Spaces:
Runtime error
Runtime error
Update app.py
Browse files
app.py
CHANGED
|
@@ -6,34 +6,72 @@ import torch.nn as nn
|
|
| 6 |
import numpy as np
|
| 7 |
|
| 8 |
app = FastAPI(
|
| 9 |
-
title="NeuroHealth EEG API",
|
| 10 |
-
version="
|
| 11 |
)
|
| 12 |
|
| 13 |
DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
|
| 14 |
|
| 15 |
# =========================================================
|
| 16 |
-
#
|
| 17 |
# =========================================================
|
| 18 |
|
| 19 |
AD_CLASSES = ["Alzheimer", "FTD", "Control"]
|
| 20 |
PD_CLASSES = ["Parkinson", "Control"]
|
| 21 |
|
| 22 |
# =========================================================
|
| 23 |
-
#
|
| 24 |
# =========================================================
|
| 25 |
|
| 26 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 27 |
|
| 28 |
# =========================================================
|
| 29 |
-
#
|
| 30 |
# =========================================================
|
| 31 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 32 |
class EEG_CNN(nn.Module):
|
| 33 |
def __init__(self, output_dim):
|
| 34 |
super().__init__()
|
| 35 |
|
| 36 |
-
self.conv1 = nn.Conv1d(
|
| 37 |
self.bn1 = nn.BatchNorm1d(32)
|
| 38 |
|
| 39 |
self.conv2 = nn.Conv1d(32, 64, kernel_size=5)
|
|
@@ -50,55 +88,52 @@ class EEG_CNN(nn.Module):
|
|
| 50 |
x = torch.relu(self.bn2(self.conv2(x)))
|
| 51 |
x = torch.relu(self.bn3(self.conv3(x)))
|
| 52 |
|
| 53 |
-
x = self.pool(x)
|
| 54 |
-
x = x.squeeze(-1)
|
| 55 |
return self.fc(x)
|
| 56 |
|
| 57 |
# =========================================================
|
| 58 |
-
# LOAD MODELS
|
| 59 |
# =========================================================
|
| 60 |
|
| 61 |
-
|
| 62 |
-
|
|
|
|
|
|
|
| 63 |
|
| 64 |
-
|
| 65 |
-
|
|
|
|
| 66 |
|
| 67 |
-
|
| 68 |
-
|
|
|
|
|
|
|
| 69 |
|
| 70 |
-
|
| 71 |
-
|
| 72 |
-
|
| 73 |
-
# REQUEST SCHEMA
|
| 74 |
-
# =========================================================
|
| 75 |
|
| 76 |
-
|
| 77 |
-
features: list
|
| 78 |
|
| 79 |
# =========================================================
|
| 80 |
-
#
|
| 81 |
# =========================================================
|
| 82 |
|
| 83 |
-
def
|
| 84 |
-
x =
|
| 85 |
|
| 86 |
-
|
| 87 |
-
|
| 88 |
-
raise ValueError("Expected 95 features")
|
| 89 |
|
| 90 |
-
|
| 91 |
-
|
| 92 |
-
x = x.to(DEVICE)
|
| 93 |
|
| 94 |
with torch.no_grad():
|
| 95 |
-
|
| 96 |
-
probs = torch.softmax(
|
| 97 |
|
| 98 |
pred = int(np.argmax(probs))
|
| 99 |
-
|
| 100 |
-
|
| 101 |
-
return pred, confidence, probs.tolist()
|
| 102 |
|
| 103 |
# =========================================================
|
| 104 |
# ROUTES
|
|
@@ -106,40 +141,58 @@ def predict_model(model, features):
|
|
| 106 |
|
| 107 |
@app.get("/")
|
| 108 |
def home():
|
| 109 |
-
return {"message": "NeuroHealth
|
| 110 |
|
| 111 |
# =========================================================
|
| 112 |
-
#
|
| 113 |
# =========================================================
|
| 114 |
|
| 115 |
-
@app.post("/predict/
|
| 116 |
-
def
|
|
|
|
| 117 |
|
| 118 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 119 |
|
| 120 |
return {
|
| 121 |
-
"
|
| 122 |
-
"
|
| 123 |
-
"
|
| 124 |
-
|
| 125 |
-
for i in range(len(AD_CLASSES))
|
| 126 |
-
}
|
| 127 |
}
|
| 128 |
|
| 129 |
# =========================================================
|
