Update app.py

app.py

@@ -3,6 +3,7 @@ import gradio as gr
 from rdkit import Chem
 from rdkit.Chem import Draw
 import os
+import time
 
 def remove_atom_mapping_and_isotopes(smiles):
     mol = Chem.MolFromSmiles(smiles)
@@ -119,13 +120,15 @@ def retrosynthesis(reactant, prompt):
 
     return reactseq_list, reactants, reactant_images
 
-def secondary_interface(smiles, atom1_idx, atom2_idx, operation):
+prompt_output = gr.Textbox(label="Prompt", interactive=False, visible=True)  # 确保visible=True
+
+def secondary_interface(smiles, atom1_idx, atom2_idx, operation, progress=gr.Progress()):
     try:
         prompt, error = process_bond_operation(smiles, atom1_idx, atom2_idx, operation)
         
         if prompt:
             reactseq_list, reactant_smiles, reactant_images = retrosynthesis(smiles, prompt)
-            output_components = [gr.update(value=prompt, visible=True)]  # prompt_output
+            output_components = [gr.update(value=prompt)]  # prompt_output
 
             # Add the reactant SMILES and images
             for i in range(len(reactant_smiles)):
@@ -143,11 +146,12 @@ def secondary_interface(smiles, atom1_idx, atom2_idx, operation):
             return output_components
         
         else:
-            return [gr.update(visible=False)] * 31 + [error]  # Assuming 10 pairs of outputs + prompt_output + error_output
+            return [gr.update(visible=False)] * 31 + [error]
     
     except Exception as e:
         return [gr.update(visible=False)] * 31 + [gr.update(visible=True, value=str(e))]
 
+
 def clear_interface():
     return (
         gr.update(value=None),  # img_output
@@ -155,7 +159,7 @@ def clear_interface():
         gr.update(visible=False),  # secondary_inputs
         gr.update(visible=False),  # secondary_inputs
         gr.update(visible=False, value=None),  # error_output
-        gr.update(value=None, visible=False),  # prompt_output
+        gr.update(value=None, visible=True),  # prompt_output
     ) + (  # Reactant SMILES and Images
         tuple(gr.update(value=None, visible=False) for _ in range(30))
     )