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Update app.py
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app.py
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@@ -1,14 +1,10 @@
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import gradio as gr
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import torch
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import torch.nn as nn
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import torchvision.transforms as transforms
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from efficientnet_pytorch import EfficientNet
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from PIL import Image
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from fpdf import FPDF
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import os
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from datetime import datetime
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# Define HardSwish activation function
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class HardSwish(nn.Module):
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def __init__(self):
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super(HardSwish, self).__init__()
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@@ -16,7 +12,7 @@ class HardSwish(nn.Module):
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def forward(self, x):
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return x * (torch.clamp(x + 3, 0, 6) / 6)
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# Define
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class CustomEfficientNet(nn.Module):
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def __init__(self, num_classes):
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super(CustomEfficientNet, self).__init__()
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@@ -40,7 +36,7 @@ class_names = ['No Finding', 'Enlarged Cardiomediastinum', 'Cardiomegaly', 'Lung
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# Device configuration
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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# Load model
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model = CustomEfficientNet(num_classes=14)
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checkpoint = torch.load('Final_global_model.pth.tar', map_location=device)
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if 'state_dict' in checkpoint:
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@@ -50,97 +46,47 @@ else:
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model = model.to(device)
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model.eval()
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# Transformations
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transform = transforms.Compose([
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transforms.Resize((300, 300)),
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transforms.ToTensor(),
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transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
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])
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# Prediction
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def predict(image
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if image is None:
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raise ValueError("❌ Error: No image uploaded.")
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if not patient_name.strip():
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raise ValueError("❌ Error: Patient name is required.")
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if not xray_date.strip():
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raise ValueError("❌ Error: X-ray date is required.")
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# Ensure
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if not isinstance(image, Image.Image):
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image = Image.fromarray(image)
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if image.mode != 'RGB':
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image = image.convert('RGB')
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# Preprocess
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img = transform(image).unsqueeze(0).to(device)
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#
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with torch.no_grad():
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outputs = model(img)
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probs = torch.sigmoid(outputs).cpu().numpy()[0]
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results = {class_names[i]: float(probs[i]) for i in range(len(class_names))}
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sorted_results = dict(sorted(results.items(), key=lambda item: item[1], reverse=True))
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top5 = list(sorted_results.items())[:5]
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top_label, top_prob = top5[0]
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if top_label == "No Finding" and top_prob > 0.5:
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comment = "✅ No major abnormal findings detected."
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elif top_prob > 0.5:
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comment = f"⚠️ High likelihood of {top_label}."
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else:
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comment = f"🔎 Possible {top_label}, but confidence is low."
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# Generate PDF report
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pdf = FPDF()
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pdf.add_page()
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pdf.set_font("Arial", 'B', 16)
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pdf.cell(0, 10, "Chest X-ray Disease Report", ln=True, align='C')
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pdf.ln(10)
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# Patient Details
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pdf.set_font("Arial", '', 12)
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pdf.cell(0, 10, f"Patient Name: {patient_name}", ln=True)
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pdf.cell(0, 10, f"X-ray Date: {xray_date}", ln=True)
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pdf.cell(0, 10, f"Report Date: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}", ln=True)
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pdf.ln(10)
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# Top 5 Predictions
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pdf.set_font("Arial", 'B', 14)
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pdf.cell(0, 10, "Top 5 Predictions:", ln=True)
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pdf.set_font("Arial", '', 12)
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for disease, prob in top5:
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pdf.cell(0, 10, f"{disease}: {prob*100:.2f}%", ln=True)
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pdf.ln(10)
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# Comment Section
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pdf.set_font("Arial", 'B', 14)
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pdf.cell(0, 10, "Doctor's Comment:", ln=True)
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pdf.set_font("Arial", '', 12)
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pdf.multi_cell(0, 10, comment)
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# Save PDF
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output_pdf_path = "chest_xray_report.pdf"
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pdf.output(output_pdf_path)
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return output_pdf_path
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# Gradio Interface
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interface = gr.Interface(
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fn=predict,
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inputs=
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],
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outputs=gr.File(label="Download PDF Report"),
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title="Chest X-ray Disease Classification with Report",
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description="Upload an X-ray, enter patient details, and download a detailed PDF report.",
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theme="default",
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allow_flagging="never"
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)
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import torch
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import torch.nn as nn
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import torchvision.transforms as transforms
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from efficientnet_pytorch import EfficientNet
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from PIL import Image
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# Define the HardSwish activation function
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class HardSwish(nn.Module):
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def __init__(self):
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super(HardSwish, self).__init__()
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def forward(self, x):
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return x * (torch.clamp(x + 3, 0, 6) / 6)
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# Define the model class
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class CustomEfficientNet(nn.Module):
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def __init__(self, num_classes):
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super(CustomEfficientNet, self).__init__()
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# Device configuration
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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# Load the model
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model = CustomEfficientNet(num_classes=14)
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checkpoint = torch.load('Final_global_model.pth.tar', map_location=device)
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if 'state_dict' in checkpoint:
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model = model.to(device)
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model.eval()
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# Transformations for input image
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transform = transforms.Compose([
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transforms.Resize((300, 300)),
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transforms.ToTensor(),
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transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
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])
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# Prediction function
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def predict(image):
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if image is None:
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raise ValueError("❌ Error: No image uploaded.")
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# Ensure image is in RGB mode
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if not isinstance(image, Image.Image):
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image = Image.fromarray(image)
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if image.mode != 'RGB':
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image = image.convert('RGB')
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# Preprocess the image
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img = transform(image).unsqueeze(0).to(device)
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# Prediction
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with torch.no_grad():
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outputs = model(img)
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probs = torch.sigmoid(outputs).cpu().numpy()[0]
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# Prepare results
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results = {class_names[i]: float(probs[i]) for i in range(len(class_names))}
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sorted_results = dict(sorted(results.items(), key=lambda item: item[1], reverse=True))
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top5 = {k: v for k, v in list(sorted_results.items())[:5]}
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return top5
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# Gradio Interface
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interface = gr.Interface(
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fn=predict,
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inputs=gr.Image(type="pil"),
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outputs=gr.Label(num_top_classes=5),
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title="Chest X-ray Disease Classification",
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description="Upload a chest X-ray image (JPG, PNG, BMP, TIFF, etc.) to get disease predictions.\n\nTop 5 diseases are shown with their probability.",
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theme="default",
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allow_flagging="never"
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)
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