| 130 |
-
#
|
| 131 |
# =========================================================
|
| 132 |
|
| 133 |
-
@app.post("/predict/
|
| 134 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 135 |
|
| 136 |
-
|
|
|
|
|
|
|
| 137 |
|
| 138 |
return {
|
| 139 |
-
"
|
| 140 |
-
"
|
| 141 |
-
"
|
| 142 |
-
|
| 143 |
-
for i in range(len(PD_CLASSES))
|
| 144 |
-
}
|
| 145 |
}
|
|
|
|
| 6 |
import numpy as np
|
| 7 |
|
| 8 |
app = FastAPI(
|
| 9 |
+
title="NeuroHealth Multi-Model EEG API",
|
| 10 |
+
version="2.0"
|
| 11 |
)
|
| 12 |
|
| 13 |
DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
|
| 14 |
|
| 15 |
# =========================================================
|
| 16 |
+
# LABELS
|
| 17 |
# =========================================================
|
| 18 |
|
| 19 |
AD_CLASSES = ["Alzheimer", "FTD", "Control"]
|
| 20 |
PD_CLASSES = ["Parkinson", "Control"]
|
| 21 |
|
| 22 |
# =========================================================
|
| 23 |
+
# INPUT
|
| 24 |
# =========================================================
|
| 25 |
|
| 26 |
+
class EEGRequest(BaseModel):
|
| 27 |
+
features: list
|
| 28 |
+
|
| 29 |
+
# =========================================================
|
| 30 |
+
# DEVICE
|
| 31 |
+
# =========================================================
|
| 32 |
+
|
| 33 |
+
def to_tensor(features):
|
| 34 |
+
return torch.tensor(features, dtype=torch.float32)
|
| 35 |
|
| 36 |
# =========================================================
|
| 37 |
+
# ===================== MODELS ============================
|
| 38 |
# =========================================================
|
| 39 |
|
| 40 |
+
# ---------------- MLP (CSV MODELS) ----------------------
|
| 41 |
+
|
| 42 |
+
INPUT_DIM = 95
|
| 43 |
+
|
| 44 |
+
class MLP(nn.Module):
|
| 45 |
+
def __init__(self, output_dim):
|
| 46 |
+
super().__init__()
|
| 47 |
+
self.net = nn.Sequential(
|
| 48 |
+
nn.Linear(INPUT_DIM, 512),
|
| 49 |
+
nn.BatchNorm1d(512),
|
| 50 |
+
nn.GELU(),
|
| 51 |
+
nn.Dropout(0.3),
|
| 52 |
+
|
| 53 |
+
nn.Linear(512, 256),
|
| 54 |
+
nn.BatchNorm1d(256),
|
| 55 |
+
nn.GELU(),
|
| 56 |
+
nn.Dropout(0.3),
|
| 57 |
+
|
| 58 |
+
nn.Linear(256, 128),
|
| 59 |
+
nn.GELU(),
|
| 60 |
+
|
| 61 |
+
nn.Linear(128, output_dim)
|
| 62 |
+
)
|
| 63 |
+
|
| 64 |
+
def forward(self, x):
|
| 65 |
+
return self.net(x)
|
| 66 |
+
|
| 67 |
+
|
| 68 |
+
# ---------------- CNN (EEG MODELS) ----------------------
|
| 69 |
+
|
| 70 |
class EEG_CNN(nn.Module):
|
| 71 |
def __init__(self, output_dim):
|
| 72 |
super().__init__()
|
| 73 |
|
| 74 |
+
self.conv1 = nn.Conv1d(19, 32, kernel_size=7)
|
| 75 |
self.bn1 = nn.BatchNorm1d(32)
|
| 76 |
|
| 77 |
self.conv2 = nn.Conv1d(32, 64, kernel_size=5)
|
|
|
|
| 88 |
x = torch.relu(self.bn2(self.conv2(x)))
|
| 89 |
x = torch.relu(self.bn3(self.conv3(x)))
|
| 90 |
|
| 91 |
+
x = self.pool(x).squeeze(-1)
|
|
|
|
| 92 |
return self.fc(x)
|
| 93 |
|
| 94 |
# =========================================================
|
| 95 |
+
# LOAD ALL MODELS
|
| 96 |
# =========================================================
|
| 97 |
|
| 98 |
+
# -------- AD MODELS --------
|
| 99 |
+
ad_mlp = MLP(3).to(DEVICE)
|
| 100 |
+
ad_mlp.load_state_dict(torch.load("AD_MLP.pt", map_location=DEVICE))
|
| 101 |
+
ad_mlp.eval()
|
| 102 |
|
| 103 |
+
ad_cnn = EEG_CNN(3).to(DEVICE)
|
| 104 |
+
