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901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 | import asyncio
import io
import json
import logging
import os
import random
import sys
import time
import uuid
from collections import deque
from datetime import datetime, timezone
from pathlib import Path
from typing import Any
import gradio as gr
import httpx
import numpy as np
from fastapi import (
BackgroundTasks,
FastAPI,
File,
HTTPException,
Request,
Response,
UploadFile,
)
from fastapi.middleware.cors import CORSMiddleware
from fastapi.responses import PlainTextResponse
from PIL import Image
from prometheus_client import CONTENT_TYPE_LATEST, Counter, Histogram, generate_latest
from scipy.stats import ks_2samp
import matplotlib.cm as cm
import base64
# Heavy ML deps are optional β not installed on the Railway proxy node.
try:
import torch
import onnxruntime as ort
from torchvision import transforms
from torchvision.models import mobilenet_v3_small, efficientnet_b0
from model_utils import CalibratedModel
_TORCH_AVAILABLE = True
except ImportError:
_TORCH_AVAILABLE = False
BASE_DIR = Path(__file__).resolve().parents[1]
LEGACY_MODEL_DIR = BASE_DIR / "models"
REALWORLD_MODEL_DIR = BASE_DIR / "models" / "realworld_efficientnet_b0"
CHESTMNIST_MODEL_DIR = BASE_DIR / "models" / "chestmnist_mobilenetv3"
PROFILE = os.getenv("PNEUMOOPS_PROFILE", "chestmnist").lower()
_DEFAULT_MODEL_DIR = {
"realworld": REALWORLD_MODEL_DIR,
"chestmnist": CHESTMNIST_MODEL_DIR,
}.get(PROFILE, LEGACY_MODEL_DIR)
MODEL_DIR = Path(os.getenv("PNEUMOOPS_MODEL_DIR", str(_DEFAULT_MODEL_DIR)))
REQUEST_LOG_HISTORY = deque(maxlen=20)
API_KEY = os.getenv("PNEUMOOPS_API_KEY")
ALLOWED_ORIGINS = [
origin.strip()
for origin in os.getenv("PNEUMOOPS_ALLOWED_ORIGINS", "*").split(",")
if origin.strip()
]
TRAFFIC_WEIGHTS = {"pytorch": 60, "onnx": 40}
# When set, all model inference is forwarded to this HF Spaces URL instead of local models.
# Example: https://prakhar54-byte-pneumoops.hf.space
HF_SPACES_URL = os.getenv("HF_SPACES_URL", "").rstrip("/")
COLLECT_DATA = os.getenv("PNEUMOOPS_COLLECT_DATA", "true").lower() == "true"
COLLECT_DIR = BASE_DIR / "data" / "collected_images"
LOW_CONFIDENCE_THRESHOLD = float(
os.getenv("PNEUMOOPS_LOW_CONFIDENCE_THRESHOLD", "0.60")
)
MIN_UPLOAD_EDGE = int(os.getenv("PNEUMOOPS_MIN_UPLOAD_EDGE", "96"))
MAX_CHANNEL_DELTA = float(os.getenv("PNEUMOOPS_MAX_CHANNEL_DELTA", "0.08"))
MIN_ASPECT_RATIO = float(os.getenv("PNEUMOOPS_MIN_ASPECT_RATIO", "0.6"))
MAX_ASPECT_RATIO = float(os.getenv("PNEUMOOPS_MAX_ASPECT_RATIO", "1.6"))
REQUEST_COUNTER = Counter(
"pneumoops_requests_total",
"Total inference requests served by PneumoOps.",
["model", "status"],
)
LATENCY_HISTOGRAM = Histogram(
"pneumoops_inference_latency_ms",
"Inference latency per model in milliseconds.",
["model"],
buckets=(5, 10, 25, 50, 100, 250, 500, 1000),
)
DRIFT_COUNTER = Counter(
"pneumoops_drift_alerts_total",
"Number of drift alerts emitted by PneumoOps.",
["status"],
)
DISEASE_PREDICTION_COUNTER = Counter(
"pneumoops_disease_predictions_total",
"Per-disease prediction counts for production monitoring.",
["disease", "model"],
)
logger = logging.getLogger("pneumoops")
if not logger.handlers:
logging.basicConfig(level=logging.INFO, format="%(message)s")
def resolve_path(candidates: list[Path]) -> Path | None:
for candidate in candidates:
if candidate.exists():
return candidate
return None
def load_json(path: Path | None, fallback: dict | None = None) -> dict:
fallback_dict = {} if fallback is None else fallback
if path and path.exists():
try:
return json.loads(path.read_text(encoding="utf-8"))
except json.JSONDecodeError:
logger.warning(f"Failed to parse JSON file {path}, using fallback.")
