Commit ·
028fc47
1
Parent(s): d9fca17
Fix: Expand intervals to min 16384bp for AlphaGenome
Browse files
app.py
CHANGED
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@@ -82,12 +82,12 @@ else:
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# Initialize Client
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model = dna_client.create(api_key)
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# Define
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#
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gene_coords = {
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-
"INS": {"chr": "chr11", "start":
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"SCN9A": {"chr": "chr2", "start":
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"MMP9": {"chr": "chr20", "start":
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}
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gene_sym = gene_choice.split(' ')[0]
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# Initialize Client
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model = dna_client.create(api_key)
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# Define coordinates for demo genes - AlphaGenome needs minimum 16384bp sequences
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# Using 20000bp intervals centered on each gene
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gene_coords = {
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"INS": {"chr": "chr11", "start": 2150000, "end": 2170000, "pos": 2160000},
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"SCN9A": {"chr": "chr2", "start": 166190000, "end": 166210000, "pos": 166200000},
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"MMP9": {"chr": "chr20", "start": 46005000, "end": 46025000, "pos": 46015000}
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}
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gene_sym = gene_choice.split(' ')[0]
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