molecular_Designer_Env / inference.py
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"""
Inference Script Example
===================================
MANDATORY
- Before submitting, ensure the following variables are defined in your environment configuration:
API_BASE_URL The API endpoint for the LLM.
MODEL_NAME The model identifier to use for inference.
HF_TOKEN Your Hugging Face / API key.
LOCAL_IMAGE_NAME The name of the local image to use for the environment if you are using from_docker_image()
method
- Defaults are set only for API_BASE_URL and MODEL_NAME
(and should reflect your active inference setup):
API_BASE_URL = os.getenv("API_BASE_URL", "<your-active-endpoint>")
MODEL_NAME = os.getenv("MODEL_NAME", "<your-active-model>")
- The inference script must be named `inference.py` and placed in the root directory of the project
- Participants must use OpenAI Client for all LLM calls using above variables
STDOUT FORMAT
- The script must emit exactly three line types to stdout, in this order:
[START] task=<task_name> env=<benchmark> model=<model_name>
[STEP] step=<n> action=<action_str> reward=<0.00> done=<true|false> error=<msg|null>
[END] success=<true|false> steps=<n> score=<score> rewards=<r1,r2,...,rn>
Rules:
- One [START] line at episode begin.
- One [STEP] line per step, immediately after env.step() returns.
- One [END] line after env.close(), always emitted (even on exception).
- reward and rewards are formatted to 2 decimal places.
- done and success are lowercase booleans: true or false.
- error is the raw last_action_error string, or null if none.
- All fields on a single line with no newlines within a line.
- Each tasks should return score in [0, 1]
Example:
[START] task=click-test env=miniwob model=Qwen3-VL-30B
[STEP] step=1 action=click('123') reward=0.00 done=false error=null
[STEP] step=2 action=fill('456','text') reward=0.00 done=false error=null
[STEP] step=3 action=click('789') reward=1.00 done=true error=null
[END] success=true steps=3 score=1.00 rewards=0.00,0.00,1.00
"""
import asyncio
import os
import textwrap
from typing import List, Optional
from urllib.parse import urlparse
from dotenv import load_dotenv
from openai import OpenAI
load_dotenv() # Load environment variables from .env file
from molecular_Designer_Env.client import MolecularDesignerEnvEnv
from molecular_Designer_Env.models import MolecularDesignerEnvAction
IMAGE_NAME = os.getenv("IMAGE_NAME") # If you are using docker image
BASE_URL = os.getenv("BASE_URL") # If connecting to deployed server
API_KEY = os.getenv("HF_TOKEN") or os.getenv("API_KEY")
API_BASE_URL = os.getenv("API_BASE_URL") or "https://router.huggingface.co/v1"
MODEL_NAME = os.getenv("MODEL_NAME") or "Qwen/Qwen2.5-72B-Instruct"
TASK_NAME = os.getenv("TASK_NAME", "easy")
BENCHMARK = os.getenv("BENCHMARK", "molecular_Designer_Env")
MAX_STEPS = 10
TEMPERATURE = 0.7
MAX_TOKENS = 150
SUCCESS_SCORE_THRESHOLD = 0.85 # normalized score in [0, 1]
# Replaced total max reward tracking since it's now dynamically evaluated up to 1.0 per task
MAX_TOTAL_REWARD = 1.0
SYSTEM_PROMPT = textwrap.dedent(
"""
You are an expert medicinal chemist AI acting in a molecular design environment.
Each turn you will receive feedback on a molecule you design.
Your goal is to provide a valid SMILES string that maximizes the task's unique reward.
Reply with exactly one SMILES string - no quotes, no prefixes, just the SMILES string (e.g. CCO).