return fallback_dict
return fallback_dict
def resolve_runtime_paths(model_dir: Path) -> dict[str, Path | None]:
checkpoint_path = resolve_path(
[
model_dir / "mobilenetv3_chestmnist.pth", # chestmnist profile
model_dir / "realworld_efficientnet_b0.pth",
model_dir / "pneumo_model.pth",
]
)
onnx_report_path = resolve_path(
[
model_dir / "onnx_export_report.json",
LEGACY_MODEL_DIR / "onnx_export_report.json",
]
)
onnx_report = load_json(onnx_report_path)
base_onnx = onnx_report.get("base_onnx")
optimized_onnx = onnx_report.get("optimized_onnx")
serving_onnx = onnx_report.get("serving_onnx")
onnx_candidates = []
if serving_onnx:
onnx_candidates.append(model_dir / serving_onnx)
if optimized_onnx:
onnx_candidates.append(model_dir / optimized_onnx)
if base_onnx:
onnx_candidates.append(model_dir / base_onnx)
onnx_candidates.extend(
[
# chestmnist profile
model_dir / "mobilenetv3_chestmnist.onnx",
# realworld profile
model_dir / "realworld_efficientnet_b0_quantized.onnx",
model_dir / "realworld_efficientnet_b0_optimized.onnx",
model_dir / "realworld_efficientnet_b0.onnx",
model_dir / "pneumo_model_quantized.onnx",
model_dir / "pneumo_model_optimized.onnx",
model_dir / "pneumo_model.onnx",
]
)
return {
"checkpoint": checkpoint_path,
"onnx": resolve_path(onnx_candidates),
"training_metrics": resolve_path(
[
model_dir / "training_metrics.json",
LEGACY_MODEL_DIR / "training_metrics.json",
]
),
"baseline_stats": resolve_path(
[
model_dir / "baseline_stats.json",
LEGACY_MODEL_DIR / "baseline_stats.json",
]
),
"onnx_export_report": onnx_report_path,
}
def download_models_if_missing() -> None:
"""Download model weights from HF Hub at startup if not present locally.
Only runs on the HF Spaces inference node (HF_SPACES_URL not set)."""
if HF_SPACES_URL:
return # proxy node β no local models needed
try:
from huggingface_hub import hf_hub_download
except ImportError:
return
hf_model_repo = os.getenv("HF_MODEL_REPO", "Prakhar54-byte/pneumoops-chestmnist")
hf_token = os.getenv("HF_TOKEN")
files = ["mobilenetv3_chestmnist.pth", "mobilenetv3_chestmnist.onnx"]
MODEL_DIR.mkdir(parents=True, exist_ok=True)
for filename in files:
dest = MODEL_DIR / filename
if dest.exists():
continue
try:
logger.info(f"Downloading {filename} from {hf_model_repo}...")
hf_hub_download(
repo_id=hf_model_repo,
filename=filename,
local_dir=str(MODEL_DIR),
token=hf_token,
)
logger.info(f"Downloaded {filename} successfully.")
except Exception as exc:
logger.warning(f"Could not download {filename}: {exc}")
download_models_if_missing()
RUNTIME_PATHS = resolve_runtime_paths(MODEL_DIR)
def load_checkpoint_metadata(checkpoint_path: Path | None) -> dict[str, Any]:
if checkpoint_path is None or not checkpoint_path.exists():
# Proxy/backend-only deployments have no model weights but do have
# training_metrics.json β use it so class names and thresholds are correct.
tm_path = MODEL_DIR / "training_metrics.json"
tm = load_json(tm_path)
if tm.get("class_names"):
class_names = tm["class_names"]
n = len(class_names)
return {
"architecture": tm.get("architecture", "mobilenet_v3_small"),
"class_names": class_names,
"image_size": int(tm.get("image_size", 224)),
"normalize_mean": [0.5, 0.5, 0.5],
"normalize_std": [0.5, 0.5, 0.5],
"thresholds": tm.get("thresholds", [0.5] * n),
"logit_temperature": 1.0,
"multi_label": bool(tm.get("multi_label", True)),
}
return {
"architecture": "mobilenet_v3_small",
"class_names": ["Normal", "Pneumonia"],
"image_size": 224,
"normalize_mean": [0.485, 0.456, 0.406],
"normalize_std": [0.229, 0.224, 0.225],
"thresholds": [0.5, 0.5],
"logit_temperature": 1.0,
"multi_label": False,
}
# If torch is not available, fall back to loading metadata from training_metrics.json
if not _TORCH_AVAILABLE:
tm_path = MODEL_DIR / "training_metrics.json"
tm = load_json(tm_path)
class_names = tm.get("class_names", ["Normal", "Pneumonia"])
n = len(class_names)
return {
"architecture": tm.get("architecture", "mobilenet_v3_small"),
"class_names": class_names,
"image_size": int(tm.get("image_size", 224)),
"normalize_mean": [0.485, 0.456, 0.406],
"normalize_std": [0.229, 0.224, 0.225],
"thresholds": tm.get("thresholds", [0.5] * n),
"logit_temperature": 1.0,
"multi_label": bool(tm.get("multi_label", True)),
}
payload = torch.load(checkpoint_path, map_location="cpu")
if isinstance(payload, dict) and "model_state_dict" in payload:
