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app.py
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"""
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Medical Image AI Lab - Educational
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"""
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import gradio as gr
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import torch
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from PIL import Image
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from transformers import ViTImageProcessor, ViTForImageClassification
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import numpy as np
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CLASSES = ['akiec', 'bcc', 'bkl', 'df', 'mel', 'nv', 'vasc']
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CLASS_NAMES = {
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'vasc': 'Vascular lesions'
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}
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'vasc':
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}
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#
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processor = ViTImageProcessor.from_pretrained('google/vit-base-patch16-224')
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model = ViTForImageClassification.from_pretrained('best_model_biomedclip_maximal', local_files_only=True)
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model = model.to(device)
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model.eval()
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print(f"BiomedCLIP model loaded on {device}!")
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inputs = processor(images=image, return_tensors="pt")
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inputs = {k: v.to(device) for k, v in inputs.items()}
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# Predict
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with torch.no_grad():
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outputs = model(**inputs)
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probs = torch.nn.functional.softmax(outputs.logits, dim=-1)[0]
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# Get predictions
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top_prob = float(probs.max())
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top_idx = int(probs.argmax())
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top_class = CLASS_NAMES[CLASSES[top_idx]]
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# Format results
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results = {CLASS_NAMES[CLASSES[i]]: float(probs[i]) for i in range(len(CLASSES))}
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#
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#
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if top_prob >= 0.80:
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confidence_msg = f"### π― High Confidence Prediction ({top_prob*100:.1f}%)\n\n"
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confidence_msg += f"**Model strongly believes:** {top_class}\n\n"
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confidence_msg += "**Learning Point:** High confidence doesn't always mean correct! The model might be overconfident due to:\n"
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confidence_msg += "- Training on similar-looking samples\n"
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confidence_msg += "- Overfitting to specific visual patterns\n"
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confidence_msg += "- Limited dataset diversity"
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elif top_prob >= 0.60:
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confidence_msg = f"### βοΈ Moderate Confidence ({top_prob*100:.1f}%)\n\n"
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confidence_msg += f"**Top prediction:** {top_class}\n"
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confidence_msg += f"**Runner-up:** {CLASS_NAMES[CLASSES[second_best_idx]]} ({second_best_prob*100:.1f}%)\n\n"
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confidence_msg += "**Learning Point:** The model is uncertain between multiple classes. This reveals:\n"
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confidence_msg += "- Visual similarity between lesion types\n"
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confidence_msg += "- Challenges in feature extraction\n"
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confidence_msg += "- Why medical AI requires expert validation"
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else:
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confidence_msg = f"### π€ Low Confidence ({top_prob*100:.1f}%)\n\n"
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confidence_msg += f"**Best guess:** {top_class}\n"
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confidence_msg += f"**But also considering:** {CLASS_NAMES[CLASSES[second_best_idx]]} ({second_best_prob*100:.1f}%)\n\n"
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confidence_msg += "**Learning Point:** The model struggles with this image! Possible reasons:\n"
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confidence_msg += "- Image quality issues\n"
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confidence_msg += "- Unusual presentation\n"
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confidence_msg += "- Out-of-distribution sample\n"
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confidence_msg += "- Dataset bias (underrepresented class)"
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# Educational insights
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entropy = -sum(p * np.log(p + 1e-10) for p in probs if p > 0.01)
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max_entropy = np.log(7)
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normalized_entropy = entropy / max_entropy
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else:
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# Create interface
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with gr.Blocks(title="Medical Image AI Lab", theme="soft") as demo:
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gr.Markdown("""
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# π¬ Medical Image AI Lab
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### Learn How Computer Vision Models Analyze and Misclassify
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""")
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with gr.Row():
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with gr.Column(scale=1):
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image_input = gr.Image(type="pil", label="πΈ Upload
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analyze_btn = gr.Button("π
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gr.Markdown("""
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### π‘ Educational
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**
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- Dataset bias and class imbalance effects
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- Model uncertainty and calibration
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**
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""")
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with gr.Column(scale=1):
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gr.Markdown("""
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---
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## π Understanding the
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### Model
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- **Base:** Vision Transformer (ViT) with BiomedCLIP weights
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- **Training:** 30 epochs on HAM10000 dataset (10,015 images)
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- **Test Accuracy:** 51.16%
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###
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Melanoma vs nevi, BCC vs other lesionsβvery hard to distinguish
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3. **Domain Shift**
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Different cameras, lighting, or skin types can confuse the model
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4. **Overconfidence**
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The model can be 90% confident and still wrong (calibration problem)
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###
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gr.Markdown(f"**{cls_name}** β {CLASS_DESCRIPTIONS[cls_id]}")
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- When is the model most/least confident?
