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Create MulinLab organization profile card

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  1. README.md +41 -5
  2. index.html +56 -17
  3. style.css +47 -26
README.md CHANGED
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  ---
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- title: README
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- emoji: 🚀
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- colorFrom: indigo
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- colorTo: green
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  sdk: static
 
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  pinned: false
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  ---
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- Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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+ title: MulinLab | hEvo
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+ emoji: "🧬"
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+ colorFrom: blue
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+ colorTo: cyan
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  sdk: static
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+ short_description: Population-aware DNA modeling for human genomics
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  pinned: false
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  ---
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+ <div align="center">
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+ <img src="https://raw.githubusercontent.com/mulinlab/hEVO/main/header.png" alt="hEvo: learning human genetic variation across populations and evolution" width="100%">
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+ <h1>MulinLab</h1>
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+ <p><strong>Population-aware DNA modeling for human genomics</strong></p>
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+ <p>We study how human genetic diversity and haplotype sequence variation inform genome representation, variant effect, regulatory annotation, ancestry, and evolution.</p>
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+ <p>
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+ <a href="https://github.com/mulinlab/hEVO"><img src="https://img.shields.io/badge/GitHub-hEVO-181717?style=flat-square&logo=github" alt="hEVO source code on GitHub"></a>
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+ <a href="https://huggingface.co/datasets/MulinLab/hEvo-benchmarks"><img src="https://img.shields.io/badge/Hugging%20Face-Benchmarks-FFD21E?style=flat-square&logo=huggingface&logoColor=000" alt="hEvo benchmark dataset on Hugging Face"></a>
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+ </p>
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+ </div>
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+
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+ ---
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+
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+ ## Explore hEvo
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+
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+ | Resource | What it contains | Access |
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+ |---|---|---|
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+ | [hEVO-base-o](https://huggingface.co/MulinLab/hEVO-base-o) | 87.1M-parameter, 1,024-nt model trained with masked language modeling on public 1000 Genomes Project and HGDP sequences. | Manual approval for peer reviewers |
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+ | [hEVO-large-o](https://huggingface.co/MulinLab/hEVO-large-o) | 319.5M-parameter model in the same public-data training family. | Manual approval for peer reviewers |
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+ | [hEvo-benchmarks](https://huggingface.co/datasets/MulinLab/hEvo-benchmarks) | 15 task bundles with frozen inputs or source downloaders, task-specific build scripts, and documentation. | Manual approval for peer reviewers |
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+ | [GitHub source repository](https://github.com/mulinlab/hEVO) | Training and benchmark workflows, configurations, result tables, figures, and reproduction guides. | Public repository |
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+
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+ The `-o` suffix identifies a public-data training variant. It does **not** mean that model weights are openly licensed. Model-weight licensing has not been confirmed. Benchmark files may carry different terms; follow the cited source publication and task documentation for each dataset.
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+
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+ ## How to get started
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+
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+ 1. **Choose a model or benchmark task** from the table above.
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+ 2. **Request access** on the corresponding Hugging Face page. Model and dataset access is manually reviewed for peer-review use.
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+ 3. **Use the card's quick start** after approval. The model cards include DNA embedding and single-nucleotide likelihood examples; the dataset card lists task-specific download and build instructions.
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+ 4. **Reproduce the workflows** with the [GitHub guides](https://github.com/mulinlab/hEVO), which keep model code, evaluation workflows, and source result tables together.
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+
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+ ## Scientific context and citation
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+
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+ The [GitHub repository](https://github.com/mulinlab/hEVO) describes the hEvo training stages, evaluation protocols, source tables, and figure workflows. For hEvo citation details, see the repository's [Citation section](https://github.com/mulinlab/hEVO#citation).
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+
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+ For questions about access or scientific use, contact MulinLab through the relevant repository's Hugging Face discussion page.
index.html CHANGED
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  <!doctype html>
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- <html>
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- <head>
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- <meta charset="utf-8" />
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- <meta name="viewport" content="width=device-width" />
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- <title>My static Space</title>
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- <link rel="stylesheet" href="style.css" />
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- </head>
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- <body>
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- <div class="card">
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- <h1>Welcome to your static Space!</h1>
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- <p>You can modify this app directly by editing <i>index.html</i> in the Files and versions tab.</p>
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- <p>
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- Also don't forget to check the
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- <a href="https://huggingface.co/docs/hub/spaces" target="_blank">Spaces documentation</a>.
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- </p>
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- </div>
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- </body>
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  </html>
 