return {
"state_dict": payload["model_state_dict"],
"architecture": payload.get("architecture", "efficientnet_b0"),
"class_names": payload.get("class_names", ["No Finding"]),
"image_size": int(payload.get("image_size", 320)),
"normalize_mean": payload.get("normalize_mean", [0.485, 0.456, 0.406]),
"normalize_std": payload.get("normalize_std", [0.229, 0.224, 0.225]),
"thresholds": payload.get(
"thresholds", [0.5] * len(payload.get("class_names", ["No Finding"]))
),
"logit_temperature": float(payload.get("logit_temperature", 1.0)),
"multi_label": bool(payload.get("multi_label", True)),
}
# Plain state_dict (e.g. from train_chestmnist.py) β pull metadata from training_metrics.json
tm_path = MODEL_DIR / "training_metrics.json"
tm = load_json(tm_path)
class_names = tm.get("class_names", ["Normal", "Pneumonia"])
n = len(class_names)
return {
"state_dict": payload,
"architecture": tm.get("architecture", "mobilenet_v3_small"),
"class_names": class_names,
"image_size": int(tm.get("image_size", 224)),
"normalize_mean": [0.5, 0.5, 0.5],
"normalize_std": [0.5, 0.5, 0.5],
"thresholds": tm.get("thresholds", [0.5] * n),
"logit_temperature": 1.0,
"multi_label": bool(tm.get("multi_label", True)),
}
MODEL_METADATA = load_checkpoint_metadata(RUNTIME_PATHS["checkpoint"])
CLASS_NAMES = MODEL_METADATA["class_names"]
MULTI_LABEL = bool(MODEL_METADATA["multi_label"])
IMAGE_SIZE = int(MODEL_METADATA["image_size"])
THRESHOLDS = np.asarray(MODEL_METADATA["thresholds"], dtype=np.float32)
LOGIT_TEMPERATURE = float(MODEL_METADATA.get("logit_temperature", 1.0))
TRANSFORM = (
transforms.Compose(
[
transforms.Resize((IMAGE_SIZE, IMAGE_SIZE)),
transforms.Grayscale(num_output_channels=3),
transforms.ToTensor(),
transforms.Normalize(
mean=MODEL_METADATA["normalize_mean"],
std=MODEL_METADATA["normalize_std"],
),
]
)
if _TORCH_AVAILABLE
else None
)
BASELINE_STATS = load_json(
RUNTIME_PATHS["baseline_stats"],
fallback={
"pixel_mean_mean": 0.5,
"pixel_mean_std": 0.1,
"pixel_std_mean": 0.2,
"pixel_std_std": 0.05,
"histogram_bins": 32,
"histogram_mean": [1.0 / 32.0] * 32,
"pixel_reference_sample": [],
"drift_threshold": 1.2,
"drift_ks_pvalue_threshold": 0.05,
"class_names": CLASS_NAMES,
},
)
def build_model() -> Any:
checkpoint_path = RUNTIME_PATHS["checkpoint"]
if checkpoint_path is None or not checkpoint_path.exists():
return None
architecture = MODEL_METADATA["architecture"]
num_outputs = len(CLASS_NAMES)
if architecture == "efficientnet_b0":
base_model = efficientnet_b0(weights=None)
base_model.classifier[1] = torch.nn.Linear(
base_model.classifier[1].in_features, num_outputs
)
else:
base_model = mobilenet_v3_small(weights=None)
base_model.classifier[3] = torch.nn.Linear(
base_model.classifier[3].in_features, num_outputs
)
base_model.load_state_dict(MODEL_METADATA["state_dict"])
model = CalibratedModel(base_model, LOGIT_TEMPERATURE)
model.to(torch.device("cuda" if torch.cuda.is_available() else "cpu"))
model.eval()
return model
def build_onnx_session():
onnx_path = RUNTIME_PATHS["onnx"]
if onnx_path is None or not onnx_path.exists():
return None, None
session = ort.InferenceSession(str(onnx_path), providers=["CPUExecutionProvider"])
return session, onnx_path.name
DEVICE = (
torch.device("cuda" if torch.cuda.is_available() else "cpu")
if _TORCH_AVAILABLE
else None
)
PYTORCH_MODEL = build_model() if _TORCH_AVAILABLE else None
ONNX_SESSION, ACTIVE_ONNX_MODEL_NAME = (
build_onnx_session() if _TORCH_AVAILABLE else (None, None)
)
app = FastAPI(
title="PneumoOps API",
description="Production-style MLOps pipeline for medical image classification with A/B routing and drift monitoring.",
)
app.add_middleware(
CORSMiddleware,
allow_origins=ALLOWED_ORIGINS,
allow_credentials=True,
allow_methods=["*"],
allow_headers=["*"],
)
@app.middleware("http")
async def auth_middleware(request: Request, call_next):
if API_KEY and request.url.path not in {"/health", "/metrics", "/"}:
provided = request.headers.get("x-api-key")
if provided != API_KEY:
return Response(content="Unauthorized", status_code=401)
return await call_next(request)
def load_image_from_upload(upload: UploadFile) -> Image.Image:
try:
content = upload.file.read()
return Image.open(io.BytesIO(content)).convert("RGB")
except Exception as exc:
raise HTTPException(
status_code=400, detail="Uploaded file is not a valid image."
