Update README.md
Browse files
README.md
CHANGED
|
@@ -1,10 +1,29 @@
|
|
| 1 |
---
|
| 2 |
title: README
|
| 3 |
-
emoji:
|
| 4 |
-
colorFrom:
|
| 5 |
-
colorTo:
|
| 6 |
sdk: static
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
title: README
|
| 3 |
+
emoji: 🐠
|
| 4 |
+
colorFrom: pink
|
| 5 |
+
colorTo: purple
|
| 6 |
sdk: static
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
+
# OTAR3088 NLP-model organisation
|
| 11 |
+
|
| 12 |
+
## Work Package 1 - Knowledge Extraction (NLP)
|
| 13 |
+
|
| 14 |
+
_**Background**_
|
| 15 |
+
|
| 16 |
+
Within this working group of the greater _OTAR3088, 'Automating Knowledge Management'_ project, we aim to modernise and extend the current named entity recognition workflows of EuropePMC / Open Targets to cover an array of entity types of entities relevant to drug discovery (such as variants, biomarkers, tissues/cell types, adverse events, and assay conditions). These new entities will provide higher confidence in the relevance of a target-disease association.
|
| 17 |
+
|
| 18 |
+
Since NLP models are constantly updated and fine-tuned, we have created a modular, flexible framework that facilitates the creation of new NLP models.
|
| 19 |
+
|
| 20 |
+
_**OTAR3088 HuggingFace**_
|
| 21 |
+
|
| 22 |
+
This organisation space details all of the data development and model generation of the project. Data is sectioned by the greater entity-type being studied by the group at a given time, sources of data are described in the data cards. Output models are also shared here.
|
| 23 |
+
|
| 24 |
+
|
| 25 |
+
_**Learn more about our project, resources and others:**_
|
| 26 |
+
|
| 27 |
+
* [OTAR3088 - The project](https://aws.amazon.com/ec2/instance-types/g4/?trk=5767130d-03c1-443e-908e-5202162d30d3&sc_channel=el)
|
| 28 |
+
* [Our flexible NLP-model production pipeline](https://github.com/ML4LitS/OTAR3088)
|
| 29 |
+
* [Helpful wider-context reading](https://www.tandfonline.com/doi/full/10.1080/17460441.2025.2490835)
|