9))
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| 107 |
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| 108 |
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story = [Paragraph("Comprehensive Medical Report", styles['TitleStyle'])]
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| 109 |
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| 110 |
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for line in markdown_text.split('\n'):
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| 111 |
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line = line.strip()
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| 112 |
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if not line: continue
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| 113 |
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line = re.sub(r'\*\*(.*?)\*\*', r'<b>\1</b>', line)
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| 114 |
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if line.startswith('### '):
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| 115 |
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story.append(Paragraph(line.replace('### ', ''), styles['HeadingStyle']))
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| 116 |
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elif line.startswith('* '):
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| 117 |
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story.append(Paragraph(f"• {line.replace('* ', '', 1)}", styles['BulletStyle']))
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| 118 |
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else:
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| 119 |
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story.append(Paragraph(line, styles['Justify']))
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| 120 |
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| 121 |
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if image_paths and image_analyses:
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| 122 |
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story.append(PageBreak())
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| 123 |
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story.append(Paragraph("Appendix: Medical Images & Findings", styles['HeadingStyle']))
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| 124 |
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| 125 |
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for i, img_path in enumerate(image_paths):
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| 126 |
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if i < len(image_analyses):
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| 127 |
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analysis_text = image_analyses[i]
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| 128 |
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caption_text = "No specific assessment found."
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| 129 |
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assessment_match = re.search(r"3\.\s*\*\*Diagnostic Assessment\*\*\n(.*?)(?=\n\n|\n4\.|\Z)", analysis_text, re.DOTALL | re.IGNORECASE)
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| 130 |
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if assessment_match:
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| 131 |
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caption_text = assessment_match.group(1).strip()
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| 132 |
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else:
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| 133 |
+
findings_match = re.search(r"2\.\s*\*\*Key Findings\*\*\n(.*?)(?=\n\n|\n3\.|\Z)", analysis_text, re.DOTALL | re.IGNORECASE)
|
| 134 |
+
if findings_match:
|
| 135 |
+
caption_text = findings_match.group(1).strip()
|
| 136 |
+
|
| 137 |
+
story.append(Paragraph(f"Image {i+1}", styles['ImageTitle']))
|
| 138 |
+
story.append(Paragraph(f"<i>Summary: {caption_text}</i>", styles['ImageCaption']))
|
| 139 |
+
try:
|
| 140 |
+
img = RLImage(img_path, width=5.5*inch, height=5.5*inch, kind='proportional')
|
| 141 |
+
img.hAlign = 'CENTER'
|
| 142 |
+
story.append(img)
|
| 143 |
+
except Exception as img_e:
|
| 144 |
+
traceback.print_exc()
|
| 145 |
+
story.append(Paragraph(f"<i>Error: Could not display image {i+1}.</i>", styles['Normal']))
|
| 146 |
+
|
| 147 |
+
doc.build(story)
|
| 148 |
+
return pdf_path
|
| 149 |
+
except Exception as e:
|
| 150 |
+
traceback.print_exc()
|
| 151 |
+
return None
|
| 152 |
+
|
| 153 |
+
# ==============================================================================
|
| 154 |
+
# 4. CORE LOGIC
|
| 155 |
+
# ==============================================================================
|
| 156 |
+
|
| 157 |
+
async def update_google_sheet(abha_id, report_text, *image_analyses):
|
| 158 |
+
if not is_sheets_authenticated:
|
| 159 |
+
gr.Warning("Google Sheets not authenticated. Skipping database update.")
|
| 160 |
+
return "Could not update Sheet: Authentication failed."
|
| 161 |
+
try:
|
| 162 |
+
print(f"Attempting to update Google Sheet for ABHA ID: {abha_id}")
|
| 163 |
+
cell = ws.find(abha_id, in_column=1) # Search only in the first column for efficiency
|
| 164 |
+
if not cell:
|
| 165 |
+
gr.Warning(f"ABHA ID {abha_id} not found in Sheet. Skipping database update.")
|
| 166 |
+
return f"Could not update Sheet: ABHA ID {abha_id} not found."