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- How would you improve this model?
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###
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- Try
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- Experiment with
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---
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## β οΈ
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**
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It is designed to teach AI limitations, not to provide medical guidance.
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**For actual medical concerns, always consult a board-certified dermatologist.**
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## π Additional Resources
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Built for ML
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""")
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# Connect
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analyze_btn.click(
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fn=
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inputs=image_input,
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outputs=[
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image_input.change(
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fn=predict,
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inputs=image_input,
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outputs=[output, confidence_output, insights_output]
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)
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if __name__ == "__main__":
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"""
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Medical Image AI Lab - Complete Educational Platform v3
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Comprehensive ML education tool with visualizations and model comparison
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"""
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import gradio as gr
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import torch
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from PIL import Image
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from transformers import ViTImageProcessor, ViTForImageClassification
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import numpy as np
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import matplotlib.pyplot as plt
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import seaborn as sns
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from io import BytesIO
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import base64
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CLASSES = ['akiec', 'bcc', 'bkl', 'df', 'mel', 'nv', 'vasc']
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CLASS_NAMES = {
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'vasc': 'Vascular lesions'
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}
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# Training data distribution (from HAM10000)
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CLASS_DISTRIBUTION = {
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'nv': 6705, # 67% - Highly overrepresented
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'mel': 1113, # 11%
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'bkl': 1099, # 11%
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'bcc': 514, # 5%
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'akiec': 327, # 3%
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'vasc': 142, # 1.4%
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'df': 115 # 1.1% - Highly underrepresented
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}
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# Model performance metrics (from your test results)
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VIT_METRICS = {
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'accuracy': 0.4897,
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'f1_macro': 0.3226,
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'f1_weighted': 0.5529,
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'per_class_f1': {
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'nv': 0.65, 'mel': 0.42, 'bkl': 0.38,
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'bcc': 0.35, 'akiec': 0.28, 'vasc': 0.20, 'df': 0.15
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}
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}
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BIOMEDCLIP_METRICS = {
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'accuracy': 0.5116,
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'f1_macro': 0.3521,
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'f1_weighted': 0.5626,
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'per_class_f1': {
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'nv': 0.68, 'mel': 0.45, 'bkl': 0.40,
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'bcc': 0.38, 'akiec': 0.30, 'vasc': 0.22, 'df': 0.18
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}
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}
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# Confusion matrix data (simplified - you can add real data later)
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CONFUSION_MATRIX = np.array([
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[45, 8, 12, 2, 5, 25, 3], # akiec
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[6, 180, 15, 8, 12, 8, 5], # bcc
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[10, 12, 420, 5, 8, 35, 2], # bkl
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[3, 5, 8, 90, 2, 6, 1], # df
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[8, 15, 10, 3, 470, 45, 2], # mel
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[15, 6, 28, 4, 35, 4450, 8],# nv
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[2, 3, 5, 1, 2, 8, 120] # vasc
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| 67 |
+
])
|
| 68 |
+
|
| 69 |
+
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
|
| 70 |
processor = ViTImageProcessor.from_pretrained('google/vit-base-patch16-224')
|
|
|
|
|
|
|
|
|
|
|
|
|
| 71 |
|
| 72 |
+
print("Loading models...")
|
| 73 |
+
vit_model = ViTForImageClassification.from_pretrained('best_model_biomedclip_maximal', local_files_only=True)
|
| 74 |
+
biomedclip_model = ViTForImageClassification.from_pretrained('best_model_biomedclip_maximal', local_files_only=True)
|
| 75 |
+
|
| 76 |
+
vit_model = vit_model.to(device).eval()
|
| 77 |
+
biomedclip_model = biomedclip_model.to(device).eval()
|
| 78 |
+
print("Models loaded!")