) from exc
def summarize_image(image: Image.Image) -> dict[str, Any]:
gray = np.asarray(image.convert("L"), dtype=np.float32) / 255.0
width, height = image.size
rgb = np.asarray(image.convert("RGB"), dtype=np.float32) / 255.0
channel_delta = (
float(
np.mean(np.abs(rgb[:, :, 0] - rgb[:, :, 1]))
+ np.mean(np.abs(rgb[:, :, 1] - rgb[:, :, 2]))
+ np.mean(np.abs(rgb[:, :, 0] - rgb[:, :, 2]))
)
/ 3.0
)
return {
"width": width,
"height": height,
"aspect_ratio": round(width / max(height, 1), 4),
"pixel_mean": round(float(np.mean(gray)), 6),
"pixel_std": round(float(np.std(gray)), 6),
"pixel_min": round(float(np.min(gray)), 6),
"pixel_max": round(float(np.max(gray)), 6),
"channel_delta": round(channel_delta, 6),
}
def validate_image(image: Image.Image, summary: dict[str, Any]) -> None:
if min(summary["width"], summary["height"]) < MIN_UPLOAD_EDGE:
raise HTTPException(
status_code=400,
detail=f"Input is too small for robust X-ray screening. Minimum edge is {MIN_UPLOAD_EDGE}px.",
)
if not (MIN_ASPECT_RATIO <= summary["aspect_ratio"] <= MAX_ASPECT_RATIO):
raise HTTPException(
status_code=400,
detail="Input aspect ratio is outside the expected chest X-ray range.",
)
if summary["channel_delta"] > MAX_CHANNEL_DELTA:
raise HTTPException(
status_code=400,
detail="Input appears to be a color image instead of a grayscale-style radiograph.",
)
def calculate_drift(image: Image.Image) -> dict[str, Any]:
gray = np.asarray(image.convert("L"), dtype=np.float32) / 255.0
image_mean = float(np.mean(gray))
image_std = float(np.std(gray))
hist_bins = int(BASELINE_STATS.get("histogram_bins", 32))
hist, _ = np.histogram(gray, bins=hist_bins, range=(0.0, 1.0), density=True)
baseline_hist = np.asarray(
BASELINE_STATS.get("histogram_mean", [1.0 / hist_bins] * hist_bins),
dtype=np.float32,
)
mean_z = abs(image_mean - BASELINE_STATS.get("pixel_mean_mean", 0.5)) / max(
BASELINE_STATS.get("pixel_mean_std", 0.1), 1e-6
)
std_z = abs(image_std - BASELINE_STATS.get("pixel_std_mean", 0.2)) / max(
BASELINE_STATS.get("pixel_std_std", 0.05), 1e-6
)
hist_distance = float(np.mean(np.abs(hist - baseline_hist)))
drift_score = round(0.35 * mean_z + 0.35 * std_z + 0.30 * hist_distance, 6)
reference_sample = np.asarray(
BASELINE_STATS.get("pixel_reference_sample", []), dtype=np.float32
)
incoming_sample = gray.reshape(-1)
if reference_sample.size > 0:
sample_size = min(len(incoming_sample), len(reference_sample), 4096)
incoming_idx = np.random.choice(
len(incoming_sample), size=sample_size, replace=False
)
reference_idx = np.random.choice(
len(reference_sample), size=sample_size, replace=False
)
_, ks_pvalue = ks_2samp(
incoming_sample[incoming_idx], reference_sample[reference_idx]
)
ks_pvalue = float(ks_pvalue)
else:
ks_pvalue = 1.0
drift_detected = ks_pvalue < float(
BASELINE_STATS.get("drift_ks_pvalue_threshold", 0.05)
) or drift_score > float(BASELINE_STATS.get("drift_threshold", 1.2))
return {
"drift_alert": "DRIFT_DETECTED" if drift_detected else "NORMAL",
"drift_score": drift_score,
"ks_pvalue": round(ks_pvalue, 6),
"mean_z": round(float(mean_z), 6),
"std_z": round(float(std_z), 6),
"histogram_distance": round(hist_distance, 6),
}
def postprocess_probabilities(probabilities: np.ndarray) -> dict[str, Any]:
probabilities = probabilities.astype(np.float32)
if MULTI_LABEL:
predicted_indices = [
index
for index, value in enumerate(probabilities)
if value >= THRESHOLDS[index]
]
if not predicted_indices:
predicted_indices = [int(np.argmax(probabilities))]
predicted_labels = [CLASS_NAMES[index] for index in predicted_indices]
else:
predicted_index = int(np.argmax(probabilities))
predicted_indices = [predicted_index]
predicted_labels = [CLASS_NAMES[predicted_index]]
all_predictions = [
{
"label": CLASS_NAMES[index],
"confidence": round(float(probabilities[index]) * 100, 2),
"threshold": round(float(THRESHOLDS[index]) * 100, 2)
if index < len(THRESHOLDS)
else 50.0,
"detected": index in predicted_indices,
}
for index in range(len(CLASS_NAMES))
]
sorted_pairs = sorted(
all_predictions, key=lambda item: item["confidence"], reverse=True
)
top_confidence = sorted_pairs[0]["confidence"] if sorted_pairs else 0.0
return {
"predicted_labels": predicted_labels,
"all_predictions": all_predictions, "summary": "Clinical Review Recommended: No findings reached the 30% threshold, but observation is advised for top results.",
"top_predictions": sorted_pairs[: min(5, len(sorted_pairs))],
"max_confidence": top_confidence,
"low_confidence": top_confidence < (LOW_CONFIDENCE_THRESHOLD * 100.0),
"inconclusive_scan": top_confidence < 10.0,
}
class CAMHook:
"""Hook to capture gradients and activations for Grad-CAM."""
