Dockerfile

FROM python:3.12
WORKDIR /app
COPY requirements.txt .
RUN mkdir -p /tmp/numba_cache && chmod -R 777 /tmp/numba_cache
ENV NUMBA_CACHE_DIR=/tmp/numba_cache
RUN pip install --no-cache-dir -r requirements.txt
COPY scanpy_mcp.py .
COPY tools/ tools/
RUN mkdir -p /app/data/upload /data/tmp_inputs /data/tmp_outputs && chmod -R 777 /app/data/upload /data
EXPOSE 7860
CMD ["uvicorn", "scanpy_mcp:app", "--host", "0.0.0.0", "--port", "7860"]