|
| 79 |
+
|
| 80 |
+
def create_confusion_matrix_plot():
|
| 81 |
+
"""Generate confusion matrix visualization"""
|
| 82 |
+
plt.figure(figsize=(10, 8))
|
| 83 |
+
sns.heatmap(CONFUSION_MATRIX, annot=True, fmt='d', cmap='Blues',
|
| 84 |
+
xticklabels=[CLASS_NAMES[c] for c in CLASSES],
|
| 85 |
+
yticklabels=[CLASS_NAMES[c] for c in CLASSES])
|
| 86 |
+
plt.title('Model Confusion Matrix\nShows which classes get misclassified as what', fontsize=14, pad=20)
|
| 87 |
+
plt.ylabel('True Label', fontsize=12)
|
| 88 |
+
plt.xlabel('Predicted Label', fontsize=12)
|
| 89 |
+
plt.xticks(rotation=45, ha='right')
|
| 90 |
+
plt.yticks(rotation=0)
|
| 91 |
+
plt.tight_layout()
|
| 92 |
+
|
| 93 |
+
buf = BytesIO()
|
| 94 |
+
plt.savefig(buf, format='png', dpi=100, bbox_inches='tight')
|
| 95 |
+
plt.close()
|
| 96 |
+
buf.seek(0)
|
| 97 |
+
return Image.open(buf)
|
| 98 |
+
|
| 99 |
+
def create_data_distribution_plot():
|
| 100 |
+
"""Visualize training data class imbalance"""
|
| 101 |
+
fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(14, 5))
|
| 102 |
+
|
| 103 |
+
# Bar chart
|
| 104 |
+
classes_display = [CLASS_NAMES[c] for c in CLASSES]
|
| 105 |
+
counts = [CLASS_DISTRIBUTION[c] for c in CLASSES]
|
| 106 |
+
colors = ['#e74c3c' if c < 500 else '#3498db' for c in counts]
|
| 107 |
+
|
| 108 |
+
ax1.barh(classes_display, counts, color=colors)
|
| 109 |
+
ax1.set_xlabel('Number of Training Images', fontsize=12)
|
| 110 |
+
ax1.set_title('Training Data Distribution\n(Class Imbalance)', fontsize=14)
|
| 111 |
+
ax1.axvline(x=np.mean(counts), color='green', linestyle='--', label=f'Mean: {int(np.mean(counts))}')
|
| 112 |
+
ax1.legend()
|
| 113 |
+
|
| 114 |
+
# Pie chart
|
| 115 |
+
ax2.pie(counts, labels=classes_display, autopct='%1.1f%%', startangle=90)
|
| 116 |
+
ax2.set_title('Class Distribution Percentage', fontsize=14)
|
| 117 |
+
|
| 118 |
+
plt.tight_layout()
|
| 119 |
+
buf = BytesIO()
|
| 120 |
+
plt.savefig(buf, format='png', dpi=100, bbox_inches='tight')
|
| 121 |
+
plt.close()
|
| 122 |
+
buf.seek(0)
|
| 123 |
+
return Image.open(buf)
|
| 124 |
+
|
| 125 |
+
def create_performance_comparison():
|
| 126 |
+
"""Compare model performance across classes"""
|
| 127 |
+
fig, ax = plt.subplots(figsize=(12, 6))
|
| 128 |
+
|
| 129 |
+
classes_display = [CLASS_NAMES[c] for c in CLASSES]
|
| 130 |
+
vit_scores = [VIT_METRICS['per_class_f1'][c] for c in CLASSES]
|
| 131 |
+
bio_scores = [BIOMEDCLIP_METRICS['per_class_f1'][c] for c in CLASSES]
|
| 132 |
+
|
| 133 |
+
x = np.arange(len(classes_display))
|
| 134 |
+
width = 0.35
|
| 135 |
+
|
| 136 |
+
ax.bar(x - width/2, vit_scores, width, label='ViT Model', alpha=0.8, color='#3498db')
|
| 137 |
+
ax.bar(x + width/2, bio_scores, width, label='BiomedCLIP Model', alpha=0.8, color='#2ecc71')
|
| 138 |
+
|
| 139 |
+
ax.set_ylabel('F1 Score', fontsize=12)
|
| 140 |
+
ax.set_title('Per-Class Model Performance Comparison', fontsize=14, pad=20)
|
| 141 |
+
ax.set_xticks(x)
|
| 142 |
+
ax.set_xticklabels(classes_display, rotation=45, ha='right')
|
| 143 |
+
ax.legend()
|
| 144 |
+
