Spaces:
Build error
Build error
msobral
commited on
Commit
·
e5bc67d
1
Parent(s):
cd94660
added recent code
Browse files- .ipynb_checkpoints/tests-checkpoint.ipynb +0 -0
- __pycache__/frontend.cpython-37.pyc +0 -0
- __pycache__/leds.cpython-37.pyc +0 -0
- capture.py +0 -0
- frontend.py +17 -5
- prog.py +75 -16
- readings.png +0 -0
- tests.ipynb +0 -0
.ipynb_checkpoints/tests-checkpoint.ipynb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
__pycache__/frontend.cpython-37.pyc
ADDED
|
Binary file (4.63 kB). View file
|
|
|
__pycache__/leds.cpython-37.pyc
ADDED
|
Binary file (2.73 kB). View file
|
|
|
capture.py
ADDED
|
File without changes
|
frontend.py
CHANGED
|
@@ -17,7 +17,7 @@ WREG = 0x40
|
|
| 17 |
|
| 18 |
class Reading:
|
| 19 |
def __init__(self, values: [int]):
|
| 20 |
-
|
| 21 |
assert values[0] & 0xF0 == 0xC0, "Invalid readback"
|
| 22 |
self.loff_statp = (values[0] & 0x0F) << 4 | (values[1] & 0xF0) >> 4
|
| 23 |
self.loff_statn = (values[1] & 0x0F) << 4 | (values[2] & 0xF0) >> 4
|
|
@@ -28,7 +28,7 @@ class Reading:
|
|
| 28 |
for i in range(8)
|
| 29 |
]
|
| 30 |
|
| 31 |
-
|
| 32 |
|
| 33 |
def channels(self):
|
| 34 |
return self._channels
|
|
@@ -49,13 +49,14 @@ class Frontend:
|
|
| 49 |
def __init__(self):
|
| 50 |
self.nrst = GPIO("/dev/gpiochip2", 9, "out")
|
| 51 |
self.pwdn = GPIO("/dev/gpiochip2", 12, "out")
|
| 52 |
-
self.
|
|
|
|
| 53 |
self.dev = SpiDev()
|
| 54 |
self.dev.open(0, 0)
|
| 55 |
-
self.dev.max_speed_hz =
|
| 56 |
self.dev.mode = 0b01
|
| 57 |
|
| 58 |
-
self.
|
| 59 |
self.powerup()
|
| 60 |
self.reset()
|
| 61 |
self.stop_continuous()
|
|
@@ -94,5 +95,16 @@ class Frontend:
|
|
| 94 |
values = self.dev.xfer([0x00] * 27)
|
| 95 |
return Reading(values)
|
| 96 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 97 |
def close(self):
|
| 98 |
self.dev.close()
|
|
|
|
| 17 |
|
| 18 |
class Reading:
|
| 19 |
def __init__(self, values: [int]):
|
| 20 |
+
# print(values)
|
| 21 |
assert values[0] & 0xF0 == 0xC0, "Invalid readback"
|
| 22 |
self.loff_statp = (values[0] & 0x0F) << 4 | (values[1] & 0xF0) >> 4
|
| 23 |
self.loff_statn = (values[1] & 0x0F) << 4 | (values[2] & 0xF0) >> 4
|
|
|
|
| 28 |
for i in range(8)
|
| 29 |
]
|
| 30 |
|
| 31 |
+
# print(self.loff_statp, self.loff_statn, self.gpios, self._channels)
|
| 32 |
|
| 33 |
def channels(self):
|
| 34 |
return self._channels
|
|
|
|
| 49 |
def __init__(self):
|
| 50 |
self.nrst = GPIO("/dev/gpiochip2", 9, "out")
|
| 51 |
self.pwdn = GPIO("/dev/gpiochip2", 12, "out")
|
| 52 |
+
self._start = GPIO("/dev/gpiochip3", 29, "out")
|
| 53 |
+
self.drdy = GPIO("/dev/gpiochip3", 28, "in")
|
| 54 |
self.dev = SpiDev()
|
| 55 |
self.dev.open(0, 0)
|
| 56 |
+
self.dev.max_speed_hz = 1000000
|
| 57 |
self.dev.mode = 0b01
|
| 58 |
|
| 59 |
+
self._start.write(False)
|
| 60 |
self.powerup()
|
| 61 |
self.reset()
|
| 62 |
self.stop_continuous()
|
|
|
|
| 95 |
values = self.dev.xfer([0x00] * 27)
|
| 96 |
return Reading(values)
|
| 97 |
|
| 98 |
+
def start(self):
|
| 99 |
+
self._start.write(True)
|
| 100 |
+
self.dev.xfer([START])
|
| 101 |
+
|
| 102 |
+
def stop(self):
|
| 103 |
+
self._start.write(False)
|
| 104 |
+
self.dev.xfer([STOP])
|
| 105 |
+
|
| 106 |
+
def is_ready(self):
|
| 107 |
+
return not self.drdy.read()
|
| 108 |
+
|
| 109 |
def close(self):
|
| 110 |
self.dev.close()
|
prog.py
CHANGED
|
@@ -1,34 +1,62 @@
|
|
| 1 |
from time import sleep
|
| 2 |
from playsound import playsound
|
| 3 |
import numpy as np
|
| 4 |
-
import matplotlib as plt
|
| 5 |
import os
|
|
|
|
| 6 |
|
| 7 |
from frontend import Frontend
|
| 8 |
from leds import LEDs, Color
|
| 9 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 10 |
FRONTEND_CONFIG = [
|
| 11 |
-
0x3E, #
|
| 12 |
0x95, # Datarate = 500 SPS
|
| 13 |
0xC0, # No tests
|
| 14 |
-
|
| 15 |
0x00, # No lead-off
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
|
| 22 |
-
|
| 23 |
0xE0, # Channel 8 disabled, 24 gain, no SRB2 & normal input
|
| 24 |
0x00, # No bias
|
| 25 |
0x00, # No bias
|
| 26 |
0xFF, # Lead-off on all positive pins?