|
| 167 |
+
|
| 168 |
+
row_number = cell.row
|
| 169 |
+
updates_to_make = []
|
| 170 |
+
|
| 171 |
+
# Prepare image analysis updates
|
| 172 |
+
for i, analysis in enumerate(image_analyses):
|
| 173 |
+
if i >= MAX_IMAGES: break
|
| 174 |
+
col_name = f"image{i+1}_summary"
|
| 175 |
+
if analysis and "Pending" not in analysis and "Failed" not in analysis:
|
| 176 |
+
col_letter = SHEET_COLUMN_MAP[col_name]
|
| 177 |
+
updates_to_make.append({'range': f'{col_letter}{row_number}', 'values': [[analysis]]})
|
| 178 |
+
|
| 179 |
+
# Prepare executive summary update
|
| 180 |
+
col_letter = SHEET_COLUMN_MAP["executive_summary"]
|
| 181 |
+
updates_to_make.append({'range': f'{col_letter}{row_number}', 'values': [[report_text]]})
|
| 182 |
+
|
| 183 |
+
if updates_to_make:
|
| 184 |
+
ws.batch_update(updates_to_make)
|
| 185 |
+
print(f"✅ Successfully updated row {row_number} for ABHA ID: {abha_id}")
|
| 186 |
+
return "✅ Database update complete."
|
| 187 |
+
else:
|
| 188 |
+
return "No new data to update in the database."
|
| 189 |
+
except Exception as e:
|
| 190 |
+
print(f"❌ FAILED to update Google Sheet: {e}")
|
| 191 |
+
traceback.print_exc()
|
| 192 |
+
gr.Error(f"Failed to update Google Sheet: {e}")
|
| 193 |
+
return "❌ Database update failed. See console for details."
|
| 194 |
+
|
| 195 |
+
|
| 196 |
+
# **ROBUST FIX APPLIED HERE**
|
| 197 |
+
async def fetch_patient_data(abha_id):
|
| 198 |
+
placeholder_demographics = "*Patient details will appear here.*"
|
| 199 |
+
placeholder_summary = "*Patient history will appear here.*"
|
| 200 |
+
if not abha_id:
|
| 201 |
+
return placeholder_demographics, placeholder_summary
|
| 202 |
+
|
| 203 |
+
try:
|
| 204 |
+
if is_sheets_authenticated:
|
| 205 |
+
# ROBUST METHOD: Use get_all_values() to avoid header errors.
|
| 206 |
+
all_values = ws.get_all_values()
|
| 207 |
+
if len(all_values) < 2:
|
| 208 |
+
return "Spreadsheet has no data records.", ""
|
| 209 |
+
|
| 210 |
+
# Manually construct the DataFrame
|
| 211 |
+
headers = all_values[0]
|
| 212 |
+
data = all_values[1:]
|
| 213 |
+
df = pd.DataFrame(data, columns=headers)
|
| 214 |
+
else:
|
| 215 |
+
df = ws
|
| 216 |
+
|
| 217 |
+
df["abha_id"] = df["abha_id"].astype(str).str.strip()
|
| 218 |
+
row = df[df["abha_id"] == abha_id.strip()]
|
| 219 |
+
|
| 220 |
+
if row.empty:
|
| 221 |
+
return f"**Status:** No record found for ABHA ID: `{abha_id}`", ""
|
| 222 |
+
|
| 223 |
+
record = row.iloc[0]
|
| 224 |
+
patient_info_md = f"""
|
| 225 |
+
**ABHA ID:** {record.get('abha_id', 'N/A')}
|
| 226 |
+
**Name:** {record.get('full_name', 'N/A')}
|
| 227 |
+
**Age:** {record.get('Age', 'N/A')}
|
| 228 |
+
**Weight:** {record.get('weight_kg', 'N/A')} kg
|
| 229 |
+
|
| 230 |
+
---
|
| 231 |
+
**Reason for Visit:**
|
| 232 |
+
{record.get('reason_for_visit', 'N/A')}
|
| 233 |
+
|
| 234 |
+
**Symptoms:**
|
| 235 |
+
{record.get('symptoms_description', 'N/A')}
|
| 236 |
+
"""
|
| 237 |
+
summary_text = f"""
|
| 238 |
+
**Known Allergies:**
|
| 239 |
+
{record.get('allergies', 'N/A')}
|
| 240 |
+
|
| 241 |
+
**Current Medications:**
|
| 242 |
+
{record.get('Medication', 'N/A')}
|
| 243 |
+
|
| 244 |
+
---
|
| 245 |
+
**Previous Visit Summary:**
|
| 246 |
+
{record.get('Summary', 'No previous summary available.')}
|
| 247 |
+
"""
|
| 248 |
+
return patient_info_md.strip(), summary_text.strip()
|
| 249 |
+
except Exception as e:
|
| 250 |
+
traceback.print_exc()
|
| 251 |
+
# Provide a more specific error message if it's the GSpreadException
|
| 252 |
+
if "GSpreadException" in str(e):
|
| 253 |
+
return ("**Error:** Could not read the spreadsheet. Please ensure the first row has unique, non-empty headers for all columns.", "")
|
| 254 |
+
return f"**Error:** An error occurred while fetching data: {e}", ""
|
| 255 |
+
|
| 256 |
+
|
| 257 |
+
async def analyze_images_on_upload(files):
