MeMo Modelling · A*STAR

Gene Expression Bootstrapper

Fills in missing expression values for unmapped genes by sampling from the same metabolic subsystem. Output serves as input for MeMo.

Parameters

Optional

Bootstrap iterations

Number of output CSV files to generate. Default of 1,000 is recommended.

1,000

1005,000

Higher values = more robust results, longer processing time.

Step 1

Prefixed model files

One file per species — output from Step 2 of SBML2FEA.

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Drop file here or click to browse .xlsx

Step 2

Identifier mapping files

One file per species, in the same order as model files — output from Step 3 of SBML2FEA.

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Drop file here or click to browse .xlsx

Step 3

Combined gene expression file

Normalised gene expression counts for all species and samples from your metatranscriptomics data.

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Drop file here or click to browse · single file only .csv