Spaces:
Runtime error
Runtime error
Update app.py
Browse files
app.py
CHANGED
|
@@ -4,7 +4,7 @@ import torch
|
|
| 4 |
import torch.nn as nn
|
| 5 |
import numpy as np
|
| 6 |
|
| 7 |
-
app = FastAPI(title="NeuroHealth EEG API", version="RESET-
|
| 8 |
|
| 9 |
DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 10 |
|
|
@@ -15,59 +15,56 @@ AD_CLASSES = ["Alzheimer", "FTD", "Control"]
|
|
| 15 |
PD_CLASSES = ["Parkinson", "Control"]
|
| 16 |
|
| 17 |
# ======================
|
| 18 |
-
# INPUT
|
| 19 |
# ======================
|
| 20 |
class EEGRequest(BaseModel):
|
| 21 |
features: list
|
| 22 |
|
| 23 |
# ======================
|
| 24 |
-
# AD MODEL
|
| 25 |
# ======================
|
| 26 |
class EEG_CNN_AD(nn.Module):
|
| 27 |
def __init__(self):
|
| 28 |
super().__init__()
|
| 29 |
self.conv1 = nn.Conv1d(19, 32, 7, padding=3)
|
| 30 |
self.bn1 = nn.BatchNorm1d(32)
|
| 31 |
-
|
| 32 |
self.conv2 = nn.Conv1d(32, 64, 5, padding=2)
|
| 33 |
self.bn2 = nn.BatchNorm1d(64)
|
| 34 |
-
|
| 35 |
self.conv3 = nn.Conv1d(64, 128, 3, padding=1)
|
| 36 |
self.bn3 = nn.BatchNorm1d(128)
|
| 37 |
-
|
| 38 |
self.pool = nn.AdaptiveAvgPool1d(1)
|
| 39 |
self.fc = nn.Linear(128, 3)
|
| 40 |
|
| 41 |
def forward(self, x):
|
| 42 |
x = x.view(x.size(0), 19, 76)
|
| 43 |
-
|
| 44 |
x = torch.relu(self.bn1(self.conv1(x)))
|
| 45 |
x = torch.relu(self.bn2(self.conv2(x)))
|
| 46 |
x = torch.relu(self.bn3(self.conv3(x)))
|
| 47 |
-
|
| 48 |
x = self.pool(x).squeeze(-1)
|
| 49 |
return self.fc(x)
|
| 50 |
|
| 51 |
# ======================
|
| 52 |
-
# PD MODEL (
|
| 53 |
# ======================
|
| 54 |
-
class
|
| 55 |
def __init__(self):
|
| 56 |
super().__init__()
|
| 57 |
-
self.
|
| 58 |
-
|
| 59 |
-
|
| 60 |
-
|
| 61 |
-
|
| 62 |
-
|
| 63 |
-
|
| 64 |
-
|
| 65 |
-
|
| 66 |
-
nn.Linear(128, 2)
|
| 67 |
-
)
|
| 68 |
|
| 69 |
def forward(self, x):
|
| 70 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 71 |
|
| 72 |
# ======================
|
| 73 |
# LOAD MODELS
|
|
@@ -79,60 +76,59 @@ print("Loading AD model...")
|
|
| 79 |
ad_model = EEG_CNN_AD().to(DEVICE)
|
| 80 |
ad_model.load_state_dict(torch.load(AD_PATH, map_location=DEVICE))
|
| 81 |
ad_model.eval()
|
| 82 |
-
print("AD loaded")
|
| 83 |
|
| 84 |
print("Loading PD model...")