|
| 258 |
+
# This function remains the same.
|
| 259 |
+
gallery_update = gr.update(value=None, visible=False)
|
| 260 |
+
row_updates = [gr.update(visible=False)] * MAX_IMAGES
|
| 261 |
+
image_updates = [gr.update(value=None)] * MAX_IMAGES
|
| 262 |
+
markdown_updates = [gr.update(value="")] * MAX_IMAGES
|
| 263 |
+
|
| 264 |
+
if not files:
|
| 265 |
+
yield (gallery_update, *row_updates, *image_updates, *markdown_updates)
|
| 266 |
+
return
|
| 267 |
+
|
| 268 |
+
if len(files) > MAX_IMAGES:
|
| 269 |
+
gr.Warning(f"Max {MAX_IMAGES} images allowed. Analyzing the first {MAX_IMAGES}.")
|
| 270 |
+
files = files[:MAX_IMAGES]
|
| 271 |
+
|
| 272 |
+
filepaths = [f.name for f in files]
|
| 273 |
+
gallery_update = gr.update(value=filepaths, visible=True)
|
| 274 |
+
|
| 275 |
+
for i in range(MAX_IMAGES):
|
| 276 |
+
if i < len(files):
|
| 277 |
+
row_updates[i] = gr.update(visible=True)
|
| 278 |
+
image_updates[i] = gr.update(value=filepaths[i])
|
| 279 |
+
markdown_updates[i] = gr.update(value="⌛ Pending analysis...")
|
| 280 |
+
else:
|
| 281 |
+
row_updates[i] = gr.update(visible=False)
|
| 282 |
+
image_updates[i] = gr.update(value=None)
|
| 283 |
+
markdown_updates[i] = gr.update(value="")
|
| 284 |
+
|
| 285 |
+
yield (gallery_update, *row_updates, *image_updates, *markdown_updates)
|
| 286 |
+
|
| 287 |
+
if not is_gemini_configured:
|
| 288 |
+
for i in range(len(files)):
|
| 289 |
+
markdown_updates[i] = gr.update(value="### Analysis Disabled\nGemini API not configured.")
|
| 290 |
+
yield (gallery_update, *row_updates, *image_updates, *markdown_updates)
|
| 291 |
+
return
|
| 292 |
+
|
| 293 |
+
for i in range(len(files)):
|
| 294 |
+
markdown_updates[i] = gr.update(value=f"⏳ Analyzing Image {i+1}...")
