app.py

import os
import streamlit as st
from PIL import Image
import pandas as pd
from datetime import datetime
import requests
from geopy.geocoders import Nominatim
import folium
from streamlit_folium import st_folium
import cv2
import numpy as np
from huggingface_hub import snapshot_download
from transformers import (
    AutoFeatureExtractor,
    AutoModelForImageClassification,
    ConvNextConfig,
    pipeline,
)

st.set_page_config(page_title="Skin Cancer Dashboard", layout="wide")

# --- Configuration ---
# Ensure you have set your Hugging Face token as an environment variable:
#export HF_TOKEN="YOUR_TOKEN_HERE"
MODEL_NAME = "Anwarkh1/Skin_Cancer-Image_Classification"
LLM_NAME = "google/flan-t5-xl"
HF_TOKEN = os.environ.get("HF_TOKEN")
DATA_DIR = "data/harvard_dataset"  # Path where you download and unpack the Harvard Dataverse dataset
DIARY_CSV = "diary.csv"

# Initialize session state defaults
if 'initialized' not in st.session_state:
    st.session_state['label'] = None
    st.session_state['score'] = None
    st.session_state['mole_id'] = ''
    st.session_state['geo_location'] = ''
    st.session_state['chat_history'] = []
    st.session_state['initialized'] = True

# Initialize geolocator for free geocoding
geolocator = Nominatim(user_agent="skin-dashboard", timeout = 10)


@st.cache_resource
def load_image_model(token: str):
    return pipeline(
        "image-classification",
        feature_extractor=AutoFeatureExtractor.from_pretrained(
            MODEL_NAME,
            #subfolder="Skin_Cancer-Image_Classification",
            use_auth_token=token
        ),
        model=AutoModelForImageClassification.from_pretrained(
            MODEL_NAME,
            #subfolder="Skin_Cancer-Image_Classification",
            use_auth_token=token
        ),
        device=0  # or -1 for CPU
    )



@st.cache_resource
def load_llm(token: str):
    return pipeline(
        "text2text-generation",
        model=LLM_NAME,
        device_map="auto",    # or device=0 for single GPU / -1 for CPU
        max_length=10000,
        num_beams=5,
        no_repeat_ngram_size=2,
        early_stopping=True,

    )
classifier = load_image_model(HF_TOKEN) if HF_TOKEN else None
explainer = load_llm(HF_TOKEN) if HF_TOKEN else None

# --- Diary Init ----

if not os.path.exists(DIARY_CSV):
    pd.DataFrame(
        columns=["timestamp", "image_path", "mole_id", "geo_location", "label", "score",
                 "body_location", "prior_consultation", "pain", "itch"]
    ).to_csv(DIARY_CSV, index=False)

# --- Save entry helper

def save_entry(img_path: str, mole_id: str, geo_location: str,
               label: str, score: float,
               body_location: str, prior_consult: str, pain: str, itch: str):
    df = pd.read_csv(DIARY_CSV)
    entry = {
        "timestamp": datetime.now().isoformat(),
        "image_path": img_path,
        "mole_id": mole_id,
        "geo_location": geo_location,
        "label": label,
        "score": float(score),
        "body_location": body_location,
        "prior_consultation": prior_consult,
        "pain": pain,
        "itch": itch
    }
    df.loc[len(df)] = entry
    df.to_csv(DIARY_CSV, index=False)

# --- Preprocessing Functions ---
def remove_hair(img: np.ndarray) -> np.ndarray:
    gray = cv2.cvtColor(img, cv2.COLOR_RGB2GRAY)
    kernel = cv2.getStructuringElement(cv2.MORPH_RECT, (17, 17))
    blackhat = cv2.morphologyEx(gray, cv2.MORPH_BLACKHAT, kernel)
    _, mask = cv2.threshold(blackhat, 10, 255, cv2.THRESH_BINARY)
    return cv2.inpaint(img, mask, 1, cv2.INPAINT_TELEA)