"""
).strip()
def log_start(task: str, env: str, model: str) -> None:
print(f"[START] task={task} env={env} model={model}", flush=True)
def log_step(step: int, action: str, reward: float, done: bool, error: Optional[str]) -> None:
error_val = error if error else "null"
done_val = str(done).lower()
print(
f"[STEP] step={step} action={action} reward={reward:.2f} done={done_val} error={error_val}",
flush=True,
)
def log_end(success: bool, steps: int, score: float, rewards: List[float]) -> None:
rewards_str = ",".join(f"{r:.2f}" for r in rewards)
print(f"[END] success={str(success).lower()} steps={steps} score={score:.3f} rewards={rewards_str}", flush=True)
def build_user_prompt(step: int, last_feedback: str, last_reward: float, history: List[str]) -> str:
history_block = "\n".join(history[-4:]) if history else "None"
return textwrap.dedent(
f"""
Step: {step}
Last feedback: {last_feedback!r}
Last reward: {last_reward:.3f}
Previous steps history:
{history_block}
Generate your next SMILES string to improve your score. Follow the task's rules and constraints exactly. Target MW or LogP where applicable.
"""
).strip()
def get_model_message(client: OpenAI, step: int, last_feedback: str, last_reward: float, history: List[str]) -> str:
user_prompt = build_user_prompt(step, last_feedback, last_reward, history)
try:
completion = client.chat.completions.create(
model=MODEL_NAME,
messages=[
{"role": "system", "content": SYSTEM_PROMPT},
{"role": "user", "content": user_prompt},
],
temperature=TEMPERATURE,
max_tokens=MAX_TOKENS,
stream=False,
)
text = (completion.choices[0].message.content or "").strip()
return text if text else "CCO"
except Exception as exc:
print(f"[DEBUG] Model request failed: {exc}", flush=True)
return "CCO"
def normalize_base_url(base_url: Optional[str]) -> Optional[str]:
"""Normalize user-provided BASE_URL into an API runtime URL.
If a Hugging Face repo page URL is provided (huggingface.co/spaces/user/space),
convert it to the runtime domain (https://user-space.hf.space).
"""
if not base_url:
return base_url
cleaned = base_url.strip().rstrip("/")
parsed = urlparse(cleaned)
# Handle Hugging Face repo page URL -> runtime URL used by API/WebSocket.
if parsed.netloc == "huggingface.co":
parts = [p for p in parsed.path.strip("/").split("/") if p]
if len(parts) >= 3 and parts[0] == "spaces":
owner, space = parts[1], parts[2]
return f"https://{owner}-{space}.hf.space"
# Avoid accidentally pointing at the web UI path.
if cleaned.endswith("/web"):
return cleaned[:-4]
return cleaned
async def main() -> None:
client = OpenAI(base_url=API_BASE_URL, api_key=API_KEY)
runtime_base_url = normalize_base_url(BASE_URL)
if runtime_base_url:
env = MolecularDesignerEnvEnv(base_url=runtime_base_url)
else:
if not IMAGE_NAME:
raise ValueError(
"Set BASE_URL for deployed env, or IMAGE_NAME for local docker env."
)
env = await MolecularDesignerEnvEnv.from_docker_image(IMAGE_NAME)
history: List[str] = []
rewards: List[float] = []
steps_taken = 0
score = 0.0
success = False
log_start(task=TASK_NAME, env=BENCHMARK, model=MODEL_NAME)
try:
result = await asyncio.to_thread(env.reset) # Ensure async execution correctly maps
last_feedback = result.observation.feedback
last_reward = 0.0
for step in range(1, MAX_STEPS + 1):
if result.done:
break
message = get_model_message(client, step, last_feedback, last_reward, history)
result = await asyncio.to_thread(env.step, MolecularDesignerEnvAction(smiles=message))
obs = result.observation
reward = result.reward or 0.0
done = result.done
error = None
rewards.append(reward)
steps_taken = step
last_feedback = obs.feedback
last_reward = reward
log_step(step=step, action=message, reward=reward, done=done, error=error)
history.append(f"Step {step}: {message!r} -> reward {reward:+.3f}")
if done:
break
score = max(rewards) if rewards else 0.0
score = min(max(score, 0.0), 1.0) # clamp to [0, 1]
success = score >= SUCCESS_SCORE_THRESHOLD
finally:
try:
env.close()
except Exception as e:
print(f"[DEBUG] env.close() error (container cleanup): {e}", flush=True)
log_end(success=success, steps=steps_taken, score=score, rewards=rewards)
if __name__ == "__main__":
asyncio.run(main())