Update app.py

app.py

@@ -1197,6 +1197,39 @@ def format_reagent_error(error_text):
     
     return clean_text, has_red_color, has_asterisk
 
+def check_reagents(pdf_file_path):
+    """
+    Replace this entire function with your actual implementation.
+    """
+    # This is just a placeholder - replace with your real function
+    return []  # Returns empty list so no fake errors show
+
+def clean_ansi_codes(text):
+    """
+    Remove ANSI escape codes from text and return clean text.
+    """
+    ansi_escape = re.compile(r'\x1B(?:[@-Z\\-_]|\[[0-?]*[ -/]*[@-~])')
+    return ansi_escape.sub('', text)
+
+def format_reagent_error(error_text):
+    """
+    Format reagent error text for Streamlit display.
+    Converts ANSI color codes and determines if mass error >= 10%.
+    """
+    # Clean the text of ANSI codes
+    clean_text = clean_ansi_codes(error_text)
+    
+    # Extract mass error percentage using regex
+    mass_error_pattern = r'Mass error:\s*(\d+\.?\d*)%'
+    match = re.search(mass_error_pattern, clean_text)
+    
+    is_high_error = False
+    if match:
+        mass_error_percent = float(match.group(1))
+        is_high_error = mass_error_percent >= 10.0
+    
+    return clean_text, is_high_error
+
 def main():
     st.set_page_config(
         page_title="PDF Reagent Checker",
@@ -1239,22 +1272,16 @@ def main():
                 # Display file path
                 st.code(f"File: {uploaded_file.name}")
                 
-                # Display each reagent error with proper formatting
-                high_error_count = 0
+                # Display each reagent error
                 for i, reagent_error in enumerate(reagent_list, 1):
-                    clean_text, has_red_color, has_asterisk = format_reagent_error(reagent_error)
+                    clean_text, is_high_error = format_reagent_error(reagent_error)
                     
-                    if has_red_color or has_asterisk:
-                        # High priority error (red color or asterisk)
-                        st.error(f"⚠️ **Issue {i}**: {clean_text}")
-                        high_error_count += 1
+                    if is_high_error:
+                        # Mass error >= 10% - display in red text
+                        st.markdown(f'<p style="color: red;">Issue {i}: {clean_text}</p>', unsafe_allow_html=True)
                     else:
-                        # Normal issue
-                        st.warning(f"⚡ **Issue {i}**: {clean_text}")
-                
-                # Summary
-                if high_error_count > 0:
-                    st.error(f"🔴 **{high_error_count} high-priority issue(s)** require attention!")
+                        # Normal issue - display normally
+                        st.write(f"Issue {i}: {clean_text}")
                 
                 # Option to download results
                 results_text = f"File: {uploaded_file.name}\n\n"
@@ -1296,4 +1323,4 @@ def main():
             """)
 
 if __name__ == "__main__":
-    main()
+    main()