def preprocess(img: Image.Image, size: int = 224) -> Image.Image:
    arr = np.array(img)
    bgr = cv2.cvtColor(arr, cv2.COLOR_RGB2BGR)
    bgr = remove_hair(bgr)
    bgr = cv2.bilateralFilter(bgr, d=9, sigmaColor=75, sigmaSpace=75)
    lab = cv2.cvtColor(bgr, cv2.COLOR_BGR2LAB)
    l, a, b = cv2.split(lab)
    clahe = cv2.createCLAHE(clipLimit=2.0, tileGridSize=(8,8))
    cl = clahe.apply(l)
    merged = cv2.merge((cl, a, b))
    bgr = cv2.cvtColor(merged, cv2.COLOR_LAB2BGR)
    h, w = bgr.shape[:2]
    scale = size / max(h, w)
    nh, nw = int(h*scale), int(w*scale)
    resized = cv2.resize(bgr, (nw, nh), interpolation=cv2.INTER_AREA)
    canvas = np.full((size, size, 3), 128, dtype=np.uint8)
    top, left = (size-nh)//2, (size-nw)//2
    canvas[top:top+nh, left:left+nw] = resized
    rgb = cv2.cvtColor(canvas, cv2.COLOR_BGR2RGB)
    return Image.fromarray(rgb)

# -----Streamlit layout ---- 
st.title("🩺 Skin Cancer Recognition Dashboard")
menu = ["Scan Mole","Chat","Diary", "Dataset Explorer"]
choice = st.sidebar.selectbox("Navigation", menu)

# --- Initialize Scan a Mole ---
if choice == "Scan Mole":
    st.header("🔍 Scan a Mole")
    if not classifier:
        st.error("Missing HF_TOKEN.")
        st.stop()

    upload = st.file_uploader("Upload a skin image", type=["jpg","jpeg","png"])
    if not upload:
        st.info("Please upload an image to begin.")
        st.stop()

    raw = Image.open(upload).convert("RGB")
    st.image(raw, caption="Original", use_container_width=True)

    proc = preprocess(raw)
    st.image(proc, caption="Preprocessed", use_container_width=True)

    mole = st.text_input("Mole ID")
    city = st.text_input("Geographic location")
    body = st.selectbox("Body location", ["Face","Scalp","Neck","Chest","Back","Arm","Hand","Leg","Foot","Other"])
    prior = st.radio("Prior consult?", ["Yes","No"], horizontal=True)
    pain = st.radio("Pain?", ["Yes","No"], horizontal=True)
    itch = st.radio("Itch?", ["Yes","No"], horizontal=True)

    if st.button("Classify"):
        if not mole or not city:
            st.error("Enter ID and location.")
        else:
            with st.spinner("Analyzing..."):
                out = classifier(proc)
            lbl, scr = out[0]["label"], out[0]["score"]
            save_dir = os.path.join("scans", f"{mole}_{datetime.now().timestamp()}.png")
            os.makedirs(os.path.dirname(save_dir), exist_ok=True)
            raw.save(save_dir)
            save_entry(save_dir, mole, city, lbl, scr, body, prior, pain, itch)
            st.session_state.update({
                'label': lbl,
                'score': scr,
                'mole_id': mole,
                'geo_location': city
            })

    if st.session_state['label']:
        st.success(f"Prediction: {st.session_state['label']} (score {st.session_state['score']:.2f})")
        if explainer:
            with st.spinner("Explaining..."):
                text = explainer(f"Explain {st.session_state['label']} and recommendation.")[0]['generated_text']
            st.markdown("### Explanation"); st.write(text)

        loc = geolocator.geocode(st.session_state['geo_location'])
        if loc:
            m = folium.Map([loc.latitude, loc.longitude], zoom_start=12)
            folium.Marker([loc.latitude, loc.longitude], "You").add_to(m)
            resp = requests.post(
                "https://overpass-api.de/api/interpreter",
                data={"data": f"[out:json];node(around:5000,{loc.latitude},{loc.longitude})[~\"^(amenity|healthcare)$\"~\"clinic|doctors\"];out;"}
            )
            for el in resp.json().get('elements', []):
                tags = el.get('tags', {});
                lat = el.get('lat') or el['center']['lat']; lon = el.get('lon') or el['center']['lon']
                folium.Marker([lat, lon], tags.get('name','Clinic')).add_to(m)
            st.markdown("### Nearby Clinics"); st_folium(m, width=700)

# --- Chat Tab ---
elif choice == "Chat":
    st.header("💬 Follow-Up Chat")
    if not st.session_state['label']:
        st.info("Please perform a scan first in the 'Scan Mole' tab.")
    else:
        lbl = st.session_state['label']
        scr = st.session_state['score']
        mid = st.session_state['mole_id']
        gloc = st.session_state['geo_location']
        st.markdown(f"**Context:** prediction for **{mid}** at **{gloc}** is **{lbl}** (confidence {scr:.2f}).")