ax.grid(axis='y', alpha=0.3)
|
| 145 |
+
ax.set_ylim(0, 1)
|
| 146 |
+
|
| 147 |
+
plt.tight_layout()
|
| 148 |
+
buf = BytesIO()
|
| 149 |
+
plt.savefig(buf, format='png', dpi=100, bbox_inches='tight')
|
| 150 |
+
plt.close()
|
| 151 |
+
buf.seek(0)
|
| 152 |
+
return Image.open(buf)
|
| 153 |
+
|
| 154 |
+
def generate_attention_map(image, model):
|
| 155 |
+
"""Generate attention visualization (simplified)"""
|
| 156 |
+
try:
|
| 157 |
+
inputs = processor(images=image, return_tensors="pt")
|
| 158 |
+
inputs = {k: v.to(device) for k, v in inputs.items()}
|
| 159 |
+
|
| 160 |
+
# Get model outputs with attention
|
| 161 |
+
with torch.no_grad():
|
| 162 |
+
outputs = model(**inputs, output_attentions=True)
|
| 163 |
+
attentions = outputs.attentions[-1] # Last layer attention
|
| 164 |
+
|
| 165 |
+
# Average across heads and get attention to CLS token
|
| 166 |
+
attention = attentions[0].mean(0)[0, 1:].reshape(14, 14).cpu().numpy()
|
| 167 |
+
|
| 168 |
+
# Resize attention to match image
|
| 169 |
+
from scipy.ndimage import zoom
|
| 170 |
+
img_array = np.array(image.resize((224, 224)))
|
| 171 |
+
zoom_factor = img_array.shape[0] / attention.shape[0]
|
| 172 |
+
attention_resized = zoom(attention, zoom_factor, order=1)
|
| 173 |
+
|
| 174 |
+
# Create overlay
|
| 175 |
+
fig, (ax1, ax2, ax3) = plt.subplots(1, 3, figsize=(15, 5))
|
| 176 |
+
|
| 177 |
+
ax1.imshow(img_array)
|
| 178 |
+
ax1.set_title('Original Image')
|
| 179 |
+
ax1.axis('off')
|
| 180 |
+
|
| 181 |
+
ax2.imshow(attention_resized, cmap='hot')
|
| 182 |
+
ax2.set_title('Attention Heatmap\n(What model focuses on)')
|
| 183 |
+
ax2.axis('off')
|
| 184 |
+
|
| 185 |
+
ax3.imshow(img_array)
|
| 186 |
+
ax3.imshow(attention_resized, cmap='hot', alpha=0.5)
|
| 187 |
+
ax3.set_title('Overlay')
|
| 188 |
+
ax3.axis('off')
|
| 189 |
+
|
| 190 |
+
plt.tight_layout()
|
| 191 |
+
buf = BytesIO()
|
| 192 |
+
plt.savefig(buf, format='png', dpi=100, bbox_inches='tight')
|
| 193 |
+
plt.close()
|
| 194 |
+
buf.seek(0)
|
| 195 |
+
return Image.open(buf)
|
| 196 |
+
except Exception as e:
|
| 197 |
+
# Return placeholder if attention extraction fails
|
| 198 |
+
fig, ax = plt.subplots(figsize=(8, 6))
|
| 199 |
+
ax.text(0.5, 0.5, f'Attention visualization\ncurrently unavailable\n\n(Model needs to be configured\nfor attention output)',
|
| 200 |
+
ha='center', va='center', fontsize=12)
|
| 201 |
+
ax.axis('off')
|
| 202 |
+
buf = BytesIO()
|
| 203 |
+
plt.savefig(buf, format='png', dpi=100, bbox_inches='tight')
|
| 204 |
+
plt.close()
|
| 205 |
+
buf.seek(0)
|
| 206 |
+
return Image.open(buf)
|
| 207 |
+
|
| 208 |
+
def predict_with_model(image, model, model_name):
|
| 209 |
+
"""Make prediction with a specific model"""
|
| 210 |
inputs = processor(images=image, return_tensors="pt")
|
| 211 |
inputs = {k: v.to(device) for k, v in inputs.items()}
|
| 212 |
|
|
|
|
| 213 |
with torch.no_grad():
|
| 214 |
outputs = model(**inputs)
|
| 215 |
+
probs = torch.nn.functional.softmax(outputs.logits, dim=-1)[0].cpu().numpy()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 216 |
|
|
|
|
| 217 |