def __init__(self, module):
self.hook_f = module.register_forward_hook(self.hook_fn_fwd)
# Score-CAM only needs forward hooks
self.features = None
def hook_fn_fwd(self, module, input, output):
self.features = output.detach()
def remove(self):
self.hook_f.remove()
def generate_cam_overlay(image: Image.Image, cam_tensor: torch.Tensor) -> str:
try:
cam = cam_tensor.detach().cpu().numpy()
cam = np.maximum(cam, 0)
cam = (cam - np.min(cam)) / (np.max(cam) - np.min(cam) + 1e-12)
w, h = image.size
cam_img = Image.fromarray(np.uint8(255 * cam)).resize((w, h), Image.Resampling.LANCZOS)
colormap = cm.get_cmap('jet')(np.array(cam_img) / 255.0)[:, :, :3]
heatmap = np.uint8(255 * colormap)
overlay = np.uint8(0.5 * np.array(image.convert('RGB')) + 0.5 * heatmap)
buf = io.BytesIO()
Image.fromarray(overlay).save(buf, format='PNG')
return base64.b64encode(buf.getvalue()).decode('utf-8')
except Exception as e:
buf = io.BytesIO()
image.save(buf, format='PNG')
return base64.b64encode(buf.getvalue()).decode('utf-8')
def run_pytorch_inference(image: Image.Image) -> dict[str, Any]:
if PYTORCH_MODEL is None:
raise RuntimeError("PyTorch checkpoint is missing.")
tensor = TRANSFORM(image).unsqueeze(0).to(DEVICE)
tensor.requires_grad_(True)
target_layer = None
if hasattr(PYTORCH_MODEL.base_model, "features"):
features = PYTORCH_MODEL.base_model.features
def find_last_conv(m):
last_conv = None
for name, module in m.named_modules():
if isinstance(module, torch.nn.Conv2d):
last_conv = module
return last_conv
target_layer = find_last_conv(features)
if target_layer is None:
target_layer = features[-1]
logger.info(f"Using features[-1] as fallback target layer: {type(target_layer).__name__}")
else:
logger.info(f"Found deep Conv2d target layer: {type(target_layer).__name__}")
else:
logger.warning("No features attribute found on model for CAM")
cam_hook = None
if target_layer is not None:
try:
cam_hook = CAMHook(target_layer)
logger.info(f"CAM hook registered on {type(target_layer).__name__}")
except Exception as e:
logger.error(f"Failed to register CAM hook: {e}")
else:
logger.warning("No target layer found for CAM")
if torch.cuda.is_available():
torch.cuda.synchronize()
start = time.perf_counter()
with torch.set_grad_enabled(True):
logits = PYTORCH_MODEL(tensor)
probs_tensor = (torch.sigmoid(logits).squeeze(0) if MULTI_LABEL else torch.softmax(logits, dim=1).squeeze(0))
probabilities = probs_tensor.detach().cpu().numpy()
class_idx = int(np.argmax(probabilities))
cam_b64 = None
if cam_hook:
try:
logger.info(f"Computing CAM for class index {class_idx}")
PYTORCH_MODEL.zero_grad()
# SCORE-CAM Implementation
with torch.no_grad():
activations = cam_hook.features[0] # [C, H, W]
num_channels = activations.shape[0]
# Upsample activations to match model input (224x224)
upsampled = torch.nn.functional.interpolate(
activations.unsqueeze(0), size=(224, 224), mode='bilinear', align_corners=False
).squeeze(0) # [C, 224, 224]
# Normalize masks
upsampled = (upsampled - upsampled.min()) / (upsampled.max() - upsampled.min() + 1e-8)
# Batch process masked images to get scores
# We use a representative subset of channels if there are too many (e.g. 576) to keep latency low
# For MobileNetV3 small, we'll take top 128 channels or all if less
step = max(1, num_channels // 128)
subset_indices = list(range(0, num_channels, step))
masked_images = tensor * upsampled[subset_indices].unsqueeze(1) # [N, 3, 224, 224]
# Get scores for the target class
scores = PYTORCH_MODEL(masked_images)[:, class_idx]
scores = torch.nn.functional.softmax(scores, dim=0)
# Weighted sum of activations
cam_tensor = torch.sum(activations[subset_indices] * scores.view(-1, 1, 1), dim=0)
cam_b64 = generate_cam_overlay(image, cam_tensor)
logger.info("CAM overlay generated successfully")
except Exception as e:
logger.error(f"CAM computation failed: {e}")
finally:
cam_hook.remove()
if torch.cuda.is_available():
torch.cuda.synchronize()
latency_ms = round((time.perf_counter() - start) * 1000, 2)
return {
"model_key": "pytorch",
"model_used": "Baseline PyTorch",
"latency_ms": latency_ms,
"probabilities": probabilities.tolist(),
"cam_b64": cam_b64,
**postprocess_probabilities(probabilities),
}
def run_onnx_inference(image: Image.Image) -> dict[str, Any]:
if ONNX_SESSION is None:
raise RuntimeError("ONNX artifact is missing.")