        # New user message comes first for immediate loop
        user_q = st.chat_input("Ask a follow-up question:", key="chat_input")
        if user_q and explainer:
            st.session_state['chat_history'].append({'role':'user','content':user_q})
            system_p = "You are a dermatology assistant. Provide concise medical advice without clarifying questions."
            tpl = (
                f"{system_p}\nContext: prediction is {lbl} with confidence {scr:.2f}.\n"
                f"User: {user_q}\nAssistant:"
            )
            with st.spinner("Generating response..."):
                reply = explainer(tpl)[0]['generated_text']
            st.session_state['chat_history'].append({'role':'assistant','content':reply})

        # Display the updated chat history
        for msg in st.session_state['chat_history']:
            prefix = 'You' if msg['role']=='user' else 'AI'
            st.markdown(f"**{prefix}:** {msg['content']}")


# --- Diary Page ---
elif choice == "Diary":
    st.header("📖 Skin Cancer Diary")
    df = pd.read_csv(DIARY_CSV)
    df['timestamp'] = pd.to_datetime(df['timestamp'])
    if df.empty:
        st.info("No diary entries yet.")
    else:
        mole_ids = sorted(df['mole_id'].unique())
        sel = st.selectbox("Select Mole to View", ['All'] + mole_ids, key="diary_sel")
        if sel == 'All':
            # Display moles in columns (max 3 per row)
            chunks = [mole_ids[i:i+3] for i in range(0, len(mole_ids), 3)]
            for group in chunks:
                cols = st.columns(len(group))
                for col, mid in zip(cols, group):
                    with col:
                        st.subheader(mid)
                        entries = df[df['mole_id'] == mid].sort_values('timestamp')
                        # Show image timeline
                        for _, row in entries.iterrows():
                            if os.path.exists(row['image_path']):
                                st.image(
                                    row['image_path'],
                                    width=150,
                                    caption=f"{row['timestamp'].strftime('%Y-%m-%d')} — {row['score']:.2f}"
                                )
                        st.write(f"Total scans: {len(entries)}")
        else:
            # Detailed view for a single mole
            entries = df[df['mole_id'] == sel].sort_values('timestamp')
            if entries.empty:
                st.warning(f"No entries for {sel}.")
            else:
                # Score over time
                st.line_chart(entries.set_index('timestamp')['score'])
                st.markdown("#### Image Timeline")
                for _, row in entries.iterrows():
                    if os.path.exists(row['image_path']):
                        st.image(
                            row['image_path'],
                            width=200,
                            caption=(
                                f"{row['timestamp'].strftime('%Y-%m-%d %H:%M')} — "
                                f"Score: {row['score']:.2f}"
                            )
                        )
                st.markdown("#### Details")
                st.dataframe(
                    entries[
                        ['timestamp','geo_location','label','score',
                         'body_location','prior_consultation','pain','itch']
                    ]
                    .rename(columns={
                        'timestamp':'Time','geo_location':'Location',
                        'label':'Diagnosis','score':'Confidence',
                        'body_location':'Body Part','prior_consultation':'Prior Consult',
                        'pain':'Pain','itch':'Itch'
                    })
                    .sort_values('Time', ascending=False)
                )

else:
    st.header("📂 Dataset Explorer")
    st.write("Preview images from the Harvard Skin Cancer Dataset")

    # pick up to 15 image files
    image_files = [
    f for f in os.listdir(DATA_DIR)
    if os.path.isfile(os.path.join(DATA_DIR, f))
    and f.lower().endswith((".jpg", ".jpeg", ".png"))
    ][:15]

    for i in range(0, len(image_files), 3):
        cols = st.columns(3)
        for col, fn in zip(cols, image_files[i : i + 3]):
            path = os.path.join(DATA_DIR, fn)
            img = Image.open(path)
            col.image(img, use_container_width=True)
            col.caption(fn)

st.sidebar.markdown("---")
st.sidebar.write("Dataset powered by Harvard Dataverse [DBW86T]")
st.sidebar.write(f"Model: {MODEL_NAME}")
st.sidebar.write(f"LLM: {LLM_NAME}")

if __name__ == '__main__':
    st.write()