Spaces:
Sleeping
Sleeping
MohitGupta41
commited on
Commit
·
bc5bc44
1
Parent(s):
adb9295
Initial Commit
Browse files- Src/api/fastapi_app.py +4 -286
Src/api/fastapi_app.py
CHANGED
|
@@ -1,289 +1,3 @@
|
|
| 1 |
-
# # from fastapi import FastAPI, Query
|
| 2 |
-
# # from pydantic import BaseModel
|
| 3 |
-
# # from datetime import datetime
|
| 4 |
-
# # from ..services.db import init_db, seed_data, get_connection
|
| 5 |
-
# # from ..services.patient_service import register_patient as save_patient
|
| 6 |
-
# # from ..services.medicine_service import check_medicine_availability
|
| 7 |
-
# # from ..rag.rag_pipeline import rag_query_multimodal
|
| 8 |
-
# # from ..services.doctor_assignment import assign_doctor_with_gemma
|
| 9 |
-
|
| 10 |
-
# # app = FastAPI()
|
| 11 |
-
|
| 12 |
-
# # # ----------------------------
|
| 13 |
-
# # # Startup: Init DB & Seed
|
| 14 |
-
# # # ----------------------------
|
| 15 |
-
# # @app.on_event("startup")
|
| 16 |
-
# # def startup_event():
|
| 17 |
-
# # init_db()
|
| 18 |
-
# # seed_data()
|
| 19 |
-
|
| 20 |
-
# # # ----------------------------
|
| 21 |
-
# # # 1. Chatbot Endpoint (RAG)
|
| 22 |
-
# # # ----------------------------
|
| 23 |
-
# # @app.get("/query")
|
| 24 |
-
# # def query_bot(q: str = Query(..., description="Medical question")):
|
| 25 |
-
# # answer, references = rag_query_multimodal(q, k=5)
|
| 26 |
-
# # return {"answer": answer, "references": references}
|
| 27 |
-
|
| 28 |
-
# # # ----------------------------
|
| 29 |
-
# # # 2. Register Patient + Assign Doctor
|
| 30 |
-
# # # ----------------------------
|
| 31 |
-
# # class PatientData(BaseModel):
|
| 32 |
-
# # name: str
|
| 33 |
-
# # age: int
|
| 34 |
-
# # reason: str
|
| 35 |
-
|
| 36 |
-
# # @app.post("/register_patient")
|
| 37 |
-
# # def register_patient_api(data: PatientData):
|
| 38 |
-
# # # Assign doctor using Gemma
|
| 39 |
-
# # doctor, reasoning = assign_doctor_with_gemma(data.reason)
|
| 40 |
-
|
| 41 |
-
# # if not doctor:
|
| 42 |
-
# # return {"message": "No suitable doctor found. Please try again later."}
|
| 43 |
-
|
| 44 |
-
# # # Save patient and doctor_id to DB
|
| 45 |
-
# # patient_id = save_patient(data.name, data.age, data.reason, doctor["id"])
|
| 46 |
-
|
| 47 |
-
# # # Convert doctor row to dict
|
| 48 |
-
# # doctor_dict = {key: doctor[key] for key in doctor.keys()} if doctor else None
|
| 49 |
-
|
| 50 |
-
# # return {
|
| 51 |
-
# # "patient_id": patient_id,
|
| 52 |
-
# # "assigned_doctor": doctor_dict,
|
| 53 |
-
# # "reasoning": reasoning
|
| 54 |
-
# # }
|
| 55 |
-
|
| 56 |
-
# # # ----------------------------
|
| 57 |
-
# # # 3. Check Registration & Confirm Appointment
|
| 58 |
-
# # # ----------------------------
|
| 59 |
-
# # class AppointmentData(BaseModel):
|
| 60 |
-
# # name: str # Patient name
|
| 61 |
-
|
| 62 |
-
# # @app.post("/check_registration_status")
|
| 63 |
-
# # def check_registration_status(data: AppointmentData):
|
| 64 |
-
# # conn = get_connection()
|
| 65 |
-
# # cur = conn.cursor()
|
| 66 |
-
|
| 67 |
-
# # # Get patient and assigned doctor
|
| 68 |
-
# # cur.execute("""
|
| 69 |
-
# # SELECT p.id AS patient_id, p.name AS patient_name, d.id AS doctor_id,
|
| 70 |
-
# # d.name AS doctor_name, d.specialization, d.available
|
| 71 |
-
# # FROM patients p
|
| 72 |
-
# # LEFT JOIN doctors d ON p.doctor_id = d.id
|
| 73 |
-
# # WHERE p.name = ?
|
| 74 |
-
# # """, (data.name,))
|
| 75 |
-
# # record = cur.fetchone()
|
| 76 |
-
|
| 77 |
-
# # if not record:
|
| 78 |
-
# # conn.close()
|
| 79 |
-
# # return {"message": "Patient not registered. Please register first."}
|
| 80 |
-
|
| 81 |
-
# # if not record["doctor_id"]:
|
| 82 |
-
# # conn.close()
|
| 83 |
-
# # return {"message": "No doctor assigned yet. Please register again."}
|
| 84 |
-
|
| 85 |
-
# # # Mark doctor as unavailable if available
|
| 86 |
-
# # if record["available"] == 1:
|
| 87 |
-
# # cur.execute(
|
| 88 |
-
# # "UPDATE doctors SET available=0, last_booked_at=? WHERE id=?",
|
| 89 |
-
# # (datetime.now().isoformat(), record["doctor_id"])
|
| 90 |
-
# # )
|
| 91 |
-
# # conn.commit()
|
| 92 |
-
|
| 93 |
-
# # conn.close()
|
| 94 |
-
|
| 95 |
-
# # return {
|
| 96 |
-
# # "message": f"Appointment confirmed with {record['doctor_name']} ({record['specialization']}) for {record['patient_name']}."