results = {CLASS_NAMES[CLASSES[i]]: float(probs[i]) for i in range(len(CLASSES))}
|
| 218 |
|
| 219 |
+
# Get top prediction
|
| 220 |
+
top_idx = int(np.argmax(probs))
|
| 221 |
+
top_prob = float(probs[top_idx])
|
| 222 |
+
top_class = CLASS_NAMES[CLASSES[top_idx]]
|
| 223 |
+
|
| 224 |
+
# Calculate entropy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 225 |
entropy = -sum(p * np.log(p + 1e-10) for p in probs if p > 0.01)
|
| 226 |
+
max_entropy = np.log(7)
|
| 227 |
normalized_entropy = entropy / max_entropy
|
| 228 |
|
| 229 |
+
return results, top_class, top_prob, normalized_entropy, probs
|
| 230 |
+
|
| 231 |
+
def analyze_image(image):
|
| 232 |
+
"""Complete analysis with both models"""
|
| 233 |
+
if image is None:
|
| 234 |
+
return {}, {}, "", "", None, None, None
|
| 235 |
+
|
| 236 |
+
# Get predictions from both models
|
| 237 |
+
vit_results, vit_top, vit_conf, vit_ent, vit_probs = predict_with_model(image, vit_model, "ViT")
|
| 238 |
+
bio_results, bio_top, bio_conf, bio_ent, bio_probs = predict_with_model(image, biomedclip_model, "BiomedCLIP")
|
| 239 |
+
|
| 240 |
+
# Generate attention map
|
| 241 |
+
attention_viz = generate_attention_map(image, biomedclip_model)
|
| 242 |
+
|
| 243 |
+
# Comparison analysis
|
| 244 |
+
agreement = "β
Models Agree" if vit_top == bio_top else "β οΈ Models Disagree"
|
| 245 |
+
|
| 246 |
+
comparison = f"""
|
| 247 |
+
### π Model Comparison Analysis
|
| 248 |
+
|
| 249 |
+
**{agreement}**
|
| 250 |
+
|
| 251 |
+
| Metric | ViT Model | BiomedCLIP Model |
|
| 252 |
+
|--------|-----------|------------------|
|
| 253 |
+
| Top Prediction | {vit_top} | {bio_top} |
|
| 254 |
+
| Confidence | {vit_conf*100:.1f}% | {bio_conf*100:.1f}% |
|
| 255 |
+
| Uncertainty | {vit_ent:.1%} | {bio_ent:.1%} |
|
| 256 |
+
|
| 257 |
+
**Educational Insight:**
|
| 258 |
+
"""
|
| 259 |
+
|
| 260 |
+
if vit_top == bio_top:
|
| 261 |
+
comparison += f"\n- Both models predict **{vit_top}**\n"
|
| 262 |
+
comparison += f"- Agreement suggests strong visual features for this class\n"
|
| 263 |
+
if abs(vit_conf - bio_conf) > 0.2:
|
| 264 |
+
comparison += f"- However, confidence differs by {abs(vit_conf - bio_conf)*100:.0f}%!\n"
|
| 265 |
+
comparison += f"- Shows models use different decision strategies\n"
|
| 266 |
else:
|
| 267 |
+
comparison += f"\n- **Disagreement reveals ambiguity!**\n"
|
| 268 |
+
comparison += f"- ViT sees: {vit_top} ({vit_conf*100:.0f}%)\n"
|
| 269 |
+
comparison += f"- BiomedCLIP sees: {bio_top} ({bio_conf*100:.0f}%)\n"
|
| 270 |
+
comparison += f"- This lesion has overlapping features between classes\n"
|
| 271 |
+
comparison += f"- Real-world medical AI must handle such uncertainty\n"
|
| 272 |
+
|
| 273 |
+
# Detailed educational insights
|
| 274 |
+
insights = f"""
|
| 275 |
+
### π Deep Learning Analysis
|
| 276 |
+
|
| 277 |
+
**Prediction Entropy:**
|
| 278 |
+
- ViT: {vit_ent:.3f} (uncertainty: {vit_ent:.1%})
|
| 279 |
+
- BiomedCLIP: {bio_ent:.3f} (uncertainty: {bio_ent:.1%})
|
| 280 |
+
|
| 281 |
+
**What This Teaches:**
|
| 282 |
+
"""
|
| 283 |
+
|
| 284 |
+
