Commit ·
4eefa6e
1
Parent(s): 733448b
Create MulinLab organization profile card
Browse files- README.md +41 -5
- index.html +56 -17
- style.css +47 -26
README.md
CHANGED
|
@@ -1,10 +1,46 @@
|
|
| 1 |
---
|
| 2 |
-
title:
|
| 3 |
-
emoji:
|
| 4 |
-
colorFrom:
|
| 5 |
-
colorTo:
|
| 6 |
sdk: static
|
|
|
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
+
title: MulinLab | hEvo
|
| 3 |
+
emoji: "🧬"
|
| 4 |
+
colorFrom: blue
|
| 5 |
+
colorTo: cyan
|
| 6 |
sdk: static
|
| 7 |
+
short_description: Population-aware DNA modeling for human genomics
|
| 8 |
pinned: false
|
| 9 |
---
|
| 10 |
|
| 11 |
+
<div align="center">
|
| 12 |
+
<img src="https://raw.githubusercontent.com/mulinlab/hEVO/main/header.png" alt="hEvo: learning human genetic variation across populations and evolution" width="100%">
|
| 13 |
+
<h1>MulinLab</h1>
|
| 14 |
+
<p><strong>Population-aware DNA modeling for human genomics</strong></p>
|
| 15 |
+
<p>We study how human genetic diversity and haplotype sequence variation inform genome representation, variant effect, regulatory annotation, ancestry, and evolution.</p>
|
| 16 |
+
<p>
|
| 17 |
+
<a href="https://github.com/mulinlab/hEVO"><img src="https://img.shields.io/badge/GitHub-hEVO-181717?style=flat-square&logo=github" alt="hEVO source code on GitHub"></a>
|
| 18 |
+
<a href="https://huggingface.co/datasets/MulinLab/hEvo-benchmarks"><img src="https://img.shields.io/badge/Hugging%20Face-Benchmarks-FFD21E?style=flat-square&logo=huggingface&logoColor=000" alt="hEvo benchmark dataset on Hugging Face"></a>
|
| 19 |
+
</p>
|
| 20 |
+
</div>
|
| 21 |
+
|
| 22 |
+
---
|
| 23 |
+
|
| 24 |
+
## Explore hEvo
|
| 25 |
+
|
| 26 |
+
| Resource | What it contains | Access |
|
| 27 |
+
|---|---|---|
|
| 28 |
+
| [hEVO-base-o](https://huggingface.co/MulinLab/hEVO-base-o) | 87.1M-parameter, 1,024-nt model trained with masked language modeling on public 1000 Genomes Project and HGDP sequences. | Manual approval for peer reviewers |
|
| 29 |
+
| [hEVO-large-o](https://huggingface.co/MulinLab/hEVO-large-o) | 319.5M-parameter model in the same public-data training family. | Manual approval for peer reviewers |
|
| 30 |
+
| [hEvo-benchmarks](https://huggingface.co/datasets/MulinLab/hEvo-benchmarks) | 15 task bundles with frozen inputs or source downloaders, task-specific build scripts, and documentation. | Manual approval for peer reviewers |
|
| 31 |
+
| [GitHub source repository](https://github.com/mulinlab/hEVO) | Training and benchmark workflows, configurations, result tables, figures, and reproduction guides. | Public repository |
|
| 32 |
+
|
| 33 |
+
The `-o` suffix identifies a public-data training variant. It does **not** mean that model weights are openly licensed. Model-weight licensing has not been confirmed. Benchmark files may carry different terms; follow the cited source publication and task documentation for each dataset.
|
| 34 |
+
|
| 35 |
+
## How to get started
|
| 36 |
+
|
| 37 |
+
1. **Choose a model or benchmark task** from the table above.
|
| 38 |
+
2. **Request access** on the corresponding Hugging Face page. Model and dataset access is manually reviewed for peer-review use.
|
| 39 |
+
3. **Use the card's quick start** after approval. The model cards include DNA embedding and single-nucleotide likelihood examples; the dataset card lists task-specific download and build instructions.