|
| 97 |
-
# # }
|
| 98 |
-
|
| 99 |
-
# # # ----------------------------
|
| 100 |
-
# # # 4. Medicine Availability
|
| 101 |
-
# # # ----------------------------
|
| 102 |
-
# # @app.get("/medicine_availability")
|
| 103 |
-
# # def medicine_availability_api(name: str = Query(..., description="Medicine name")):
|
| 104 |
-
# # result = check_medicine_availability(name)
|
| 105 |
-
# # return {"message": result}
|
| 106 |
-
|
| 107 |
-
|
| 108 |
-
|
| 109 |
-
|
| 110 |
-
|
| 111 |
-
|
| 112 |
-
|
| 113 |
-
|
| 114 |
-
|
| 115 |
-
|
| 116 |
-
# # Src/api/fastapi_app.py
|
| 117 |
-
|
| 118 |
-
# from fastapi import FastAPI, Query, Header, HTTPException
|
| 119 |
-
|
| 120 |
-
# from pydantic import BaseModel
|
| 121 |
-
# from datetime import datetime
|
| 122 |
-
|
| 123 |
-
# # DB and services
|
| 124 |
-
# from ..services.db import init_db, seed_data, get_connection
|
| 125 |
-
# from ..services.patient_service import register_patient as save_patient, get_patient_full_case
|
| 126 |
-
# from ..services.medicine_service import check_medicine_availability
|
| 127 |
-
# from ..services.doctor_assignment import assign_doctor_with_gemma
|
| 128 |
-
# from ..services.summarizer import summarize_patient_case
|
| 129 |
-
# # RAG pipeline
|
| 130 |
-
# from ..rag.rag_pipeline import rag_query_multimodal
|
| 131 |
-
|
| 132 |
-
# # Agent system
|
| 133 |
-
# from ..agent.orchestrator import orchestrate_query
|
| 134 |
-
# from ..agent.agent_executor import get_agent_executor
|
| 135 |
-
|
| 136 |
-
# # Initialize FastAPI app
|
| 137 |
-
# app = FastAPI()
|
| 138 |
-
|
| 139 |
-
# # ----------------------------
|
| 140 |
-
# # Startup: Init DB & Seed
|
| 141 |
-
# # ----------------------------
|
| 142 |
-
# @app.on_event("startup")
|
| 143 |
-
# def startup_event():
|
| 144 |
-
# init_db()
|
| 145 |
-
# seed_data()
|
| 146 |
-
|
| 147 |
-
# # ----------------------------
|
| 148 |
-
# # 1. Medical RAG Chatbot
|
| 149 |
-
# # ----------------------------
|
| 150 |
-
# @app.get("/query")
|
| 151 |
-
# def query_bot(q: str = Query(..., description="Medical question"), authorization: str = Header(...)):
|
| 152 |
-
# """
|
| 153 |
-
# Query the medical knowledge base (PDF + captions) using RAG.
|
| 154 |
-
# """
|
| 155 |
-
# hf_token = authorization.replace("Bearer ", "")
|
| 156 |
-
# answer, references = rag_query_multimodal(q, k=10, hf_token=hf_token)
|
| 157 |
-
# return {"answer": answer, "references": references}
|
| 158 |
-
|
| 159 |
-
# # ----------------------------
|
| 160 |
-
# # 2. Register Patient + Assign Doctor
|
| 161 |
-
# # ----------------------------
|
| 162 |
-
# class PatientData(BaseModel):
|
| 163 |
-
# name: str
|
| 164 |
-
# age: int
|
| 165 |
-
# reason: str
|
| 166 |
-
|
| 167 |
-