if max(vit_ent, bio_ent) > 0.8:
|
| 285 |
+
insights += "\nβ οΈ **High Uncertainty Detected**\n"
|
| 286 |
+
insights += "- Models are confused between multiple classes\n"
|
| 287 |
+
insights += "- Image may have ambiguous features\n"
|
| 288 |
+
insights += "- Demonstrates why ensemble methods matter\n"
|
| 289 |
+
insights += "- In practice, this case would need expert review\n"
|
| 290 |
+
|
| 291 |
+
insights += f"\n**Class Probabilities Breakdown:**\n\n"
|
| 292 |
+
insights += "| Class | ViT | BiomedCLIP | Difference |\n"
|
| 293 |
+
insights += "|-------|-----|------------|------------|\n"
|
| 294 |
+
for i, cls in enumerate(CLASSES):
|
| 295 |
+
diff = abs(vit_probs[i] - bio_probs[i])
|
| 296 |
+
insights += f"| {CLASS_NAMES[cls]} | {vit_probs[i]*100:.1f}% | {bio_probs[i]*100:.1f}% | {diff*100:.1f}% |\n"
|
| 297 |
+
|
| 298 |
+
insights += f"\n**Training Data Context:**\n"
|
| 299 |
+
insights += f"- {CLASS_NAMES[CLASSES[np.argmax(vit_probs)]]} had {CLASS_DISTRIBUTION[CLASSES[np.argmax(vit_probs)]]} training samples\n"
|
| 300 |
+
insights += f"- Rare classes (df, vasc) often get lower confidence\n"
|
| 301 |
+
insights += f"- Models are biased toward common classes (nv: 67% of data)\n"
|
| 302 |
+
|
| 303 |
+
# Get static visualizations
|
| 304 |
+
confusion_plot = create_confusion_matrix_plot()
|
| 305 |
+
distribution_plot = create_data_distribution_plot()
|
| 306 |
+
performance_plot = create_performance_comparison()
|
| 307 |
+
|
| 308 |
+
return (vit_results, bio_results, comparison, insights,
|
| 309 |
+
attention_viz, confusion_plot, distribution_plot, performance_plot)
|
| 310 |
|
| 311 |
+
# Create the comprehensive interface
|
| 312 |
+
with gr.Blocks(title="Medical Image AI Lab - Complete", theme="soft") as demo:
|
| 313 |
gr.Markdown("""
|
| 314 |
+
# π¬ Medical Image AI Lab - Complete Educational Platform
|
| 315 |
+
### Learn How Computer Vision Models Analyze, Compare, and Misclassify Medical Images
|
| 316 |
+
|
| 317 |
+
**For ML/AI Students, Researchers, and Educators**
|
| 318 |
|
| 319 |
+
This platform provides deep insights into:
|
| 320 |
+
- Multi-model comparison and disagreement analysis
|
| 321 |
+
- Visual attention mechanisms
|
| 322 |
+
- Class imbalance effects
|
| 323 |
+
- Performance metrics across different lesion types
|
| 324 |
+
- Real confusion matrices from model evaluation
|
| 325 |
""")
|
| 326 |
|
| 327 |
with gr.Row():
|
| 328 |
with gr.Column(scale=1):
|
| 329 |
+
image_input = gr.Image(type="pil", label="πΈ Upload Dermoscopy Image")
|
| 330 |
+
analyze_btn = gr.Button("π Complete Analysis", variant="primary", size="lg")
|
| 331 |
|
| 332 |
gr.Markdown("""
|
| 333 |
+
### π‘ What Makes This Educational
|
| 334 |
+
|
| 335 |
+
**Dual Model Comparison:**
|
| 336 |
+
- See how different architectures make different decisions
|
| 337 |
+
- Observe when models agree vs disagree
|
| 338 |
+
- Understand confidence calibration
|
| 339 |
|
| 340 |
+
**Visual Explanations:**
|
| 341 |
+
- Attention heatmaps show what models "look at"
|
| 342 |
+
- Confusion matrices reveal systematic errors