|
| 27 |
0xFF, # Lead-off on all negative pins?
|
| 28 |
0x00, # Normal lead-off
|
| 29 |
-
0x00, # Lead-off positive status (RO)
|
| 30 |
-
|
| 31 |
-
0x00, # All GPIOs as output
|
| 32 |
0x20, # Disable SRB1
|
| 33 |
]
|
| 34 |
|
|
@@ -42,9 +70,21 @@ try:
|
|
| 42 |
leds.led2(Color.BLUE)
|
| 43 |
|
| 44 |
print("Configuring EEG Frontend")
|
| 45 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 46 |
print("EEG Frontend configured")
|
| 47 |
leds.led2(Color.PURPLE)
|
|
|
|
|
|
|
|
|
|
| 48 |
|
| 49 |
leds.aquisition(True)
|
| 50 |
sleep(0.5)
|
|
@@ -53,10 +93,29 @@ try:
|
|
| 53 |
leds.aquisition(True)
|
| 54 |
|
| 55 |
points = []
|
| 56 |
-
|
| 57 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 58 |
values = frontend.read()
|
| 59 |
print(values.channels())
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 60 |
|
| 61 |
finally:
|
| 62 |
frontend.close()
|
|
|
|
| 1 |
from time import sleep
|
| 2 |
from playsound import playsound
|
| 3 |
import numpy as np
|
| 4 |
+
import matplotlib.pyplot as plt
|
| 5 |
import os
|
| 6 |
+
from datetime import datetime, timedelta
|
| 7 |
|
| 8 |
from frontend import Frontend
|
| 9 |
from leds import LEDs, Color
|
| 10 |
|
| 11 |
+
DEFAULT_FRONTEND_CONFIG = [
|
| 12 |
+
0x3E, # ID (RO)
|
| 13 |
+
0x96, # Datarate = 250 SPS
|
| 14 |
+
0xC0, # No tests
|
| 15 |
+
0x60, # Power-down reference buffer, no bias
|
| 16 |
+
0x00, # No lead-off
|
| 17 |
+
0x61, # Channel 1 active, 24 gain, no SRB2 & input shorted
|
| 18 |
+
0x61, # Channel 2 active, 24 gain, no SRB2 & input shorted
|
| 19 |
+
0x61, # Channel 3 active, 24 gain, no SRB2 & input shorted
|
| 20 |
+
0x61, # Channel 4 active, 24 gain, no SRB2 & input shorted
|
| 21 |
+
0x61, # Channel 5 active, 24 gain, no SRB2 & input shorted
|
| 22 |
+
0x61, # Channel 6 active, 24 gain, no SRB2 & input shorted
|
| 23 |
+
0x61, # Channel 7 active, 24 gain, no SRB2 & input shorted
|
| 24 |
+
0x61, # Channel 8 active, 24 gain, no SRB2 & input shorted
|
| 25 |
+
0x00, # No bias
|
| 26 |
+
0x00, # No bias
|
| 27 |
+
0x00, # No lead-off
|
| 28 |
+
0x00, # No lead-off
|
| 29 |
+
0x00, # No lead-off flip
|
| 30 |
+
0x00, # Lead-off positive status (RO)
|
| 31 |
+
0x00, # Laed-off negative status (RO)
|
| 32 |
+
0x0F, # All GPIOs as inputs
|
| 33 |
+
0x00, # Disable SRB1
|
| 34 |
+
0x00, # Unused
|
| 35 |
+
0x00, # Single-shot, lead-off comparator disabled
|
| 36 |
+
]
|
| 37 |
+
|
| 38 |
FRONTEND_CONFIG = [
|
| 39 |
+
0x3E, # ID (RO)
|
| 40 |
0x95, # Datarate = 500 SPS
|
| 41 |
0xC0, # No tests
|
| 42 |
+
0xE0, # Power-down reference buffer, no bias
|
| 43 |
0x00, # No lead-off
|
| 44 |
+
0x68, # Channel 1 active, 24 gain, no SRB2 & normal input
|
| 45 |
+
0x68, # Channel 2 active, 24 gain, no SRB2 & normal input
|
| 46 |
+
0x68, # Channel 3 active, 24 gain, no SRB2 & normal input
|
| 47 |
+
0x68, # Channel 4 active, 24 gain, no SRB2 & normal input
|
| 48 |
+
0x68, # Channel 5 active, 24 gain, no SRB2 & normal input
|
| 49 |
+
0x68, # Channel 6 active, 24 gain, no SRB2 & normal input
|
| 50 |
+
0x68, # Channel 7 active, 24 gain, no SRB2 & normal input
|
| 51 |
0xE0, # Channel 8 disabled, 24 gain, no SRB2 & normal input
|
| 52 |
0x00, # No bias
|
| 53 |
0x00, # No bias
|
| 54 |
0xFF, # Lead-off on all positive pins?