|
| 40 |
+
4. **Reproduce the workflows** with the [GitHub guides](https://github.com/mulinlab/hEVO), which keep model code, evaluation workflows, and source result tables together.
|
| 41 |
+
|
| 42 |
+
## Scientific context and citation
|
| 43 |
+
|
| 44 |
+
The [GitHub repository](https://github.com/mulinlab/hEVO) describes the hEvo training stages, evaluation protocols, source tables, and figure workflows. For hEvo citation details, see the repository's [Citation section](https://github.com/mulinlab/hEVO#citation).
|
| 45 |
+
|
| 46 |
+
For questions about access or scientific use, contact MulinLab through the relevant repository's Hugging Face discussion page.
|
index.html
CHANGED
|
@@ -1,19 +1,58 @@
|
|
| 1 |
<!doctype html>
|
| 2 |
-
<html>
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
</html>
|
|
|
|
| 1 |
<!doctype html>
|
| 2 |
+
<html lang="en">
|
| 3 |
+
<head>
|
| 4 |
+
<meta charset="utf-8">
|
| 5 |
+
<meta name="viewport" content="width=device-width, initial-scale=1">
|
| 6 |
+
<meta name="description" content="MulinLab research in population-aware DNA modeling, human genetic variation, and evolution.">
|
| 7 |
+
<title>MulinLab | hEvo</title>
|
| 8 |
+
<link rel="stylesheet" href="style.css">
|
| 9 |
+
</head>
|
| 10 |
+
<body>
|
| 11 |
+
<main class="page">
|
| 12 |
+
<header class="hero">
|
| 13 |
+
<img class="banner" src="https://raw.githubusercontent.com/mulinlab/hEVO/main/header.png" alt="hEvo: learning human genetic variation across populations and evolution">
|
| 14 |
+
<p class="eyebrow">MULINLAB · POPULATION GENOMICS</p>
|
| 15 |
+
<h1>Human genetic variation, modeled through haplotypes.</h1>
|
| 16 |
+
<p class="intro">hEvo learns DNA representations from population-scale haplotype sequence variation to support research in variant effects, regulatory annotation, ancestry, and evolution.</p>
|
| 17 |
+
<div class="actions">
|
| 18 |
+
<a class="button primary" href="https://github.com/mulinlab/hEVO">Explore code & workflows <span aria-hidden="true">↗</span></a>
|
| 19 |
+
<a class="button secondary" href="https://huggingface.co/MulinLab">Browse Hugging Face repositories <span aria-hidden="true">↗</span></a>
|
| 20 |
+
</div>
|
| 21 |
+
</header>
|
| 22 |
+
|
| 23 |
+
<section aria-labelledby="models-title">
|
| 24 |
+
<div class="section-heading">
|
| 25 |
+
<div><p class="eyebrow">MODELS</p><h2 id="models-title">hEvo checkpoints</h2></div>
|
| 26 |
+
<p>Both model cards include DNA embedding and single-nucleotide likelihood examples.</p>
|
| 27 |
+
</div>
|
| 28 |
+
<div class="grid">
|
| 29 |
+
<article class="card model-card">
|
| 30 |
+
<div class="card-top"><span class="scale">BASE</span><span class="size">87.1M parameters</span></div>
|
| 31 |
+
<h3>hEVO-base-o</h3>
|
| 32 |
+
<p>1,024-nt context · masked language modeling · public 1000 Genomes Project and HGDP sequences.</p>
|
| 33 |
+
<a class="card-link" href="https://huggingface.co/MulinLab/hEVO-base-o">Read model card <span aria-hidden="true">→</span></a>
|
| 34 |
+
</article>
|
| 35 |
+
<article class="card model-card">
|
| 36 |
+
<div class="card-top"><span class="scale">LARGE</span><span class="size">319.5M parameters</span></div>
|
| 37 |
+
<h3>hEVO-large-o</h3>
|
| 38 |
+
<p>1,024-nt context · masked language modeling · public 1000 Genomes Project and HGDP sequences.</p>
|
| 39 |
+