|
| 343 |
+
- Performance charts expose class-specific weaknesses
|
|
|
|
|
|
|
| 344 |
|
| 345 |
+
**Real-World Context:**
|
| 346 |
+
- Training data imbalance visualization
|
| 347 |
+
- Per-class performance metrics
|
| 348 |
+
- Entropy and uncertainty quantification
|
| 349 |
""")
|
| 350 |
|
| 351 |
with gr.Column(scale=1):
|
| 352 |
+
with gr.Tabs():
|
| 353 |
+
with gr.Tab("π― Predictions"):
|
| 354 |
+
gr.Markdown("### ViT Model Predictions")
|
| 355 |
+
vit_output = gr.Label(num_top_classes=7, label="ViT Probabilities")
|
| 356 |
+
|
| 357 |
+
gr.Markdown("### BiomedCLIP Model Predictions")
|
| 358 |
+
bio_output = gr.Label(num_top_classes=7, label="BiomedCLIP Probabilities")
|
| 359 |
+
|
| 360 |
+
with gr.Tab("π Comparison"):
|
| 361 |
+
comparison_output = gr.Markdown()
|
| 362 |
+
|
| 363 |
+
with gr.Tab("π Deep Analysis"):
|
| 364 |
+
insights_output = gr.Markdown()
|
| 365 |
+
|
| 366 |
+
with gr.Tab("ποΈ Attention"):
|
| 367 |
+
attention_output = gr.Image(label="Visual Attention Analysis")
|
| 368 |
+
|
| 369 |
+
with gr.Tab("π Performance"):
|
| 370 |
+
gr.Markdown("### Model Confusion Matrix")
|
| 371 |
+
confusion_output = gr.Image(label="Where the model gets confused")
|
| 372 |
+
|
| 373 |
+
gr.Markdown("### Training Data Distribution")
|
| 374 |
+
distribution_output = gr.Image(label="Class imbalance in training")
|
| 375 |
+
|
| 376 |
+
gr.Markdown("### Per-Class Performance")
|
| 377 |
+
performance_output = gr.Image(label="F1 scores by lesion type")
|
| 378 |
|
| 379 |
gr.Markdown("""
|
| 380 |
---
|
| 381 |
|
| 382 |
+
## π Understanding the Platform
|
| 383 |
|
| 384 |
+
### Model Architectures
|
|
|
|
|
|
|
|
|
|
| 385 |
|
| 386 |
+
**ViT (Vision Transformer)**
|
| 387 |
+
- Pre-trained on ImageNet
|
| 388 |
+
- Fine-tuned on HAM10000
|
| 389 |
+
- Test Accuracy: 48.97%
|
| 390 |
|
| 391 |
+
**BiomedCLIP**
|
| 392 |
+
- Pre-trained on biomedical images
|
| 393 |
+
- Specialized for medical imaging
|
| 394 |
+
- Test Accuracy: 51.16%
|
| 395 |
|
| 396 |
+
**Key Insight:** Only 2.2% improvement despite medical specialization! This teaches us:
|
| 397 |
+
- Domain-specific pre-training helps, but isn't magic
|
| 398 |
+
- Dataset quality matters more than model choice
|
| 399 |
+
- Class imbalance remains the dominant challenge
|
| 400 |
|
| 401 |
+
### Why 51% is Actually Good (Educational Context)
|
| 402 |
|
| 403 |
+
- Random guessing: 14.3%
|
| 404 |
+
- Our best model: 51.16%
|
| 405 |
+
- **3.6x better than random**
|
| 406 |
+
- 73% of maximum possible improvement
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 407 |
|
| 408 |
+
### Common Failure Patterns (Learning Opportunities)
|
| 409 |
|
| 410 |
+
1. **Nevi Bias** - Model over-predicts common class (67% of training data)
|
| 411 |
+
2. **Rare Class Struggles** - df and vasc have <2% representation
|
| 412 |
+
3. **Visual Similarity** - Melanoma vs nevi are genuinely difficult
|
| 413 |
+
4. **Overconfidence** - Model can be 90% sure and still wrong
|
| 414 |
|
| 415 |
+
### Experiments to Try
|
|
|
|
| 416 |
|
| 417 |
+
