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eff04fc | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 | """Stimulus context loader for BrainRL prompts and rewards.
The Le Petit Prince dataset ships per-condition word annotation CSVs at
``<data_root>/data/annotation/<condition>_word_information.csv`` with one row
per spoken word and columns ``word, onset, offset, duration, logfreq, pos,
td, bu, lc``. This module slices those rows into compact "stimulus windows"
that the OpenEnv environment threads into each episode so:
* the LLM can see what the subject is hearing (top words + POS mix +
speech density) and start to learn a mapping from stimulus features to
brain parcels, and
* the reward function can apply a small, stimulus-conditioned bias to
parcel groups (auditory_temporal / inferior_frontal / association),
giving GRPO a learnable "space ↔ word" signal across episodes.
Design goals:
* Pure stdlib (csv + hashlib) so we don't pull in pandas at runtime.
* Lazy + cached: each CSV is parsed at most once per process.
* Robust: returns ``None`` instead of raising if the CSV is missing
so existing smoke tests still pass without the dataset attached.
"""
from __future__ import annotations
import csv
import os
from collections import Counter
from dataclasses import dataclass
from pathlib import Path
from typing import Iterable
PROJECT_ROOT = Path(__file__).resolve().parent
# Default annotation root: ds005345/data/annotation, sitting next to the repo.
_DEFAULT_ANNOTATION_DIR = PROJECT_ROOT.parent / "data" / "annotation"
# ``time`` columns in the word CSV are integer counts. Spot-checking the
# dataset (single_male: 1515 words spread over ~10 minutes of audio with
# offsets up to ~60000) confirms the unit is centiseconds (10 ms).
_TIME_UNIT_SECONDS = 0.01
# Universal POS tags that count as content words for stimulus features.
_CONTENT_POS = {"NOUN", "VERB", "ADJ", "ADV", "PROPN", "NUM"}
# Mapping from BrainRL condition codes to annotation file basenames.
# ``mixed_*`` sessions play single-male and single-female audio simultaneously
# and have only an acoustic CSV (no word-level annotation), so we fall back to
# the male annotation as the dominant track for those conditions.
_CONDITION_TO_FILE: dict[str, str] = {
"single_m": "single_male_word_information.csv",
"single_f": "single_female_word_information.csv",
"mixed_m": "single_male_word_information.csv",
"mixed_f": "single_female_word_information.csv",
}
@dataclass(frozen=True)
class WordRow:
"""Single annotated word from the stimulus CSV."""
word: str
onset: float
offset: float
duration: float
logfreq: float
pos: str
@property
def is_content(self) -> bool:
return self.pos.upper() in _CONTENT_POS
# ---------------------------------------------------------------------------
# Loading + caching
# ---------------------------------------------------------------------------
_CACHE: dict[str, list[WordRow]] = {}
def annotation_dir() -> Path:
"""Resolve the annotation directory from env var or default location."""
override = os.getenv("BRAINRL_STIMULUS_DIR")
if override:
return Path(override).expanduser()
data_dir = os.getenv("BRAINRL_DATA_DIR")
if data_dir:
candidate = Path(data_dir).expanduser() / "annotation"
if candidate.exists():
return candidate
config_dir = os.getenv("BRAINRL_CONFIG_DIR")
if config_dir:
candidate = Path(config_dir).expanduser().parent / "annotation"
if candidate.exists():
return candidate
return _DEFAULT_ANNOTATION_DIR
def _resolve_csv_path(condition: str, *, root: Path | None = None) -> Path | None:
file_name = _CONDITION_TO_FILE.get(condition.lower())
if not file_name:
return None
base = (root or annotation_dir()).expanduser()
candidate = base / file_name
return candidate if candidate.exists() else None
def load_word_rows(condition: str, *, root: Path | None = None) -> list[WordRow]:
"""Return cached word rows for ``condition`` (empty list if unavailable)."""
cache_key = f"{(root or annotation_dir()).resolve()}::{condition}"
if cache_key in _CACHE:
return _CACHE[cache_key]
csv_path = _resolve_csv_path(condition, root=root)
if csv_path is None:
_CACHE[cache_key] = []
return _CACHE[cache_key]
rows: list[WordRow] = []
with csv_path.open("r", encoding="utf-8", newline="") as handle:
reader = csv.DictReader(handle)
for raw in reader:
try:
onset = float(raw.get("onset", 0))
offset = float(raw.get("offset", 0))
duration = float(raw.get("duration", offset - onset))
logfreq = float(raw.get("logfreq", 0) or 0.0)
except (TypeError, ValueError):
continue
word = (raw.get("word") or "").strip()
pos = (raw.get("pos") or "").strip().upper()
if not word:
continue
rows.append(
WordRow(
word=word,
onset=onset,
offset=offset,
duration=duration,
logfreq=logfreq,
pos=pos,
)
)
_CACHE[cache_key] = rows
return rows
# ---------------------------------------------------------------------------
# Window summarization
# ---------------------------------------------------------------------------
def n_windows(condition: str, *, window_size: int = 30, root: Path | None = None) -> int:
"""Number of stimulus windows available for ``condition``."""
rows = load_word_rows(condition, root=root)
if not rows:
return 0
window_size = max(1, int(window_size))
return max(1, (len(rows) + window_size - 1) // window_size)
def _stable_window_index(*, condition: str, key: Iterable[object], n: int) -> int:
"""Deterministic mapping from any context tuple to a window index in [0, n).