# @app.post("/register_patient")
|
| 168 |
-
# def register_patient_api(data: PatientData, authorization: str = Header(...)):
|
| 169 |
-
# """
|
| 170 |
-
# Register patient and assign doctor using Gemma LLM.
|
| 171 |
-
# """
|
| 172 |
-
# # Assign doctor via LLM
|
| 173 |
-
# hf_token = authorization.replace("Bearer ", "")
|
| 174 |
-
# doctor, reasoning = assign_doctor_with_gemma(data.reason, hf_token=hf_token)
|
| 175 |
-
|
| 176 |
-
# if not doctor:
|
| 177 |
-
# return {"message": "No suitable doctor found. Please try again later."}
|
| 178 |
-
|
| 179 |
-
# # Save patient record with doctor_id
|
| 180 |
-
# patient_record = save_patient({"name": data.name, "age": data.age, "reason": data.reason}, doctor["id"])
|
| 181 |
-
|
| 182 |
-
# return {
|
| 183 |
-
# "patient_id": patient_record["id"],
|
| 184 |
-
# "assigned_doctor": doctor,
|
| 185 |
-
# "reasoning": reasoning
|
| 186 |
-
# }
|
| 187 |
-
|
| 188 |
-
# # ----------------------------
|
| 189 |
-
# # 3. Check Registration & Confirm Appointment
|
| 190 |
-
# # ----------------------------
|
| 191 |
-
# class AppointmentData(BaseModel):
|
| 192 |
-
# name: str # Patient name
|
| 193 |
-
|
| 194 |
-
# @app.post("/check_registration_status")
|
| 195 |
-
# def check_registration_status(data: AppointmentData):
|
| 196 |
-
# """
|
| 197 |
-
# Confirm appointment for registered patient with already assigned doctor.
|
| 198 |
-
# """
|
| 199 |
-
# conn = get_connection()
|
| 200 |
-
# cur = conn.cursor()
|
| 201 |
-
|
| 202 |
-
# # Get patient + doctor details
|
| 203 |
-
# cur.execute("""
|
| 204 |
-
# SELECT p.id AS patient_id, p.name AS patient_name, d.id AS doctor_id,
|
| 205 |
-
# d.name AS doctor_name, d.specialization, d.available
|
| 206 |
-
# FROM patients p
|
| 207 |
-
# LEFT JOIN doctors d ON p.doctor_id = d.id
|
| 208 |
-
# WHERE p.name = ?
|
| 209 |
-
# """, (data.name,))
|
| 210 |
-
# record = cur.fetchone()
|
| 211 |
-
|
| 212 |
-
# if not record:
|
| 213 |
-
# conn.close()
|
| 214 |
-
# return {"message": "Patient not registered. Please register first."}
|
| 215 |
-
|
| 216 |
-
# if not record["doctor_id"]:
|
| 217 |
-
# conn.close()
|
| 218 |
-
# return {"message": "No doctor assigned yet. Please register again."}
|
| 219 |
-
|
| 220 |
-
# # Mark doctor unavailable if available
|
| 221 |
-
# if record["available"] == 1:
|
| 222 |
-
# cur.execute(
|
| 223 |
-
# "UPDATE doctors SET available=0, last_booked_at=? WHERE id=?",
|
| 224 |
-
# (datetime.now().isoformat(), record["doctor_id"])
|
| 225 |
-
# )
|
| 226 |
-
# conn.commit()
|
| 227 |
-
|
| 228 |
-
# conn.close()
|
| 229 |
-
|
| 230 |
-
# return {
|
| 231 |
-
# "message": f"Appointment confirmed with {record['doctor_name']} ({record['specialization']}) for {record['patient_name']}."