|
| 55 |
0xFF, # Lead-off on all negative pins?
|
| 56 |
0x00, # Normal lead-off
|
| 57 |
+
0x00, # Lead-off positive status (RO)
|
| 58 |
+
0x00, # Lead-off negative status (RO)
|
| 59 |
+
0x00, # All GPIOs as output ?
|
| 60 |
0x20, # Disable SRB1
|
| 61 |
]
|
| 62 |
|
|
|
|
| 70 |
leds.led2(Color.BLUE)
|
| 71 |
|
| 72 |
print("Configuring EEG Frontend")
|
| 73 |
+
frontend.write_regs(0x00, FRONTEND_CONFIG)
|
| 74 |
+
#config = DEFAULT_FRONTEND_CONFIG[:]
|
| 75 |
+
#config[0x02] = 0xD0 # Activate test signals
|
| 76 |
+
#config[0x03] = 0xE0 # Power-up reference buffer
|
| 77 |
+
#for i in range(0x05, 0x0D):
|
| 78 |
+
# config[i] = 0x05 # Channel active, 1 gain, no SRB2 & Test signal
|
| 79 |
+
#frontend.write_regs(0x00, config)
|
| 80 |
+
data = frontend.read_regs(0x00, len(FRONTEND_CONFIG))
|
| 81 |
+
assert data == FRONTEND_CONFIG, f"Wrong config: {data} vs {FRONTEND_CONFIG}"
|
| 82 |
+
frontend.start()
|
| 83 |
print("EEG Frontend configured")
|
| 84 |
leds.led2(Color.PURPLE)
|
| 85 |
+
while not frontend.is_ready():
|
| 86 |
+
pass
|
| 87 |
+
print("Ready for data")
|
| 88 |
|
| 89 |
leds.aquisition(True)
|
| 90 |
sleep(0.5)
|
|
|
|
| 93 |
leds.aquisition(True)
|
| 94 |
|
| 95 |
points = []
|
| 96 |
+
START = datetime.now()
|
| 97 |
+
NUM_STEPS = 2000
|
| 98 |
+
#times = [timedelta(milliseconds=i) for i in range(NUM_STEPS)]
|
| 99 |
+
times = [i / 250 for i in range(NUM_STEPS)]
|
| 100 |
+
for x in range(NUM_STEPS):
|
| 101 |
+
while not frontend.is_ready():
|
| 102 |
+
pass
|
| 103 |
values = frontend.read()
|
| 104 |
print(values.channels())
|
| 105 |
+
points.append(values.channels())
|
| 106 |
+
while frontend.is_ready():
|
| 107 |
+
pass
|
| 108 |
+
leds.aquisition(False)
|
| 109 |
+
|
| 110 |
+
points = np.transpose(np.array(points))
|
| 111 |
+
fig, ax = plt.subplots()
|
| 112 |
+
for i in [0]:#range(8):
|
| 113 |
+
ax.plot(times, points[i] * 4.5 / 2**24, label='channel #' + str(i))
|
| 114 |
+
ax.set_xlabel('Time since start (s)')
|
| 115 |
+
ax.set_ylabel('Value')
|
| 116 |
+
ax.set_title('Test readings')
|
| 117 |
+
ax.legend()
|
| 118 |
+
plt.savefig('readings.png')
|
| 119 |
|
| 120 |
finally:
|
| 121 |
frontend.close()
|
readings.png
ADDED
|
tests.ipynb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|