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  <!doctype html>
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+ <html lang="en">
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+ <head>
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+ <meta charset="utf-8">
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+ <meta name="viewport" content="width=device-width, initial-scale=1">
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+ <meta name="description" content="MulinLab research in population-aware DNA modeling, human genetic variation, and evolution.">
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+ <title>MulinLab | hEvo</title>
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+ <link rel="stylesheet" href="style.css">
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+ </head>
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+ <body>
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+ <main class="page">
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+ <header class="hero">
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+ <img class="banner" src="https://raw.githubusercontent.com/mulinlab/hEVO/main/header.png" alt="hEvo: learning human genetic variation across populations and evolution">
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+ <p class="eyebrow">MULINLAB · POPULATION GENOMICS</p>
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+ <h1>Human genetic variation, modeled through haplotypes.</h1>
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+ <p class="intro">hEvo learns DNA representations from population-scale haplotype sequence variation to support research in variant effects, regulatory annotation, ancestry, and evolution.</p>
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+ <div class="actions">
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+ <a class="button primary" href="https://github.com/mulinlab/hEVO">Explore code &amp; workflows <span aria-hidden="true">↗</span></a>
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+ <a class="button secondary" href="https://huggingface.co/MulinLab">Browse Hugging Face repositories <span aria-hidden="true">↗</span></a>
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+ </div>
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+ </header>
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+
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+ <section aria-labelledby="models-title">
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+ <div class="section-heading">
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+ <div><p class="eyebrow">MODELS</p><h2 id="models-title">hEvo checkpoints</h2></div>
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+ <p>Both model cards include DNA embedding and single-nucleotide likelihood examples.</p>
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+ </div>
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+ <div class="grid">
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+ <article class="card model-card">
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+ <div class="card-top"><span class="scale">BASE</span><span class="size">87.1M parameters</span></div>
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+ <h3>hEVO-base-o</h3>
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+ <p>1,024-nt context · masked language modeling · public 1000 Genomes Project and HGDP sequences.</p>
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+ <a class="card-link" href="https://huggingface.co/MulinLab/hEVO-base-o">Read model card <span aria-hidden="true">→</span></a>
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+ </article>
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+ <article class="card model-card">
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+ <div class="card-top"><span class="scale">LARGE</span><span class="size">319.5M parameters</span></div>
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+ <h3>hEVO-large-o</h3>
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+ <p>1,024-nt context · masked language modeling · public 1000 Genomes Project and HGDP sequences.</p>
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+ <a class="card-link" href="https://huggingface.co/MulinLab/hEVO-large-o">Read model card <span aria-hidden="true">→</span></a>
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+ </article>
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+ <article class="card data-card">
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+ <div class="card-top"><span class="scale">DATA</span><span class="size">15 task bundles</span></div>
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+ <h3>hEvo benchmarks</h3>
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+ <p>Frozen evaluation inputs or source downloaders, task-specific build scripts, and construction documentation.</p>
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+ <a class="card-link" href="https://huggingface.co/datasets/MulinLab/hEvo-benchmarks">Browse dataset card <span aria-hidden="true">→</span></a>
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+ </article>
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+ </div>
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+ </section>
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+
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+ <aside class="access" aria-labelledby="access-title">
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+ <div class="access-mark" aria-hidden="true">i</div>
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+ <div><h2 id="access-title">Peer-review access</h2><p>Model checkpoints and benchmark data are gated and manually reviewed by MulinLab for peer-review use. Request access on the relevant Hugging Face page. The <code>-o</code> suffix denotes public-data training; it does not imply an open-weights license. Dataset terms vary by source.</p></div>
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+ </aside>
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+
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+ <footer><span>Scientific workflows and source tables are maintained in the <a href="https://github.com/mulinlab/hEVO">hEvo GitHub repository</a>.</span><a href="https://huggingface.co/MulinLab">MulinLab on Hugging Face ↗</a></footer>
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+ </main>
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+ </body>
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  </html>
style.css CHANGED
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- .card p:last-child {
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- margin-bottom: 0;
 
 
 
 
 
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  }
 
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