|
| 232 |
-
# }
|
| 233 |
-
|
| 234 |
-
# # ----------------------------
|
| 235 |
-
# # 4. Medicine Availability
|
| 236 |
-
# # ----------------------------
|
| 237 |
-
# @app.get("/medicine_availability")
|
| 238 |
-
# def medicine_availability_api(name: str = Query(..., description="Medicine name")):
|
| 239 |
-
# """
|
| 240 |
-
# Check if a medicine is available in the pharmacy stock.
|
| 241 |
-
# """
|
| 242 |
-
# result = check_medicine_availability(name)
|
| 243 |
-
# return {"message": result}
|
| 244 |
-
|
| 245 |
-
# # ----------------------------
|
| 246 |
-
# # 5. Summarize Patient case
|
| 247 |
-
# # ----------------------------
|
| 248 |
-
# @app.get("/summarize_case/{patient_id}")
|
| 249 |
-
# def summarize_case_api(patient_id: int):
|
| 250 |
-
# patient_data = get_patient_full_case(patient_id)
|
| 251 |
-
# if not patient_data:
|
| 252 |
-
# return {"message": "Patient not found"}
|
| 253 |
-
# summary = summarize_patient_case(patient_data)
|
| 254 |
-
# return {"summary": summary}
|
| 255 |
-
|
| 256 |
-
|
| 257 |
-
# # ----------------------------
|
| 258 |
-
# # 6. Agent Endpoint (Full LangChain Agent)
|
| 259 |
-
# # ----------------------------
|
| 260 |
-
# @app.get("/agent_query")
|
| 261 |
-
# def agent_query(q: str = Query(..., description="General hospital or medical query")):
|
| 262 |
-
# """
|
| 263 |
-
# Use full LangChain agent (tools + RAG) to process queries.
|
| 264 |
-
# """
|
| 265 |
-
# agent = get_agent_executor()
|
| 266 |
-
# response = agent.run(q)
|
| 267 |
-
# return {"response": response}
|
| 268 |
-
|
| 269 |
-
# # ----------------------------
|
| 270 |
-
# # 6. Simple Orchestrator Endpoint
|
| 271 |
-
# # ----------------------------
|
| 272 |
-
# @app.get("/orchestrator_query")
|
| 273 |
-
# def orchestrator_query(q: str = Query(..., description="Simple classified query")):
|
| 274 |
-
# """
|
| 275 |
-
# Use lightweight orchestrator to classify and execute tools or RAG.
|
| 276 |
-
# """
|
| 277 |
-
# result, references = orchestrate_query(q)
|
| 278 |
-
# return {"result": result, "references": references}
|
| 279 |
-
|
| 280 |
-
|
| 281 |
-
|
| 282 |
-
|
| 283 |
-
|
| 284 |
-
|
| 285 |
-
|
| 286 |
-
|
| 287 |
from fastapi import FastAPI, Query, Header, HTTPException
|
| 288 |
from pydantic import BaseModel
|
| 289 |
from datetime import datetime
|
|
@@ -312,6 +26,10 @@ def startup_event():
|
|
| 312 |
init_db()
|
| 313 |
seed_data()
|
| 314 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 315 |
# ----------------------------
|
| 316 |
# 1. Medical RAG Chatbot
|
| 317 |
# ----------------------------
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
from fastapi import FastAPI, Query, Header, HTTPException
|
| 2 |
from pydantic import BaseModel
|
| 3 |
from datetime import datetime
|
|
|
|
| 26 |
init_db()
|
| 27 |
seed_data()
|
| 28 |
|
| 29 |
+
@app.get("/")
|
| 30 |
+
def read_root():
|
| 31 |
+
return {"Hello": "World!"}
|
| 32 |
+
|
| 33 |
# ----------------------------
|
| 34 |
# 1. Medical RAG Chatbot
|
| 35 |
# ----------------------------
|