<a class="card-link" href="https://huggingface.co/MulinLab/hEVO-large-o">Read model card <span aria-hidden="true">→</span></a>
|
| 40 |
+
</article>
|
| 41 |
+
<article class="card data-card">
|
| 42 |
+
<div class="card-top"><span class="scale">DATA</span><span class="size">15 task bundles</span></div>
|
| 43 |
+
<h3>hEvo benchmarks</h3>
|
| 44 |
+
<p>Frozen evaluation inputs or source downloaders, task-specific build scripts, and construction documentation.</p>
|
| 45 |
+
<a class="card-link" href="https://huggingface.co/datasets/MulinLab/hEvo-benchmarks">Browse dataset card <span aria-hidden="true">→</span></a>
|
| 46 |
+
</article>
|
| 47 |
+
</div>
|
| 48 |
+
</section>
|
| 49 |
+
|
| 50 |
+
<aside class="access" aria-labelledby="access-title">
|
| 51 |
+
<div class="access-mark" aria-hidden="true">i</div>
|
| 52 |
+
<div><h2 id="access-title">Peer-review access</h2><p>Model checkpoints and benchmark data are gated and manually reviewed by MulinLab for peer-review use. Request access on the relevant Hugging Face page. The <code>-o</code> suffix denotes public-data training; it does not imply an open-weights license. Dataset terms vary by source.</p></div>
|
| 53 |
+
</aside>
|
| 54 |
+
|
| 55 |
+
<footer><span>Scientific workflows and source tables are maintained in the <a href="https://github.com/mulinlab/hEVO">hEvo GitHub repository</a>.</span><a href="https://huggingface.co/MulinLab">MulinLab on Hugging Face ↗</a></footer>
|
| 56 |
+
</main>
|
| 57 |
+
</body>
|
| 58 |
</html>
|
style.css
CHANGED
|
@@ -1,28 +1,49 @@
|
|
| 1 |
-
|
| 2 |
-
|
| 3 |
-
|
| 4 |
-
}
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
|
| 9 |
-
}
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
}
|
| 17 |
-
|
| 18 |
-
.
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
|
| 22 |
-
|
| 23 |
-
|
| 24 |
-
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 25 |
|
| 26 |
-
|
| 27 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 28 |
}
|
|
|
|
| 1 |
+
* { box-sizing: border-box; }
|
| 2 |
+
:root { color-scheme: light dark; --ink: #142b52; --muted: #52637d; --blue: #164c9a; --teal: #00aab0; --line: #d8e5f4; --paper: #ffffff; --wash: #f4f8fc; }
|
| 3 |
+
body { margin: 0; background: var(--wash); color: var(--ink); font-family: Inter, ui-sans-serif, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", sans-serif; line-height: 1.6; }
|
| 4 |
+
a { color: inherit; }
|
| 5 |
+
.page { width: min(1120px, calc(100% - 40px)); margin: 34px auto 28px; }
|
| 6 |
+
.hero, .card, .access { background: var(--paper); border: 1px solid var(--line); box-shadow: 0 12px 34px rgba(27, 67, 117, .07); }
|
| 7 |
+
.hero { padding: 20px 20px 34px; border-radius: 24px; }
|
| 8 |
+
.banner { display: block; width: 100%; height: auto; border-radius: 16px; }
|
| 9 |
+
.eyebrow { margin: 28px 0 8px; color: var(--blue); font-size: .76rem; font-weight: 800; letter-spacing: .14em; }
|
| 10 |
+
h1, h2, h3, p { margin-top: 0; }
|
| 11 |
+
h1 { max-width: 820px; margin-bottom: 12px; font-size: clamp(2rem, 5vw, 3.45rem); line-height: 1.08; letter-spacing: -.045em; }
|
| 12 |
+
.intro { max-width: 760px; margin-bottom: 22px; color: var(--muted); font-size: 1.08rem; }
|
| 13 |
+
.actions { display: flex; flex-wrap: wrap; gap: 10px; }
|
| 14 |
+
.button { display: inline-flex; align-items: center; gap: 10px; min-height: 44px; padding: 10px 16px; border: 1px solid var(--line); border-radius: 10px; font-weight: 700; text-decoration: none; }