|
| 85 |
-
pd_model =
|
| 86 |
pd_model.load_state_dict(torch.load(PD_PATH, map_location=DEVICE))
|
| 87 |
pd_model.eval()
|
| 88 |
-
print("PD loaded")
|
| 89 |
|
| 90 |
# ======================
|
| 91 |
# PREPROCESS
|
| 92 |
# ======================
|
| 93 |
def preprocess(features, mode):
|
| 94 |
-
x = torch.tensor(features, dtype=torch.float32)
|
| 95 |
-
|
| 96 |
-
|
| 97 |
-
|
| 98 |
-
|
| 99 |
-
|
| 100 |
-
|
| 101 |
-
return x
|
| 102 |
-
|
| 103 |
-
raise ValueError("unknown mode")
|
| 104 |
|
| 105 |
# ======================
|
| 106 |
-
# PREDICT
|
| 107 |
# ======================
|
| 108 |
def predict(model, x, classes):
|
| 109 |
with torch.no_grad():
|
| 110 |
out = model(x)
|
| 111 |
probs = torch.softmax(out, dim=1).cpu().numpy()[0]
|
| 112 |
-
|
| 113 |
-
|
| 114 |
-
|
| 115 |
-
|
| 116 |
-
|
| 117 |
-
"confidence": float(probs[pred]),
|
| 118 |
-
"probabilities": {
|
| 119 |
-
classes[i]: float(probs[i]) for i in range(len(classes))
|
| 120 |
}
|
| 121 |
-
}
|
| 122 |
|
| 123 |
# ======================
|
| 124 |
# ROUTES
|
| 125 |
# ======================
|
| 126 |
@app.get("/")
|
| 127 |
def home():
|
| 128 |
-
return {
|
|
|
|
|
|
|
|
|
|
|
|
|
| 129 |
|
| 130 |
@app.post("/predict/ad")
|
| 131 |
def predict_ad(req: EEGRequest):
|
| 132 |
-
x = preprocess(req.features, "ad")
|
| 133 |
return predict(ad_model, x, AD_CLASSES)
|
| 134 |
|
| 135 |
@app.post("/predict/pd")
|
| 136 |
def predict_pd(req: EEGRequest):
|
| 137 |
-
x = preprocess(req.features, "pd")
|
| 138 |
return predict(pd_model, x, PD_CLASSES)
|
|
|
|
| 4 |
import torch.nn as nn
|
| 5 |
import numpy as np
|
| 6 |
|
| 7 |
+
app = FastAPI(title="NeuroHealth EEG API", version="RESET-2")
|
| 8 |
|
| 9 |
DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 10 |
|
|
|
|
| 15 |
PD_CLASSES = ["Parkinson", "Control"]
|
| 16 |
|
| 17 |
# ======================
|
| 18 |
+
# INPUT MODEL
|
| 19 |
# ======================
|
| 20 |
class EEGRequest(BaseModel):
|
| 21 |
features: list
|
| 22 |
|
| 23 |
# ======================
|
| 24 |
+
# AD MODEL - 1D CNN
|
| 25 |
# ======================
|
| 26 |
class EEG_CNN_AD(nn.Module):
|
| 27 |
def __init__(self):
|
| 28 |
super().__init__()
|
| 29 |
self.conv1 = nn.Conv1d(19, 32, 7, padding=3)
|
| 30 |
self.bn1 = nn.BatchNorm1d(32)
|
|
|
|
| 31 |
self.conv2 = nn.Conv1d(32, 64, 5, padding=2)
|
| 32 |
self.bn2 = nn.BatchNorm1d(64)
|
|
|
|
| 33 |
self.conv3 = nn.Conv1d(64, 128, 3, padding=1)
|
| 34 |
self.bn3 = nn.BatchNorm1d(128)
|
|
|
|
| 35 |
self.pool = nn.AdaptiveAvgPool1d(1)
|
| 36 |
self.fc = nn.Linear(128, 3)
|
| 37 |
|
| 38 |
def forward(self, x):
|
| 39 |
x = x.view(x.size(0), 19, 76)
|
|
|
|
| 40 |
x = torch.relu(self.bn1(self.conv1(x)))
|
| 41 |
x = torch.relu(self.bn2(self.conv2(x)))
|
| 42 |
x = torch.relu(self.bn3(self.conv3(x)))
|
|
|
|
| 43 |
x = self.pool(x).squeeze(-1)
|
| 44 |
return self.fc(x)
|
| 45 |
|
| 46 |
# ======================
|
| 47 |
+
# PD MODEL - 1D CNN (Fixed to match checkpoint)
|
| 48 |
# ======================
|
| 49 |
+