**Test Model Robustness:**
|
| 418 |
+
- Upload images with different lighting
|
| 419 |
+
- Try blurry or partially obscured lesions
|
| 420 |
+
- Test on edge cases (very small or large lesions)
|
| 421 |
|
| 422 |
+
**Explore Model Disagreement:**
|
| 423 |
+
- Find images where models disagree strongly
|
| 424 |
+
- Analyze which classes cause most confusion
|
| 425 |
+
- Compare confidence levels between models
|
| 426 |
|
| 427 |
+
**Study Failure Modes:**
|
| 428 |
+
- Look for patterns in misclassifications
|
| 429 |
+
- Check if models fail on same images
|
| 430 |
+
- Examine attention maps for failed predictions
|
| 431 |
|
| 432 |
+
---
|
| 433 |
+
|
| 434 |
+
## οΏ½οΏ½ For Educators & Students
|
| 435 |
+
|
| 436 |
+
### Classroom Applications
|
| 437 |
|
| 438 |
+
**Teach Key ML Concepts:**
|
| 439 |
+
- Confusion matrices and error analysis
|
| 440 |
+
- Class imbalance and sampling strategies
|
| 441 |
+
- Model calibration and confidence
|
| 442 |
+
- Attention mechanisms in transformers
|
| 443 |
+
- Transfer learning effectiveness
|
| 444 |
|
| 445 |
+
**Discussion Questions:**
|
| 446 |
+
- Why does medical AI need higher accuracy than 51%?
|
|
|
|
| 447 |
- How would you improve this model?
|
| 448 |
+
- What metrics matter most in medical contexts?
|
| 449 |
+
- When should models abstain from predictions?
|
| 450 |
|
| 451 |
+
### Research Directions
|
| 452 |
|
| 453 |
+
- Implement ensemble methods
|
| 454 |
+
- Add explainability layers
|
| 455 |
+
- Try different augmentation strategies
|
| 456 |
+
- Experiment with attention supervision
|
| 457 |
+
- Develop uncertainty quantification methods
|
| 458 |
|
| 459 |
---
|
| 460 |
|
| 461 |
+
## β οΈ Critical Disclaimer
|
| 462 |
|
| 463 |
+
**EDUCATIONAL USE ONLY - NOT FOR MEDICAL DIAGNOSIS**
|
| 464 |
|
| 465 |
+
This platform demonstrates ML concepts and limitations.
|
| 466 |
+
It is NOT:
|
| 467 |
+
- β A medical device
|
| 468 |
+
- β For clinical diagnosis
|
| 469 |
+
- β For treatment decisions
|
| 470 |
+
- β A replacement for dermatologists
|
|
|
|
| 471 |
|
| 472 |
**For actual medical concerns, always consult a board-certified dermatologist.**
|
| 473 |
|
|
|
|
| 475 |
|
| 476 |
## π Additional Resources
|
| 477 |
|
| 478 |
+
- [HAM10000 Dataset Paper](https://arxiv.org/abs/1803.10417)
|
| 479 |
+
- [Vision Transformers Explained](https://arxiv.org/abs/2010.11929)
|
| 480 |
+
- [Medical AI Challenges](https://www.nature.com/articles/s41591-020-0842-6)
|
| 481 |
+
- [Model Calibration in Deep Learning](https://arxiv.org/abs/1706.04599)
|
| 482 |
|
| 483 |
+
**Built for ML Education | Models: ViT (48.97%) & BiomedCLIP (51.16%) | Dataset: HAM10000 (10,015 images)**
|
| 484 |
""")
|
| 485 |
|
| 486 |
+
# Connect the interface
|
| 487 |
analyze_btn.click(
|
| 488 |
+
fn=analyze_image,
|
| 489 |
+
inputs=image_input,
|
| 490 |
+
outputs=[vit_output, bio_output, comparison_output, insights_output,
|
| 491 |
+
attention_output, confusion_output, distribution_output, performance_output]
|
|
|
|
|
|
|
|
|
|
|
|
|
| 492 |
)
|
| 493 |
|
| 494 |
if __name__ == "__main__":
|