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b0e1209
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Parent(s):
f544d25
Switch to using sympytorch
Browse files- pysr/export_torch.py +25 -129
- setup.py +14 -3
pysr/export_torch.py
CHANGED
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@@ -14,151 +14,46 @@ def _reduce(fn):
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torch_initialized = False
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torch = None
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SingleSymPyModule = None
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def _initialize_torch():
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global torch_initialized
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global torch
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global
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global
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global SingleSymPyModule
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# Way to lazy load torch, only if this is called,
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# but still allow this module to be loaded in __init__
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if not torch_initialized:
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-
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_global_func_lookup = {
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sympy.Mul: _reduce(torch.mul),
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sympy.Add: _reduce(torch.add),
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sympy.div: torch.div,
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sympy.Abs: torch.abs,
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sympy.sign: torch.sign,
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# Note: May raise error for ints.
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sympy.ceiling: torch.ceil,
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sympy.floor: torch.floor,
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sympy.log: torch.log,
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sympy.exp: torch.exp,
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sympy.sqrt: torch.sqrt,
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sympy.cos: torch.cos,
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sympy.acos: torch.acos,
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sympy.sin: torch.sin,
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sympy.asin: torch.asin,
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sympy.tan: torch.tan,
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sympy.atan: torch.atan,
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sympy.atan2: torch.atan2,
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# Note: May give NaN for complex results.
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sympy.cosh: torch.cosh,
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sympy.acosh: torch.acosh,
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sympy.sinh: torch.sinh,
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sympy.asinh: torch.asinh,
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sympy.tanh: torch.tanh,
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sympy.atanh: torch.atanh,
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sympy.Pow: torch.pow,
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sympy.re: torch.real,
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sympy.im: torch.imag,
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sympy.arg: torch.angle,
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# Note: May raise error for ints and complexes
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sympy.erf: torch.erf,
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sympy.loggamma: torch.lgamma,
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sympy.Eq: torch.eq,
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sympy.Ne: torch.ne,
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sympy.StrictGreaterThan: torch.gt,
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sympy.StrictLessThan: torch.lt,
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sympy.LessThan: torch.le,
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sympy.GreaterThan: torch.ge,
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sympy.And: torch.logical_and,
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sympy.Or: torch.logical_or,
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sympy.Not: torch.logical_not,
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sympy.Max: torch.max,
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sympy.Min: torch.min,
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# Matrices
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sympy.MatAdd: torch.add,
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sympy.HadamardProduct: torch.mul,
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sympy.Trace: torch.trace,
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# Note: May raise error for integer matrices.
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sympy.Determinant: torch.det,
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}
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class
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"""SympyTorch code from https://github.com/patrick-kidger/sympytorch"""
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def __init__(self, *,
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super().__init__(**kwargs)
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self._sympy_func = expr.func
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if issubclass(expr.func, sympy.Float):
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self._value = torch.nn.Parameter(torch.tensor(float(expr)))
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self._torch_func = lambda: self._value
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self._args = ()
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elif issubclass(expr.func, sympy.UnevaluatedExpr):
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if len(expr.args) != 1 or not issubclass(expr.args[0].func, sympy.Float):
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raise ValueError("UnevaluatedExpr should only be used to wrap floats.")
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self.register_buffer('_value', torch.tensor(float(expr.args[0])))
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self._torch_func = lambda: self._value
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self._args = ()
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elif issubclass(expr.func, sympy.Integer):
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# Can get here if expr is one of the Integer special cases,
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# e.g. NegativeOne
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self._value = int(expr)
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self._torch_func = lambda: self._value
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self._args = ()
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elif issubclass(expr.func, sympy.Symbol):
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self._name = expr.name
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self._torch_func = lambda value: value
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self._args = ((lambda memodict: memodict[expr.name]),)
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else:
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self._torch_func = _func_lookup[expr.func]
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args = []
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for arg in expr.args:
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try:
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arg_ = _memodict[arg]
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except KeyError:
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arg_ = type(self)(expr=arg, _memodict=_memodict, _func_lookup=_func_lookup, **kwargs)
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_memodict[arg] = arg_
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args.append(arg_)
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self._args = torch.nn.ModuleList(args)
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def forward(self, memodict):
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args = []
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for arg in self._args:
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try:
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arg_ = memodict[arg]
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except KeyError:
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arg_ = arg(memodict)
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memodict[arg] = arg_
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args.append(arg_)
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return self._torch_func(*args)
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class SingleSymPyModule(torch.nn.Module):
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"""SympyTorch code from https://github.com/patrick-kidger/sympytorch"""
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def __init__(self, expression, symbols_in,
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selection=None, extra_funcs=None, **kwargs):
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super().__init__(**kwargs)
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_func_lookup = co.ChainMap(_global_func_lookup, extra_funcs)
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_memodict = {}
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self._node = _Node(expr=expression, _memodict=_memodict, _func_lookup=_func_lookup)
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self._expression_string = str(expression)
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self._selection = selection
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self.