|
| 295 |
+
yield (gallery_update, *row_updates, *image_updates, *markdown_updates)
|
| 296 |
+
|
| 297 |
+
try:
|
| 298 |
+
img = Image.open(filepaths[i])
|
| 299 |
+
response = await gemini_model.generate_content_async(
|
| 300 |
+
[SYSTEM_PROMPT_IMAGE_ANALYSIS, img],
|
| 301 |
+
generation_config=genai.GenerationConfig(temperature=0.1)
|
| 302 |
+
)
|
| 303 |
+
markdown_updates[i] = gr.update(value=response.text)
|
| 304 |
+
except Exception as e:
|
| 305 |
+
traceback.print_exc()
|
| 306 |
+
markdown_updates[i] = gr.update(value=f"### Analysis Failed\nAn error occurred: {e}")
|
| 307 |
+
|
| 308 |
+
yield (gallery_update, *row_updates, *image_updates, *markdown_updates)
|
| 309 |
+
|
| 310 |
+
|
| 311 |
+
async def generate_detailed_report(abha_id, uploaded_files, *image_analyses):
|
| 312 |
+
# This function remains the same.
|
| 313 |
+
yield "⏳ Generating report...", gr.update(visible=False), gr.update(visible=False, value="")
|
| 314 |
+
|
| 315 |
+
if not is_gemini_configured:
|
| 316 |
+
yield "### Report Generation Disabled\nGemini API not configured.", gr.update(visible=False), gr.update(visible=False, value="")
|
| 317 |
+
return
|
| 318 |
+
|
| 319 |
+
patient_info, visit_summary = await fetch_patient_data(abha_id)
|
| 320 |
+
if "No record found" in patient_info or "Error:" in patient_info:
|
| 321 |
+
yield "### Report Generation Failed\nPlease fetch a valid patient record first.", gr.update(visible=False), gr.update(visible=False, value="")
|
| 322 |
+
return
|
| 323 |
+
|
| 324 |
+
prompt_context = "Here is all the available information for a patient...\n"
|
| 325 |
+
prompt_context += f"## PATIENT DETAILS & CURRENT VISIT INFO:\n{patient_info}\n\n"
|
| 326 |
+
prompt_context += f"## PAST MEDICAL SUMMARY:\n{visit_summary}\n\n"
|
| 327 |
+
analysis_texts = [text for text in image_analyses if text and "Pending" not in text and "Failed" not in text]
|
| 328 |
+
if analysis_texts:
|
| 329 |
+
prompt_context += "## NEW IMAGE ANALYSIS FINDINGS:\n"
|
| 330 |
+
for i, text in enumerate(analysis_texts):
|
| 331 |
+
prompt_context += f"### Analysis of Image {i+1}\n{text}\n\n"
|
| 332 |
+
else:
|
| 333 |
+
prompt_context += "## NEW IMAGE ANALYSIS FINDINGS:\nNo successful image analyses were performed.\n\n"
|
| 334 |
+
|
| 335 |
+
final_prompt = [SYSTEM_PROMPT_DETAILED_REPORT, prompt_context]
|
| 336 |
+
|
| 337 |
+
try:
|
| 338 |
+
response = await gemini_model.generate_content_async(final_prompt, generation_config=genai.GenerationConfig(temperature=0.4))
|
| 339 |
+
markdown_report = response.text
|
| 340 |
+
|
| 341 |
+
valid_image_paths = [f.name for f in uploaded_files[:MAX_IMAGES]] if uploaded_files else []
|
| 342 |
+
pdf_path = create_report_pdf(markdown_report, valid_image_paths, analysis_texts)
|
| 343 |
+
pdf_update = gr.update(value=pdf_path, visible=True) if pdf_path else gr.update(visible=False)
|
| 344 |
+
|
| 345 |
+
yield markdown_report, pdf_update, gr.update(visible=True, value="🔄 Updating database...")
|
| 346 |
+
|
| 347 |
+
status_message = await update_google_sheet(abha_id, markdown_report, *analysis_texts)
|
| 348 |
+
|
| 349 |
+
yield markdown_report, pdf_update, gr.update(visible=True, value=status_message)
|
| 350 |
+
await asyncio.sleep(3)
|
| 351 |
+
yield markdown_report, pdf_update, gr.update(visible=False)
|
| 352 |
+
|
| 353 |
+
except Exception as e:
|
| 354 |
+
traceback.print_exc()
|
| 355 |
+
yield f"### Report Generation Failed\nAn error occurred: {e}", gr.update(visible=False), gr.update(visible=False)
|
| 356 |
+
|
| 357 |
+
|
| 358 |
+
# ==============================================================================
|
| 359 |
+
# 5. GRADIO UI LAYOUT
|
| 360 |
+
# ==============================================================================
|
| 361 |
+
with gr.Blocks(theme=Base(), title="Advanced Medical Report Generator") as app:
