Update utils.py
Browse files
utils.py
CHANGED
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@@ -13,18 +13,6 @@ import zipfile
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import subprocess
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import nibabel as nib
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SKIP_KEYWORDS = ["localizer", "scout", "loc"]
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for nifti_file in sorted(nifti_files):
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sequence_name = nifti_file.replace(".nii.gz", "")
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# Skip localizer images
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if any(skip in sequence_name.lower() for skip in SKIP_KEYWORDS):
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print(f"Skipping localizer: {sequence_name}")
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continue
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nifti_path = os.path.join(nifti_dir, nifti_file)
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def convert_dicom_zip_to_nifti(zip_file):
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"""
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Takes a uploaded ZIP file containing DICOM files.
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@@ -32,6 +20,8 @@ def convert_dicom_zip_to_nifti(zip_file):
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Returns list of (sequence_name, PIL Image) tuples.
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"""
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# Step 1: Setup temp directories
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unique_id = uuid.uuid4().hex
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tmp_dir = f"/tmp/dicom_{unique_id}"
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@@ -66,6 +56,12 @@ def convert_dicom_zip_to_nifti(zip_file):
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for nifti_file in sorted(nifti_files):
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sequence_name = nifti_file.replace(".nii.gz", "")
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nifti_path = os.path.join(nifti_dir, nifti_file)
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try:
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import subprocess
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import nibabel as nib
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def convert_dicom_zip_to_nifti(zip_file):
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"""
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Takes a uploaded ZIP file containing DICOM files.
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Returns list of (sequence_name, PIL Image) tuples.
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"""
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SKIP_KEYWORDS = ["localizer", "scout", "loc"]
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# Step 1: Setup temp directories
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unique_id = uuid.uuid4().hex
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tmp_dir = f"/tmp/dicom_{unique_id}"
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for nifti_file in sorted(nifti_files):
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sequence_name = nifti_file.replace(".nii.gz", "")
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# Skip localizer images
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if any(skip in sequence_name.lower() for skip in SKIP_KEYWORDS):
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print(f"Skipping localizer: {sequence_name}")
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continue
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nifti_path = os.path.join(nifti_dir, nifti_file)
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try:
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