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  1. Dockerfile +13 -0
  2. README.md +23 -10
  3. app.py +82 -0
  4. requirements.txt +7 -0
Dockerfile ADDED
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+ FROM python:3.11-slim
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+
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+ RUN apt-get update \
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+ && apt-get install -y --no-install-recommends gcc libgomp1 \
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+ && rm -rf /var/lib/apt/lists/*
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+
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+ WORKDIR /app
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+ COPY . .
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+ RUN pip install --upgrade pip
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+ RUN pip install -r requirements.txt
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+
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+ EXPOSE 7860
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+ CMD ["uvicorn", "app:app", "--host", "0.0.0.0", "--port", "7860"]
README.md CHANGED
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- ---
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- title: NeuroHealth
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- emoji: 🏃
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- colorFrom: blue
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- colorTo: yellow
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- sdk: docker
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- pinned: false
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- ---
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-
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- Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ # NeuroHealth Alzheimer MRI Space
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+
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+ This space exposes Alzheimer's MRI models saved in `backend/saved_models`.
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+
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+ ## Endpoints
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+
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+ - `GET /health` — model loading status
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+ - `GET /models` — available Alzheimer's MRI models
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+ - `POST /predict/image?model_key=<key>` — MRI image prediction
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+
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+ ## Supported model keys
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+
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+ - `ad_dn121`
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+ - `ad_dn169`
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+ - `ad_dn201`
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+ - `ad_homogeneous`
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+
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+ ## Run locally with Docker
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+
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+ ```bash
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+ docker build -t neurohealth-ad-mri .
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+ docker run --rm -p 7860:7860 neurohealth-ad-mri
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+ ```
app.py ADDED
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+ import sys
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+ from pathlib import Path
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+
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+ REPO_ROOT = Path(__file__).resolve().parent.parent
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+ BACKEND_PATH = str(REPO_ROOT / "backend")
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+ if BACKEND_PATH not in sys.path:
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+ sys.path.insert(0, BACKEND_PATH)
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+
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+ from fastapi import FastAPI, UploadFile, File, HTTPException, Query
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+ from fastapi.middleware.cors import CORSMiddleware
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+ from app.models.model_manager import get_model_manager, MODEL_CONFIGS, ENSEMBLE_CONFIGS
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+
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+ app = FastAPI(
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+ title="NeuroHealth Alzheimer MRI Space",
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+ version="1.0.0",
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+ description="FastAPI wrapper for Alzheimer's MRI models stored in backend/saved_models.",
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+ )
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+
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+ app.add_middleware(
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+ CORSMiddleware,
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+ allow_origins=["*"],
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+ allow_credentials=True,
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+ allow_methods=["*"],
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+ allow_headers=["*"],
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+ )
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+
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+ model_manager = get_model_manager()
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+ AD_KEYS = {"ad_dn121", "ad_dn169", "ad_dn201", "ad_homogeneous"}
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+
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+
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+ @app.get("/")
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+ async def root():
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+ return {
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+ "message": "NeuroHealth Alzheimer MRI Space",
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+ "supported_endpoints": ["/health", "/models", "/predict/image"],
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+ }
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+
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+
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+ @app.get("/health")
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+ async def health():
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+ statuses = model_manager.get_model_status()
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+ return {
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+ "status": "ok",
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+ "model_status": {k: v for k, v in statuses.items() if k in AD_KEYS},
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+ "available_models": [m["key"] for m in model_manager.get_available_models("alzheimers")],
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+ }
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+
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+
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+ @app.get("/models")
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+ async def get_models():
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+ models = model_manager.get_available_models("alzheimers")
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+ models.append({
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+ "key": "ad_homogeneous",
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+ "name": "Alzheimer's MRI Homogeneous Ensemble (DenseNet 121+169+201)",
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+ "condition": "alzheimers",
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+ "imaging_type": "mri",
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+ "type": "ensemble",
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+ })
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+ return {"models": models}
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+
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+
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+ @app.post("/predict/image")
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+ async def predict_image(
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+ model_key: str = Query(..., description="Model key such as ad_dn121 or ad_homogeneous"),
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+ file: UploadFile = File(...),
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+ ):
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+ if model_key not in AD_KEYS:
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+ raise HTTPException(status_code=400, detail=f"Unknown Alzheimer MRI model key: {model_key}")
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+
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+ image_bytes = await file.read()
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+ filename = file.filename or ""
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+ config = MODEL_CONFIGS.get(model_key, {})
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+
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+ if model_key == "ad_homogeneous":
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+ result = model_manager.predict_ensemble(model_key, image_bytes, filename)
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+ else:
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+ result = model_manager.predict_image(model_key, image_bytes, filename)
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+
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+ if "error" in result:
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+ raise HTTPException(status_code=400, detail=result["error"])
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+
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+ return result
requirements.txt ADDED
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+ fastapi
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+ uvicorn[standard]
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+ torch
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+ torchvision
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+ pillow
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+ numpy
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+ pydantic