|
| 362 |
+
# This section remains the same.
|
| 363 |
+
gr.Markdown("# Advanced Medical Report Generator")
|
| 364 |
+
|
| 365 |
+
with gr.Row():
|
| 366 |
+
abha_id_input = gr.Textbox(label="Enter Patient ABHA ID", scale=3)
|
| 367 |
+
fetch_button = gr.Button("Fetch Patient Details", variant="primary", scale=1)
|
| 368 |
+
|
| 369 |
+
with gr.Row(variant="panel"):
|
| 370 |
+
with gr.Column(scale=1):
|
| 371 |
+
with gr.Accordion("Patient Demographics & Current Visit", open=True):
|
| 372 |
+
patient_info_output = gr.Markdown("*Patient details will appear here.*")
|
| 373 |
+
with gr.Column(scale=1):
|
| 374 |
+
with gr.Accordion("Medical History & Visit Summary", open=True):
|
| 375 |
+
summary_output = gr.Markdown("*Patient history will appear here.*")
|
| 376 |
+
|
| 377 |
+
gr.Markdown("---")
|
| 378 |
+
|
| 379 |
+
gr.Markdown("### 1. Upload Scans & View AI Analysis")
|
| 380 |
+
with gr.Column(variant="panel"):
|
| 381 |
+
image_uploader = gr.File(label=f"Upload up to {MAX_IMAGES} images", file_count="multiple", file_types=["image"])
|
| 382 |
+
image_gallery = gr.Gallery(label="Image Preview", visible=False, columns=5, height="auto")
|
| 383 |
+
|
| 384 |
+
analysis_rows, analysis_images, analysis_markdowns = [], [], []
|
| 385 |
+
for i in range(MAX_IMAGES):
|
| 386 |
+
with gr.Row(visible=False, variant='panel') as row:
|
| 387 |
+
with gr.Column(scale=1, min_width=200):
|
| 388 |
+
img = gr.Image(interactive=False, show_label=False)
|
| 389 |
+
with gr.Column(scale=2):
|
| 390 |
+
md = gr.Markdown()
|
| 391 |
+
analysis_rows.append(row)
|
| 392 |
+
analysis_images.append(img)
|
| 393 |
+
analysis_markdowns.append(md)
|
| 394 |
+
|
| 395 |
+
gr.Markdown("---")
|
| 396 |
+
gr.Markdown("### 2. Generate Final Synthesized Report")
|
| 397 |
+
with gr.Column(variant='panel'):
|
| 398 |
+
generate_report_button = gr.Button("Generate Detailed Report & Update Database", variant="primary")
|
| 399 |
+
status_output = gr.Markdown(visible=False)
|
| 400 |
+
gr.Markdown("#### Report Preview")
|
| 401 |
+
report_preview_output = gr.Markdown("*Click the button above to generate a comprehensive, synthesized report.*")
|
| 402 |
+
download_report_button = gr.File(label="Download Report (PDF)", visible=False)