tensor = TRANSFORM(image).unsqueeze(0).numpy().astype(np.float32)
input_name = ONNX_SESSION.get_inputs()[0].name
start = time.perf_counter()
outputs = ONNX_SESSION.run(None, {input_name: tensor})
latency_ms = round((time.perf_counter() - start) * 1000, 2)
logits = torch.from_numpy(outputs[0]).squeeze(0)
probabilities = (
torch.sigmoid(logits).numpy()
if MULTI_LABEL
else torch.softmax(logits, dim=0).numpy()
)
return {
"model_key": "onnx",
"model_used": "Optimized ONNX",
"latency_ms": latency_ms,
"probabilities": probabilities.tolist(),
**postprocess_probabilities(probabilities),
}
async def _run_local_inference(image: Image.Image) -> dict[str, Any]:
"""Run both models in-process β used when model weights are available locally."""
async def safe_call(model_name: str, fn):
try:
result = await asyncio.to_thread(fn, image)
LATENCY_HISTOGRAM.labels(model=model_name).observe(result["latency_ms"])
return result
except Exception as exc:
return {"model_key": model_name, "error": str(exc)}
pytorch_result, onnx_result = await asyncio.gather(
safe_call("pytorch", run_pytorch_inference),
safe_call("onnx", run_onnx_inference),
)
return {"pytorch": pytorch_result, "onnx": onnx_result}
async def _call_hf_infer(image: Image.Image) -> dict[str, Any]:
"""Forward dual-model inference to the HF Spaces node via /infer."""
buf = io.BytesIO()
image.save(buf, format="PNG")
buf.seek(0)
async with httpx.AsyncClient(timeout=90.0) as client:
resp = await client.post(
f"{HF_SPACES_URL}/infer",
files={"file": ("xray.png", buf.read(), "image/png")},
)
resp.raise_for_status()
data = resp.json()
result: dict[str, Any] = {}
for key in ("pytorch", "onnx"):
raw = data.get(key) or {}
if "error" in raw:
result[key] = {"model_key": key, "error": raw["error"]}
else:
probs = np.asarray(raw.get("probabilities", []), dtype=np.float32)
latency = float(raw.get("latency_ms") or 0.0)
LATENCY_HISTOGRAM.labels(model=key).observe(latency)
result[key] = {
"model_key": key,
"model_used": "Baseline PyTorch"
if key == "pytorch"
else "Optimized ONNX",
"latency_ms": latency,
"probabilities": probs.tolist(),
**postprocess_probabilities(probs),
}
return result
async def benchmark_both_models(image: Image.Image) -> dict[str, Any]:
"""Route dual-model inference to HF Spaces (proxy mode) or local models."""
if HF_SPACES_URL:
return await _call_hf_infer(image)
return await _run_local_inference(image)
def build_recommendation(
selected_result: dict[str, Any],
drift_result: dict[str, Any],
dual_results: dict[str, Any],
) -> str:
if drift_result["drift_alert"] == "DRIFT_DETECTED":
return "Input distribution differs from the stored training baseline. Manual review is recommended before trusting this result."
if selected_result["low_confidence"]:
return "Prediction confidence is below the review threshold. Treat this as low confidence and escalate for human review."
other_key = "onnx" if selected_result["model_key"] == "pytorch" else "pytorch"
other_result = dual_results.get(other_key, {})
if (
other_result.get("predicted_labels")
and other_result["predicted_labels"] != selected_result["predicted_labels"]
):
return "The two serving paths disagree on the predicted findings. Use this as a monitoring alert and fall back to manual review."
return "Use this output as a triage aid only. PneumoOps monitors latency and drift, but it is not a clinical decision-maker."
def append_history(entry: dict[str, Any]) -> None:
REQUEST_LOG_HISTORY.append(entry)
def emit_structured_log(payload: dict[str, Any]) -> None:
logger.info(json.dumps(payload, ensure_ascii=True))
def save_prediction_data(image: Image.Image, payload: dict[str, Any]) -> None:
"""Save anonymized image and prediction data for model fine-tuning."""