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def __repr__(self):
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return f"{type(self).__name__}(expression={self._expression_string})"
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def forward(self, X):
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if self._selection is not None:
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X = X[:, self._selection]
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symbols = {symbol: X[:, i]
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for i, symbol in enumerate(self.
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return self.
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def sympy2torch(expression, symbols_in,
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@@ -168,10 +63,11 @@ def sympy2torch(expression, symbols_in,
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This function will assume the input to the module is a matrix X, where
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each column corresponds to each symbol you pass in `symbols_in`.
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"""
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global
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_initialize_torch()
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return
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torch_initialized = False
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torch = None
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sympytorch = None
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PySRTorchModule = None
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def _initialize_torch():
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global torch_initialized
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global torch
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global sympytorch
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global PySRTorchModule
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# Way to lazy load torch, only if this is called,
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# but still allow this module to be loaded in __init__
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if not torch_initialized:
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try:
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import torch
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import sympytorch
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except ImportError:
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raise ImportError("You need to pip install `torch` and `sympytorch` before exporting to pytorch.")
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torch_initialized = True
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class PySRTorchModule(torch.nn.Module):
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"""SympyTorch code from https://github.com/patrick-kidger/sympytorch"""
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def __init__(self, *, expression, symbols_in,
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selection=None, extra_funcs=None, **kwargs):
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super().__init__(**kwargs)
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self._module = sympytorch.SymPyModule(
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expressions=[expression],
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extra_funcs=extra_funcs)
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self._selection = selection
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self._symbols = symbols_in
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def __repr__(self):
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return f"{type(self).__name__}(expression={self._expression_string})"
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def forward(self, X):
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if self._selection is not None:
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X = X[:, self._selection]
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symbols = {str(symbol): X[:, i]
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for i, symbol in enumerate(self._symbols)}
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return self._module(**symbols)[..., 0]
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def sympy2torch(expression, symbols_in,
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This function will assume the input to the module is a matrix X, where
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each column corresponds to each symbol you pass in `symbols_in`.
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"""
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global PySRTorchModule
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_initialize_torch()
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return PySRTorchModule(expression=expression,
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symbols_in=symbols_in,
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selection=selection,
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extra_funcs=extra_torch_mappings)
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setup.py
CHANGED
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@@ -1,8 +1,19 @@
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import setuptools
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with open("README.md", "r") as fh:
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long_description = fh.read()
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setuptools.setup(
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name="pysr", # Replace with your own username
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version="0.6.0rc1",
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long_description=long_description,
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long_description_content_type="text/markdown",
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url="https://github.com/MilesCranmer/pysr",
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install_requires=[
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"numpy",
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"pandas",
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"sympy"
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],
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packages=setuptools.find_packages(),
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package_data={
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'pysr': ['../Project.toml', '../datasets/*']
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@@ -26,5 +37,5 @@ setuptools.setup(
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"Programming Language :: Python :: 3",
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"Operating System :: OS Independent",
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],
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python_requires='>=3.
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)
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import importlib.util
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import setuptools
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with open("README.md", "r") as fh:
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long_description = fh.read()
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extra_installs = []
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torch_installed = (importlib.util.find_spec('torch') is not None)
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install_sympytorch = torch_installed
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if install_sympytorch:
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extra_installs.append('sympytorch')
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print(extra_installs)
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setuptools.setup(
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name="pysr", # Replace with your own username
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version="0.6.0rc1",
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long_description=long_description,
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long_description_content_type="text/markdown",
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url="https://github.com/MilesCranmer/pysr",
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install_requires=([
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"numpy",
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"pandas",
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"sympy"
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] + extra_installs),
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packages=setuptools.find_packages(),
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package_data={
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'pysr': ['../Project.toml', '../datasets/*']
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"Programming Language :: Python :: 3",
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"Operating System :: OS Independent",
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],
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python_requires='>=3.7',
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)
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