ad_cnn.load_state_dict(torch.load("AD_eeg_cnn.pth", map_location=DEVICE))
|
| 105 |
+
ad_cnn.eval()
|
| 106 |
|
| 107 |
+
# -------- PD MODELS --------
|
| 108 |
+
pd_mlp = MLP(2).to(DEVICE)
|
| 109 |
+
pd_mlp.load_state_dict(torch.load("PD_MLP.pt", map_location=DEVICE))
|
| 110 |
+
pd_mlp.eval()
|
| 111 |
|
| 112 |
+
pd_cnn = EEG_CNN(2).to(DEVICE)
|
| 113 |
+
pd_cnn.load_state_dict(torch.load("PD_eeg_cnn.pth", map_location=DEVICE))
|
| 114 |
+
pd_cnn.eval()
|
|
|
|
|
|
|
| 115 |
|
| 116 |
+
print("All models loaded successfully")
|
|
|
|
| 117 |
|
| 118 |
# =========================================================
|
| 119 |
+
# PREDICTION ENGINE
|
| 120 |
# =========================================================
|
| 121 |
|
| 122 |
+
def predict(model, features, mode="mlp"):
|
| 123 |
+
x = to_tensor(features)
|
| 124 |
|
| 125 |
+
if mode == "mlp":
|
| 126 |
+
x = x.unsqueeze(0).to(DEVICE)
|
|
|
|
| 127 |
|
| 128 |
+
elif mode == "cnn":
|
| 129 |
+
x = x.view(19, 5).unsqueeze(0).to(DEVICE)
|
|
|
|
| 130 |
|
| 131 |
with torch.no_grad():
|
| 132 |
+
out = model(x)
|
| 133 |
+
probs = torch.softmax(out, dim=1).cpu().numpy()[0]
|
| 134 |
|
| 135 |
pred = int(np.argmax(probs))
|
| 136 |
+
return pred, float(probs[pred]), probs.tolist()
|
|
|
|
|
|
|
| 137 |
|
| 138 |
# =========================================================
|
| 139 |
# ROUTES
|
|
|
|
| 141 |
|
| 142 |
@app.get("/")
|
| 143 |
def home():
|
| 144 |
+
return {"message": "NeuroHealth Multi-Model API Running"}
|
| 145 |
|
| 146 |
# =========================================================
|
| 147 |
+
# AD ENDPOINTS
|
| 148 |
# =========================================================
|
| 149 |
|
| 150 |
+
@app.post("/predict/ad/mlp")
|
| 151 |
+
def ad_mlp_predict(req: EEGRequest):
|
| 152 |
+
p, c, prob = predict(ad_mlp, req.features, "mlp")
|
| 153 |
|
| 154 |
+
return {
|
| 155 |
+
"model": "AD_MLP",
|
| 156 |
+
"prediction": AD_CLASSES[p],
|
| 157 |
+
"confidence": c,
|
| 158 |
+
"probabilities": dict(zip(AD_CLASSES, prob))
|
| 159 |
+
}
|
| 160 |
+
|
| 161 |
+
|
| 162 |
+
@app.post("/predict/ad/eeg")
|
| 163 |
+
def ad_cnn_predict(req: EEGRequest):
|
| 164 |
+
p, c, prob = predict(ad_cnn, req.features, "cnn")
|
| 165 |
|
| 166 |
return {
|
| 167 |
+
"model": "AD_EEG_CNN",
|
| 168 |
+
"prediction": AD_CLASSES[p],
|
| 169 |
+
"confidence": c,
|
| 170 |
+
"probabilities": dict(zip(AD_CLASSES, prob))
|
|
|
|
|
|
|
| 171 |
}
|
| 172 |
|
| 173 |
# =========================================================
|
| 174 |
+
# PD ENDPOINTS
|
| 175 |
# =========================================================
|
| 176 |
|
| 177 |
+
@app.post("/predict/pd/mlp")
|
| 178 |
+
def pd_mlp_predict(req: EEGRequest):
|
| 179 |
+
p, c, prob = predict(pd_mlp, req.features, "mlp")
|
| 180 |
+
|
| 181 |
+
return {
|
| 182 |
+
"model": "PD_MLP",
|
| 183 |
+
"prediction": PD_CLASSES[p],
|
| 184 |
+
"confidence": c,
|
| 185 |
+
"probabilities": dict(zip(PD_CLASSES, prob))
|
| 186 |
+
}
|
| 187 |
+
|
| 188 |
|
| 189 |
+
@app.post("/predict/pd/eeg")
|
| 190 |
+
def pd_cnn_predict(req: EEGRequest):
|
| 191 |
+
p, c, prob = predict(pd_cnn, req.features, "cnn")
|
| 192 |
|
| 193 |
return {
|
| 194 |
+
"model": "PD_EEG_CNN",
|
| 195 |
+
"prediction": PD_CLASSES[p],
|
| 196 |
+
"confidence": c,
|
| 197 |
+
"probabilities": dict(zip(PD_CLASSES, prob))
|
|
|
|
|
|
|
| 198 |
}
|