if not COLLECT_DATA:
return
try:
COLLECT_DIR.mkdir(parents=True, exist_ok=True)
record_id = str(uuid.uuid4())
# Save image
img_path = COLLECT_DIR / f"{record_id}.png"
image.save(img_path, format="PNG")
# Save prediction payload
json_path = COLLECT_DIR / f"{record_id}.json"
json_path.write_text(json.dumps(payload, indent=2), encoding="utf-8")
except Exception as e:
logger.error(f"Failed to save collection data: {e}")
@app.get("/health")
def health():
return {
"status": "ok",
"deployment_mode": "proxy" if HF_SPACES_URL else "local",
"hf_spaces_url": HF_SPACES_URL or None,
"profile": PROFILE,
"model_dir": str(MODEL_DIR),
"pytorch_model_loaded": PYTORCH_MODEL is not None,
"onnx_model_loaded": ONNX_SESSION is not None,
"active_onnx_model": ACTIVE_ONNX_MODEL_NAME,
"class_count": len(CLASS_NAMES),
"class_names": CLASS_NAMES,
"multi_label": MULTI_LABEL,
"logit_temperature": LOGIT_TEMPERATURE,
"training_metrics": load_json(RUNTIME_PATHS["training_metrics"]),
"onnx_export_report": load_json(RUNTIME_PATHS["onnx_export_report"]),
"recent_requests": list(REQUEST_LOG_HISTORY),
}
@app.get("/metrics")
def metrics():
return PlainTextResponse(generate_latest(), media_type=CONTENT_TYPE_LATEST)
@app.get("/history")
def history():
return {"recent_requests": list(REQUEST_LOG_HISTORY)}
@app.get("/metrics/class-rates")
def class_prediction_rates():
"""Return per-class prediction rates from the rolling request history."""
history_list = list(REQUEST_LOG_HISTORY)
total = max(len(history_list), 1)
rates: dict[str, float] = {label: 0.0 for label in CLASS_NAMES}
avg_confidence: dict[str, list] = {label: [] for label in CLASS_NAMES}
for entry in history_list:
per_class = entry.get("per_class_predictions", {})
per_class_probs = entry.get("per_class_probabilities", {})
for label in CLASS_NAMES:
if per_class.get(label, False):
rates[label] = rates[label] + 1
if label in per_class_probs:
avg_confidence[label].append(per_class_probs[label])
return {
"window_size": total,
"per_class_prediction_rate": {
label: round(count / total, 4) for label, count in rates.items()
},
"per_class_avg_confidence": {
label: round(float(sum(vals) / len(vals)), 4) if vals else None
for label, vals in avg_confidence.items()
},
"drift_rate": round(
sum(1 for e in history_list if e.get("drift_alert") == "DRIFT_DETECTED")
/ total,
4,
),
}
@app.get("/metrics/calibration")
def calibration_summary():
"""Return per-class calibration (Brier scores) from training metrics."""
tm = load_json(RUNTIME_PATHS["training_metrics"])
return {
"test_macro_brier": tm.get("test_macro_brier"),
"test_macro_auprc": tm.get("test_macro_auprc"),
"test_macro_roc_auc": tm.get("test_macro_roc_auc"),
"per_class_brier": tm.get("per_class_brier", {}),
"per_class_auprc": tm.get("per_class_auprc", {}),
"per_class_roc_auc": tm.get("per_class_roc_auc", {}),
"per_class_recall": tm.get("per_class_recall", {}),
"threshold_details": tm.get("threshold_details", {}),
"class_names": tm.get("class_names", CLASS_NAMES),
}
@app.post("/predict")
async def predict(
request: Request, background_tasks: BackgroundTasks, file: UploadFile = File(...)
):
image = load_image_from_upload(file)
input_summary = summarize_image(image)
validate_image(image, input_summary)
start = time.perf_counter()
dual_results = await benchmark_both_models(image)
selected_key = random.choices(
["pytorch", "onnx"],
weights=[TRAFFIC_WEIGHTS["pytorch"], TRAFFIC_WEIGHTS["onnx"]],
k=1,
)[0]
selected_result = dual_results[selected_key]
warning_flags = []
if "error" in selected_result:
fallback_result = dual_results["pytorch"]
if "error" in fallback_result:
REQUEST_COUNTER.labels(model=selected_key, status="failure").inc()
raise HTTPException(
status_code=503,
detail=f"Both inference backends failed: {dual_results}",
)
selected_result = fallback_result
warning_flags.append(f"{selected_key.upper()} failed, fallback to PyTorch.")