|
| 403 |
+
|
| 404 |
+
# ==============================================================================
|
| 405 |
+
# 6. EVENT LISTENERS
|
| 406 |
+
# ==============================================================================
|
| 407 |
+
# This section remains the same.
|
| 408 |
+
fetch_button.click(
|
| 409 |
+
fn=fetch_patient_data,
|
| 410 |
+
inputs=[abha_id_input],
|
| 411 |
+
outputs=[patient_info_output, summary_output]
|
| 412 |
+
)
|
| 413 |
+
|
| 414 |
+
image_uploader.change(
|
| 415 |
+
fn=analyze_images_on_upload,
|
| 416 |
+
inputs=[image_uploader],
|
| 417 |
+
outputs=[image_gallery, *analysis_rows, *analysis_images, *analysis_markdowns]
|
| 418 |
+
)
|
| 419 |
+
|
| 420 |
+
generate_report_button.click(
|
| 421 |
+
fn=generate_detailed_report,
|
| 422 |
+
inputs=[
|
| 423 |
+
abha_id_input,
|
| 424 |
+
image_uploader,
|
| 425 |
+
*analysis_markdowns
|
| 426 |
+
],
|
| 427 |
+
outputs=[report_preview_output, download_report_button, status_output]
|
| 428 |
+
)
|
| 429 |
+
|
| 430 |
+
# ==============================================================================
|
| 431 |
+
# 7. LAUNCH APP
|
| 432 |
+
# ==============================================================================
|
| 433 |
+
if __name__ == "__main__":
|
| 434 |
+
app.launch(share=True, debug=True)
|
categorizer_prompt.txt
ADDED
|
@@ -0,0 +1,21 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
You are a medical information categorization engine. Your sole purpose is to analyze a new piece of conversation and determine which section of a standard medical note it belongs to.
|
| 2 |
+
|
| 3 |
+
**CRITICAL INSTRUCTIONS:**
|
| 4 |
+
1. Analyze the "NEW TEXT SNIPPET". Use the "FULL TRANSCRIPT HISTORY" for context if needed.
|
| 5 |
+
2. Identify which single medical note section the new information belongs to. The available sections are: `Patient Information`, `History of Present Illness (HPI)`, `Past Medical History (PMH)`, `Medication History`, `Allergies`.
|
| 6 |
+
3. Summarize the new piece of information into a single, concise bullet point.
|
| 7 |
+
4. You MUST respond in a strict JSON format. **Your response MUST be a JSON object with two keys: "section" and "content".** Do not respond with a plain string.
|
| 8 |
+
5. If the new text is conversational filler, a greeting, or does not belong in any medical section, you MUST return the JSON object: `{"section": "N/A", "content": ""}`.
|
| 9 |
+
6. Do not invent information. If the snippet is unclear, use the "N/A" response.
|
| 10 |
+
|
| 11 |
+
**Example 1:**
|
| 12 |
+
- NEW TEXT SNIPPET: "and the pain has been going on for about three days now"
|
| 13 |
+
- YOUR RESPONSE: `{"section": "HPI", "content": "- Onset was three days ago."}`
|
| 14 |
+
|
| 15 |
+
**Example 2:**
|
| 16 |
+
- NEW TEXT SNIPPET: "I'm allergic to penicillin, it gives me hives"
|
| 17 |
+
- YOUR RESPONSE: `{"section": "Allergies", "content": "- Penicillin (causes hives)."}`
|
| 18 |
+
|
| 19 |
+
**Example 3:**
|
| 20 |
+
- NEW TEXT SNIPPET: "okay thank you so much doc"
|
| 21 |
+
- YOUR RESPONSE: `{"section": "N/A", "content": ""}`
|
dbott-464906-c46c8756b829.json
ADDED
|
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"type": "service_account",
|
| 3 |
+
"project_id": "dbott-464906",
|
| 4 |
+
"private_key_id": "c46c8756b8299f42f67124c7004ef65e7b151a0a",
|
| 5 |
+
"private_key": "-----BEGIN PRIVATE KEY-----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\nEsxZ3XcbS36sHs7ofT/QG+k=\n-----END PRIVATE KEY-----\n",
|
| 6 |
+
"client_email": "spreedsheet1@dbott-464906.iam.gserviceaccount.com",
|
| 7 |
+
"client_id": "113104737724933717188",
|
| 8 |
+
"auth_uri": "https://accounts.google.com/o/oauth2/auth",
|
| 9 |
+
"token_uri": "https://oauth2.googleapis.com/token",
|
| 10 |
+
"auth_provider_x509_cert_url": "https://www.googleapis.com/oauth2/v1/certs",
|
| 11 |
+
"client_x509_cert_url": "https://www.googleapis.com/robot/v1/metadata/x509/spreedsheet1%40dbott-464906.iam.gserviceaccount.com",
|
| 12 |
+
"universe_domain": "googleapis.com"
|
| 13 |
+
}
|
doctor_prompt.txt
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
You are a clinical decision support assistant for a doctor. Your role is to listen to the live transcript of a patient encounter and provide real-time, actionable insights.