class EEG_CNN_PD(nn.Module):
|
| 50 |
def __init__(self):
|
| 51 |
super().__init__()
|
| 52 |
+
self.conv1 = nn.Conv1d(19, 32, 7, padding=3)
|
| 53 |
+
self.bn1 = nn.BatchNorm1d(32)
|
| 54 |
+
self.conv2 = nn.Conv1d(32, 64, 5, padding=2)
|
| 55 |
+
self.bn2 = nn.BatchNorm1d(64)
|
| 56 |
+
self.conv3 = nn.Conv1d(64, 128, 3, padding=1)
|
| 57 |
+
self.bn3 = nn.BatchNorm1d(128)
|
| 58 |
+
self.pool = nn.AdaptiveAvgPool1d(1)
|
| 59 |
+
self.fc = nn.Linear(128, 2)
|
|
|
|
|
|
|
|
|
|
| 60 |
|
| 61 |
def forward(self, x):
|
| 62 |
+
x = x.view(x.size(0), 19, 76)
|
| 63 |
+
x = torch.relu(self.bn1(self.conv1(x)))
|
| 64 |
+
x = torch.relu(self.bn2(self.conv2(x)))
|
| 65 |
+
x = torch.relu(self.bn3(self.conv3(x)))
|
| 66 |
+
x = self.pool(x).squeeze(-1)
|
| 67 |
+
return self.fc(x)
|
| 68 |
|
| 69 |
# ======================
|
| 70 |
# LOAD MODELS
|
|
|
|
| 76 |
ad_model = EEG_CNN_AD().to(DEVICE)
|
| 77 |
ad_model.load_state_dict(torch.load(AD_PATH, map_location=DEVICE))
|
| 78 |
ad_model.eval()
|
| 79 |
+
print("AD loaded successfully")
|
| 80 |
|
| 81 |
print("Loading PD model...")
|
| 82 |
+
pd_model = EEG_CNN_PD().to(DEVICE)
|
| 83 |
pd_model.load_state_dict(torch.load(PD_PATH, map_location=DEVICE))
|
| 84 |
pd_model.eval()
|
| 85 |
+
print("PD loaded successfully")
|
| 86 |
|
| 87 |
# ======================
|
| 88 |
# PREPROCESS
|
| 89 |
# ======================
|
| 90 |
def preprocess(features, mode):
|
| 91 |
+
x = torch.tensor(features, dtype=torch.float32).to(DEVICE)
|
| 92 |
+
if mode == "ad" or mode == "pd":
|
| 93 |
+
# Ensure shape is (batch, channels, time) -> (1, 19, 76)
|
| 94 |
+
if len(x.shape) == 1:
|
| 95 |
+
x = x.view(1, 19, 76)
|
| 96 |
+
elif len(x.shape) == 2:
|
| 97 |
+
x = x.unsqueeze(0)
|
| 98 |
+
return x
|
| 99 |
+
raise ValueError("Unknown mode")
|
|
|
|
| 100 |
|
| 101 |
# ======================
|
| 102 |
+
# PREDICT FUNCTION
|
| 103 |
# ======================
|
| 104 |
def predict(model, x, classes):
|
| 105 |
with torch.no_grad():
|
| 106 |
out = model(x)
|
| 107 |
probs = torch.softmax(out, dim=1).cpu().numpy()[0]
|
| 108 |
+
pred = int(np.argmax(probs))
|
| 109 |
+
return {
|
| 110 |
+
"prediction": classes[pred],
|
| 111 |
+
"confidence": float(probs[pred]),
|
| 112 |
+
"probabilities": {classes[i]: float(probs[i]) for i in range(len(classes))}
|
|
|
|
|
|
|
|
|
|
| 113 |
}
|
|
|
|
| 114 |
|
| 115 |
# ======================
|
| 116 |
# ROUTES
|
| 117 |
# ======================
|
| 118 |
@app.get("/")
|
| 119 |
def home():
|
| 120 |
+
return {
|
| 121 |
+
"status": "ready",
|
| 122 |
+
"message": "NeuroHealth EEG API is running (Fixed CNN architecture)",
|
| 123 |
+
"year": 2026
|
| 124 |
+
}
|
| 125 |
|
| 126 |
@app.post("/predict/ad")
|
| 127 |
def predict_ad(req: EEGRequest):
|
| 128 |
+
x = preprocess(req.features, "ad")
|
| 129 |
return predict(ad_model, x, AD_CLASSES)
|
| 130 |
|
| 131 |
@app.post("/predict/pd")
|
| 132 |
def predict_pd(req: EEGRequest):
|
| 133 |
+
x = preprocess(req.features, "pd")
|
| 134 |
return predict(pd_model, x, PD_CLASSES)
|