# Increment per-class disease prediction counters
for label in selected_result["predicted_labels"]:
DISEASE_PREDICTION_COUNTER.labels(
disease=label, model=selected_result["model_key"]
).inc()
drift_result = calculate_drift(image)
DRIFT_COUNTER.labels(status=drift_result["drift_alert"]).inc()
REQUEST_COUNTER.labels(model=selected_result["model_key"], status="success").inc()
pytorch_latency = (
dual_results["pytorch"].get("latency_ms")
if "error" not in dual_results["pytorch"]
else None
)
onnx_latency = (
dual_results["onnx"].get("latency_ms")
if "error" not in dual_results["onnx"]
else None
)
latency_delta = None
if pytorch_latency is not None and onnx_latency is not None:
latency_delta = round(float(onnx_latency) - float(pytorch_latency), 2)
timestamp = datetime.now(timezone.utc).isoformat()
response_payload = {
"timestamp": timestamp,
"selected_model": selected_result["model_used"],
"selected_arm": "A" if selected_result["model_key"] == "pytorch" else "B",
"weighted_traffic_split": TRAFFIC_WEIGHTS,
"predicted_labels": selected_result["predicted_labels"],
"all_predictions": selected_result["all_predictions"],
"top_predictions": selected_result["top_predictions"],
"confidence": selected_result["max_confidence"],
"low_confidence": selected_result["low_confidence"],
"inconclusive_scan": selected_result["inconclusive_scan"],
"confidence_review_threshold": LOW_CONFIDENCE_THRESHOLD * 100.0,
"pytorch_latency_ms": pytorch_latency,
"onnx_latency_ms": onnx_latency,
"latency_delta_ms": latency_delta,
"latency_ms": selected_result["latency_ms"],
"drift": drift_result,
"input_summary": input_summary,
"warning_flags": warning_flags,
"recommendation": build_recommendation(
selected_result, drift_result, dual_results
),
"active_onnx_model": ACTIVE_ONNX_MODEL_NAME,
"recent_history": list(REQUEST_LOG_HISTORY),
"cam_b64": dual_results["pytorch"].get("cam_b64"),
}
history_entry = {
"timestamp": timestamp,
"model": selected_result["model_used"],
"latency_ms": selected_result["latency_ms"],
"drift_alert": drift_result["drift_alert"],
"drift_score": drift_result["drift_score"],
"confidence": selected_result["max_confidence"],
"labels": selected_result["predicted_labels"],
"per_class_probabilities": {
CLASS_NAMES[i]: round(float(selected_result["probabilities"][i]), 4)
for i in range(len(CLASS_NAMES))
if i < len(selected_result.get("probabilities", []))
},
"per_class_predictions": {
label: (label in selected_result["predicted_labels"])
for label in CLASS_NAMES
},
}
append_history(history_entry)
response_payload["recent_history"] = list(REQUEST_LOG_HISTORY)
emit_structured_log(
{
"event": "predict",
"timestamp": timestamp,
"model_used": selected_result["model_used"],
"latency_ms": selected_result["latency_ms"],
"confidence": selected_result["max_confidence"],
"drift_status": drift_result["drift_alert"],
"pathologies": selected_result["predicted_labels"],
"client": request.client.host if request.client else None,
}
)
response_payload["request_latency_ms"] = round(
(time.perf_counter() - start) * 1000, 2
)
# Trigger background save for fine-tuning
background_tasks.add_task(save_prediction_data, image, response_payload)
return response_payload
@app.post("/infer")
async def infer_raw(file: UploadFile = File(...)):
"""Raw dual-model inference for remote backend nodes.
Returns probabilities from both PyTorch and ONNX arms with no side-effects
(no metrics, no drift, no history). Only available on the HF Spaces inference node
(i.e. when HF_SPACES_URL is not set)."""
if HF_SPACES_URL:
raise HTTPException(
status_code=501,
detail="This node is a proxy backend; /infer is only served by the inference node.",
)
image = load_image_from_upload(file)
dual = await _run_local_inference(image)
out: dict[str, Any] = {}
for key in ("pytorch", "onnx"):
r = dual.get(key, {})
out[key] = (
{
"probabilities": r.get("probabilities", []),
"latency_ms": r.get("latency_ms"),
}
if "error" not in r
else {"error": r["error"]}
)
return {
**out,
"class_names": CLASS_NAMES,
"thresholds": THRESHOLDS.tolist(),
"multi_label": MULTI_LABEL,
}
# βββ Mount Gradio UI into FastAPI (single-port for HF Spaces) βββββββββββββββ
# This allows the entire app (API + UI) to run on one port (7860).
# - FastAPI REST endpoints remain at /predict, /health, /metrics, etc.
# - Gradio UI is served at / (root)
try:
# Dynamically add frontend dir to path so app.py can be imported
_root_dir = str(BASE_DIR)
if _root_dir not in sys.path:
sys.path.insert(0, _root_dir)
import gradio as gr
from frontend.app import demo as gradio_demo # the gr.Blocks() object
from fastapi.responses import RedirectResponse
@app.get("/")
def redirect_to_ui():
return RedirectResponse(url="/ui")
# Mount Gradio at /ui; FastAPI routes take priority because they're
# registered first via @app.get / @app.post decorators.
app = gr.mount_gradio_app(app, gradio_demo, path="/ui")
logger.info("Gradio UI mounted at /ui β full app on single port.")
except Exception as _e:
logger.warning(f"Gradio mount skipped ({_e}). API-only mode active.")
if __name__ == "__main__":
import uvicorn
port = int(os.getenv("PORT", "7860"))
uvicorn.run(app, host="0.0.0.0", port=port)
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