|
| 15 |
+
.button:focus-visible, a:focus-visible { outline: 3px solid #11a8ad; outline-offset: 3px; }
|
| 16 |
+
.button.primary { border-color: var(--blue); background: var(--blue); color: white; }
|
| 17 |
+
.button.secondary { background: white; color: var(--blue); }
|
| 18 |
+
.section-heading { display: flex; align-items: end; justify-content: space-between; gap: 24px; margin: 38px 2px 16px; }
|
| 19 |
+
.section-heading .eyebrow { margin: 0 0 4px; }
|
| 20 |
+
.section-heading h2 { margin: 0; font-size: 1.75rem; letter-spacing: -.025em; }
|
| 21 |
+
.section-heading > p { max-width: 440px; margin: 0 0 3px; color: var(--muted); }
|
| 22 |
+
.grid { display: grid; grid-template-columns: repeat(3, minmax(0, 1fr)); gap: 14px; }
|
| 23 |
+
.card { min-height: 220px; padding: 22px; border-radius: 18px; }
|
| 24 |
+
.card-top { display: flex; justify-content: space-between; align-items: center; gap: 10px; margin-bottom: 20px; }
|
| 25 |
+
.scale { padding: 4px 9px; border-radius: 999px; background: #eaf3ff; color: var(--blue); font-size: .7rem; font-weight: 800; letter-spacing: .1em; }
|
| 26 |
+
.data-card .scale { background: #e4f8f7; color: #007e86; }
|
| 27 |
+
.size { color: var(--muted); font-size: .82rem; }
|
| 28 |
+
.card h3 { margin-bottom: 8px; font-size: 1.3rem; }
|
| 29 |
+
.card p { min-height: 72px; margin-bottom: 14px; color: var(--muted); font-size: .94rem; }
|
| 30 |
+
.card-link { color: var(--blue); font-weight: 750; text-decoration: none; }
|
| 31 |
+
.card-link:hover, footer a:hover { text-decoration: underline; }
|
| 32 |
+
.access { display: flex; gap: 15px; margin-top: 18px; padding: 21px; border-radius: 16px; background: #f1f8ff; }
|
| 33 |
+
.access-mark { display: grid; flex: 0 0 28px; height: 28px; place-items: center; border-radius: 50%; background: #dceeff; color: var(--blue); font-weight: 800; }
|
| 34 |
+
.access h2 { margin-bottom: 5px; font-size: 1.05rem; }
|
| 35 |
+
.access p { margin-bottom: 0; color: var(--muted); font-size: .92rem; }
|
| 36 |
+
code { padding: 1px 5px; border-radius: 4px; background: #e8eef6; color: #17365f; }
|
| 37 |
+
footer { display: flex; flex-wrap: wrap; justify-content: space-between; gap: 12px; margin: 24px 2px 0; color: var(--muted); font-size: .88rem; }
|
| 38 |
+
footer a { color: var(--blue); font-weight: 700; text-decoration: none; }
|
| 39 |
+
@media (max-width: 800px) { .grid { grid-template-columns: 1fr 1fr; } .section-heading { align-items: start; flex-direction: column; gap: 8px; } }
|
| 40 |
+
@media (max-width: 560px) { .page { width: min(100% - 24px, 1120px); margin-top: 12px; } .hero { padding: 12px 12px 24px; border-radius: 17px; } .banner { border-radius: 10px; } .grid { grid-template-columns: 1fr; } .card { min-height: 0; } .card p { min-height: 0; } .access { align-items: start; padding: 16px; } }
|
| 41 |
|
| 42 |
+
@media (prefers-color-scheme: dark) {
|
| 43 |
+
:root { --ink: #e7effb; --muted: #b5c2d5; --blue: #92bdff; --teal: #52d7d5; --line: #2c405d; --paper: #101c2c; --wash: #091321; }
|
| 44 |
+
.scale { background: #1b3350; }
|
| 45 |
+
.data-card .scale { background: #103538; color: #75e0dc; }
|
| 46 |
+
.access { background: #12263b; }
|
| 47 |
+
.access-mark { background: #1b3856; }
|
| 48 |
+
code { background: #23364d; color: #d7e8ff; }
|
| 49 |
}
|