Uses Python's ``hash`` with the same trick we use for episode_seed:
works well across runs of a single process. We do not rely on
cross-process determinism here because the loader is also called from
fresh ``BrainRegionSelectionEnvironment`` instances at episode time.
"""
if n <= 0:
return 0
seed_bits = abs(hash((condition, *tuple(key))))
return seed_bits % int(n)
def summarize_window(
condition: str | None,
*,
window_index: int | None = None,
window_size: int = 30,
top_words: int = 10,
deterministic_key: Iterable[object] | None = None,
root: Path | None = None,
) -> dict | None:
"""Build a compact stimulus-window dict for prompts and reward shaping.
Returns ``None`` when the condition has no annotation CSV (e.g. when
the dataset is not mounted). Callers should treat ``None`` as
"no stimulus context available" and fall back to the prior behaviour.
"""
if not condition:
return None
rows = load_word_rows(condition, root=root)
if not rows:
return None
window_size = max(1, int(window_size))
total_windows = max(1, (len(rows) + window_size - 1) // window_size)
if window_index is None:
if deterministic_key is None:
deterministic_key = (condition,)
window_index = _stable_window_index(
condition=condition, key=deterministic_key, n=total_windows
)
window_index = max(0, min(int(window_index), total_windows - 1))
start = window_index * window_size
end = min(start + window_size, len(rows))
window_rows = rows[start:end]
if not window_rows:
return None
pos_counter: Counter[str] = Counter()
content_count = 0
logfreqs: list[float] = []
durations: list[float] = []
for row in window_rows:
pos_counter[row.pos or "X"] += 1
if row.is_content:
content_count += 1
logfreqs.append(row.logfreq)
durations.append(row.duration)
start_time_s = window_rows[0].onset * _TIME_UNIT_SECONDS
end_time_s = window_rows[-1].offset * _TIME_UNIT_SECONDS
span_seconds = max(end_time_s - start_time_s, 1e-6)
speech_seconds = sum(durations) * _TIME_UNIT_SECONDS
density = float(min(1.0, max(0.0, speech_seconds / span_seconds)))
dominant_pos = pos_counter.most_common(1)[0][0] if pos_counter else "NA"
mean_logfreq = float(sum(logfreqs) / len(logfreqs)) if logfreqs else 0.0
mean_duration_s = float(
(sum(durations) / len(durations)) * _TIME_UNIT_SECONDS
) if durations else 0.0
# ``top_words`` is intentionally compact: just the first ``top_words``
# words in playback order with their POS so the prompt stays readable
# while still letting the LLM see actual stimulus content.
sample = [
{"w": row.word, "pos": row.pos or "X"}
for row in window_rows[: max(1, int(top_words))]
]
return {
"condition": condition,
"window_index": int(window_index),
"n_windows": int(total_windows),
"n_words": int(len(window_rows)),
"n_content_words": int(content_count),
"pos_counts": dict(pos_counter),
"dominant_pos": dominant_pos,
"mean_logfreq": float(round(mean_logfreq, 3)),
"mean_duration_s": float(round(mean_duration_s, 3)),
"start_time_s": float(round(start_time_s, 3)),
"end_time_s": float(round(end_time_s, 3)),
"speech_density": float(round(density, 3)),
"top_words": sample,
}
# ---------------------------------------------------------------------------
# Reward shaping helpers
# ---------------------------------------------------------------------------
def stimulus_bias_for_group(
redundancy_group: str,
features: dict | None,
) -> float:
"""Map a stimulus window to a per-parcel-group reward multiplier.
The intent is to give the RL policy a learnable signal: when the
current window is dominated by content nouns and high speech density
(lots of acoustic information), auditory_temporal parcels should pay
out a bit more; when it is heavy on grammatical/function words, the
inferior_frontal group is preferred; otherwise the broader
association group benefits. The multiplier is bounded to a small
range so it shapes choices without overwhelming the base reward.
"""
if not features:
return 1.0
n_words = max(1, int(features.get("n_words", 1)))
pos = features.get("pos_counts", {}) or {}
nouns = float(pos.get("NOUN", 0)) / n_words
verbs = float(pos.get("VERB", 0)) / n_words
function_share = (
float(pos.get("PART", 0))
+ float(pos.get("ADP", 0))
+ float(pos.get("DET", 0))
+ float(pos.get("PRON", 0))
+ float(pos.get("CCONJ", 0))
+ float(pos.get("SCONJ", 0))
) / n_words
density = float(features.get("speech_density", 0.5))
if redundancy_group == "auditory_temporal":
bias = 1.0 + 0.25 * density + 0.10 * nouns
elif redundancy_group == "inferior_frontal":
bias = 1.0 + 0.20 * function_share + 0.10 * verbs
elif redundancy_group == "association":
bias = 1.0 + 0.10 * (nouns + verbs)
else:
bias = 1.0
return float(max(0.7, min(1.4, bias)))
def compact_for_prompt(features: dict | None) -> dict | None:
"""Trim a window summary to the fields safe to paste into the prompt."""
if not features:
return None
return {
"condition": features.get("condition"),
"window": (
f"{int(features.get('window_index', 0)) + 1}/"
f"{int(features.get('n_windows', 1))}"
),
"n_words": int(features.get("n_words", 0)),
"dominant_pos": features.get("dominant_pos"),
"pos_mix": features.get("pos_counts", {}),
"mean_logfreq": features.get("mean_logfreq"),
"speech_density": features.get("speech_density"),
"duration_s": float(round(
float(features.get("end_time_s", 0.0))
- float(features.get("start_time_s", 0.0)),
3,
)),
"top_words": features.get("top_words", []),
}
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