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Update app.py
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app.py
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@@ -4,8 +4,11 @@ import torch.nn as nn
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import torchvision.transforms as transforms
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from efficientnet_pytorch import EfficientNet
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from PIL import Image
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# Define
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class HardSwish(nn.Module):
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def __init__(self):
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super(HardSwish, self).__init__()
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@@ -13,7 +16,7 @@ class HardSwish(nn.Module):
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def forward(self, x):
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return x * (torch.clamp(x + 3, 0, 6) / 6)
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#
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class CustomEfficientNet(nn.Module):
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def __init__(self, num_classes):
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super(CustomEfficientNet, self).__init__()
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@@ -34,7 +37,7 @@ class_names = ['No Finding', 'Enlarged Cardiomediastinum', 'Cardiomegaly', 'Lung
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'Lung Lesion', 'Edema', 'Consolidation', 'Pneumonia', 'Atelectasis', 'Pneumothorax',
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'Pleural Effusion', 'Pleural Other', 'Fracture', 'Support Devices']
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# Device
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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# Load the model
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@@ -47,50 +50,118 @@ else:
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model = model.to(device)
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model.eval()
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#
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transform = transforms.Compose([
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transforms.Resize((300, 300)),
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transforms.ToTensor(),
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transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
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])
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# Prediction
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def
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if image is None:
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raise ValueError("❌ Error: No image uploaded.")
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# Ensure image is in RGB mode
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if not isinstance(image, Image.Image):
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image = Image.fromarray(image)
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if image.mode != 'RGB':
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image = image.convert('RGB')
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# Preprocess
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img = transform(image).unsqueeze(0).to(device)
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#
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with torch.no_grad():
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outputs = model(img)
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probs = torch.sigmoid(outputs).cpu().numpy()[0]
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#
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results = {class_names[i]: float(probs[i]) for i in range(len(class_names))}
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sorted_results = dict(sorted(results.items(), key=lambda item: item[1], reverse=True))
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top5 =
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# Gradio Interface
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if __name__ == "__main__":
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-
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import torchvision.transforms as transforms
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from efficientnet_pytorch import EfficientNet
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from PIL import Image
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from fpdf import FPDF
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import os
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from datetime import datetime
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# Define HardSwish activation
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class HardSwish(nn.Module):
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def __init__(self):
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super(HardSwish, self).__init__()
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def forward(self, x):
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return x * (torch.clamp(x + 3, 0, 6) / 6)
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# Model class
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class CustomEfficientNet(nn.Module):
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def __init__(self, num_classes):
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super(CustomEfficientNet, self).__init__()
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'Lung Lesion', 'Edema', 'Consolidation', 'Pneumonia', 'Atelectasis', 'Pneumothorax',
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'Pleural Effusion', 'Pleural Other', 'Fracture', 'Support Devices']
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# Device config
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device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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# Load the model
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model = model.to(device)
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model.eval()
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# Transform
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transform = transforms.Compose([
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transforms.Resize((300, 300)),
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transforms.ToTensor(),
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transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
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])
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# Prediction and PDF generation
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def predict_and_generate_pdf(image, patient_name, xray_date):
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if image is None:
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raise ValueError("❌ Error: No image uploaded.")
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if not patient_name.strip():
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raise ValueError("❌ Error: Patient name is required.")
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if not xray_date:
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raise ValueError("❌ Error: X-ray date is required.")
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if not isinstance(image, Image.Image):
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image = Image.fromarray(image)
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if image.mode != 'RGB':
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image = image.convert('RGB')
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# Preprocess
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img = transform(image).unsqueeze(0).to(device)
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# Predict
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with torch.no_grad():
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outputs = model(img)
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probs = torch.sigmoid(outputs).cpu().numpy()[0]
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# Process results
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results = {class_names[i]: float(probs[i]) for i in range(len(class_names))}
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sorted_results = dict(sorted(results.items(), key=lambda item: item[1], reverse=True))
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top5 = list(sorted_results.items())[:5]
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# Comment Logic
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top_label, top_prob = top5[0]
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if top_label == "No Finding" and top_prob > 0.5:
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comment = "✅ No major abnormal findings detected."
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elif top_prob > 0.5:
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comment = f"⚠️ High likelihood of {top_label}."
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else:
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comment = f"🔎 Possibility of {top_label}, but low confidence."
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# Save thumbnail
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image_path = "xray_thumbnail.jpg"
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image_copy = image.copy()
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image_copy.thumbnail((100, 100))
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image_copy.save(image_path)
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# Create PDF
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pdf = FPDF()
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pdf.add_page()
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pdf.set_font("Arial", 'B', 18)
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pdf.cell(0, 10, "Chest X-ray Analysis Report", ln=True, align='C')
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pdf.ln(10)
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# Patient Details
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pdf.set_font("Arial", '', 12)
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pdf.cell(0, 10, f"Patient Name: {patient_name}", ln=True)
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pdf.cell(0, 10, f"X-ray Date: {xray_date}", ln=True)
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pdf.cell(0, 10, f"Report Generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}", ln=True)
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pdf.ln(10)
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# X-ray Image
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pdf.image(image_path, x=80, w=50)
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pdf.ln(10)
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# Top 5 Predictions
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pdf.set_font("Arial", 'B', 14)
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pdf.cell(0, 10, "Top 5 Predictions:", ln=True)
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pdf.set_font("Arial", '', 12)
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pdf.set_fill_color(230, 230, 230)
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for disease, prob in top5:
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pdf.cell(100, 10, disease, 1, 0, 'L', fill=True)
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pdf.cell(40, 10, f"{prob*100:.2f}%", 1, 1, 'C', fill=True)
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pdf.ln(10)
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# Comments
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pdf.set_font("Arial", 'B', 14)
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pdf.cell(0, 10, "Doctor's Comment:", ln=True)
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pdf.set_font("Arial", '', 12)
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pdf.set_fill_color(240, 248, 255)
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pdf.multi_cell(0, 10, comment, fill=True)
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# Save PDF
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output_pdf_path = "chest_xray_report.pdf"
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pdf.output(output_pdf_path)
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return output_pdf_path
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# Gradio Interface
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with gr.Blocks(theme="default") as demo:
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gr.Markdown("# 🩺 Chest X-ray Disease Classification App")
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gr.Markdown("Upload a chest X-ray, enter patient information, and generate a detailed PDF report.")
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with gr.Row():
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with gr.Column():
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image_input = gr.Image(type="pil", label="Upload Chest X-ray Image")
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name_input = gr.Textbox(label="Patient Name")
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date_input = gr.Date(label="Date of X-ray")
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submit_button = gr.Button("Analyze & Generate PDF Report")
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with gr.Column():
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file_output = gr.File(label="Download Generated Report (PDF)")
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submit_button.click(
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fn=predict_and_generate_pdf,
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inputs=[image_input, name_input, date_input],
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outputs=file_output
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)
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if __name__ == "__main__":
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demo.launch()
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