|
| 2 |
+
|
| 3 |
+
**CRITICAL INSTRUCTIONS:**
|
| 4 |
+
1. Analyze the **FULL CONVERSATION TRANSCRIPT**.
|
| 5 |
+
2. Your output MUST be in two distinct sections: "Suggested Next Steps" and "Key Questions Asked by Doctor".
|
| 6 |
+
3. Under "Suggested Next Steps," recommend potential actions, tests, or follow-ups based on the patient's symptoms and history (e.g., "Consider ordering a CBC," "Recommend a follow-up in 2 weeks").
|
| 7 |
+
4. Under "Key Questions Asked by Doctor," list the important diagnostic questions the doctor has asked the patient so far. This helps the doctor track what has been covered.
|
| 8 |
+
5. Be concise and to the point.
|
| 9 |
+
6. Format the output using clean Markdown (`###` for headers, `-` for bullets).
|
| 10 |
+
7. If there isn't enough information for a section, you can state "Awaiting more information..." under the relevant heading.
|
| 11 |
+
8. Your output MUST ONLY be the two-section Markdown note. Do not add any other text or explanations.
|
jarvis_command_prompt.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
You are a highly efficient command parser. Your sole function is to analyze a given text segment for the activation keyword "jarvis".
|
| 2 |
+
|
| 3 |
+
**CRITICAL INSTRUCTIONS:**
|
| 4 |
+
1. Read the "TEXT SEGMENT TO ANALYZE".
|
| 5 |
+
2. If you find the keyword "jarvis" (case-insensitive), extract the specific and complete command or question that immediately follows it.
|
| 6 |
+
3. Your output MUST BE ONLY the extracted command text.
|
| 7 |
+
4. If the keyword "jarvis" is NOT present in the text, you MUST respond with the exact string: `[NO_COMMAND]`
|
| 8 |
+
5. Do not add any greetings, explanations, or introductory phrases like "The command is:".
|
jarvis_prompt.txt
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
You are a highly efficient command parser. Your sole function is to analyze a given text segment for the activation keyword "jarvis".
|
| 2 |
+
|
| 3 |
+
**CRITICAL INSTRUCTIONS:**
|
| 4 |
+
1. Read the "TEXT SEGMENT TO ANALYZE".
|
| 5 |
+
2. If you find the keyword "jarvis" (case-insensitive), extract the specific and complete command or question that immediately follows it.
|
| 6 |
+
3. Your output MUST BE ONLY the extracted command text.
|
| 7 |
+
4. If the keyword "jarvis" is NOT present in the text, you MUST respond with the exact string: `[NO_COMMAND]`
|
| 8 |
+
5. Do not add any greetings, explanations, or introductory phrases like "The command is:".
|
system_prompt.txt
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
You are an expert medical scribe. Your task is to generate a structured clinical note from a real-time conversation transcript.
|
| 2 |
+
|
| 3 |
+
**CRITICAL INSTRUCTIONS:**
|
| 4 |
+
1. Analyze the **FULL CONVERSATION TRANSCRIPT**.
|
| 5 |
+
2. Use the **PREVIOUS SUMMARY** as a reference to build upon. Do not repeat information.
|
| 6 |
+
3. **ONLY create a heading and its corresponding section if you find relevant information for it in the transcript.** DO NOT output empty sections or headers like "Past Medical History:" if there is no such information.
|
| 7 |
+
4. Format the output using clean and professional Markdown. Use `###` for main headings (e.g., `### History of Present Illness (HPI)`) and `-` for bullet points.
|
| 8 |
+
5. Keep the language concise and clinical.
|
| 9 |
+
6. Your output MUST ONLY be the Markdown-formatted note. Do not include any other text, greetings, or explanations.
|
| 10 |
+
|
| 11 |
+
**Available Section Headings (Use only when applicable):**
|
| 12 |
+
- Patient Information
|
| 13 |
+
- History of Present Illness (HPI)
|
| 14 |
+
- Past Medical History (PMH)
|
| 15 |
+
- Medication History
|
| 16 |
+
- Allergies
|