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Browse files- .gitattributes +1 -0
- logo.png +3 -0
- mock_ehr_service.py +19 -0
- orchestrator.py +26 -0
- patient_data.py +49 -0
- services/mock_ai_service.py +45 -0
.gitattributes
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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logo.png filter=lfs diff=lfs merge=lfs -text
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logo.png
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Git LFS Details
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mock_ehr_service.py
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# We need to tell Python to look one level up for our files
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import sys
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import os
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sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
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# Now we can import our patient data
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from patient_data import PATIENT_ZERO_DATA, PATIENT_ONE_DATA
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def get_patient_data(patient_id: str):
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"""
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Simulates fetching a patient's record from an EHR database.
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"""
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print(f"--- [EHR Service] Fetching data for patient_id: {patient_id} ---")
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if patient_id == "P0-12345":
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return PATIENT_ZERO_DATA
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elif patient_id == "P1-67890":
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return PATIENT_ONE_DATA
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else:
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return None # Return nothing if the patient isn't found
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orchestrator.py
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# Click the "Copy" button in the top-right corner of this box.
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from services.mock_ehr_service import get_patient_data
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from services.mock_ai_service import get_readmission_prediction
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import json
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def run_patient_risk_analysis(patient_id: str):
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"""
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Orchestrates the process of fetching patient data and getting a prediction.
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"""
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print(f"--- [Orchestrator] Starting analysis for patient_id: {patient_id} ---")
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# Step 1: Get patient data from the mock EHR service
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patient_data = get_patient_data(patient_id)
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if not patient_data:
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print(f"--- [Orchestrator] Analysis failed: No data found for patient_id {patient_id} ---")
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return None
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# Step 2: Get a prediction from the mock AI service
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prediction_json = get_readmission_prediction(patient_data)
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prediction_data = json.loads(prediction_json) # Convert the JSON string to a dictionary
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print(f"--- [Orchestrator] Analysis complete for patient_id: {patient_id} ---")
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# Step 3: Return the final analysis data
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return prediction_data
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patient_data.py
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PATIENT_ZERO_DATA = {
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"patient_id": "P0-12345",
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"demographics": {
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"age": 72,
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"sex": "Male"
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},
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"recent_admission": {
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"admission_date": "2024-06-15",
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"discharge_date": "2024-06-22",
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"primary_diagnosis": "Acute Myocardial Infarction",
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"comorbidities": ["Hypertension", "Type 2 Diabetes", "Chronic Kidney Disease"],
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"procedure_history": ["Coronary Artery Bypass Grafting"]
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},
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"lab_results": {
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"hemoglobin_a1c": "7.8%",
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"creatinine_level": "1.9 mg/dL",
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"ejection_fraction": "45%"
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},
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"medications": [
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"Lisinopril",
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"Metformin",
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"Aspirin",
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"Atorvastatin"
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]
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}
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PATIENT_ONE_DATA = {
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"patient_id": "P1-67890",
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"demographics": {
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"age": 55,
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"sex": "Female"
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},
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"recent_admission": {
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"admission_date": "2024-07-01",
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"discharge_date": "2024-07-05",
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"primary_diagnosis": "Pneumonia",
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"comorbidities": ["Asthma"],
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"procedure_history": []
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},
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"lab_results": {
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"hemoglobin_a1c": "5.5%",
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"creatinine_level": "0.8 mg/dL",
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"ejection_fraction": "60%"
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},
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"medications": [
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"Albuterol",
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"Amoxicillin"
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]
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}
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services/mock_ai_service.py
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import json
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def get_readmission_prediction(patient_data: dict):
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"""
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Simulates calling the MedGemma API to get a readmission risk prediction.
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"""
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patient_id = patient_data.get("patient_id")
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print(f"--- [AI Service] Analyzing data for patient_id: {patient_id} ---")
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# Based on the patient, return a different mock prediction
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if patient_id == "P0-12345":
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# Simulate a high-risk patient
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mock_response = {
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"risk_score": 0.85,
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"confidence": "High",
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"key_factors": [
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"History of Acute Myocardial Infarction",
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"High Hemoglobin A1c (7.8%)",
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"Chronic Kidney Disease"
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],
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"recommended_interventions": [
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"Follow-up cardiology appointment within 7 days",
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"Medication reconciliation by pharmacist",
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"Telehealth check-in on day 3 post-discharge"
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]
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}
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elif patient_id == "P1-67890":
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# Simulate a low-risk patient
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mock_response = {
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"risk_score": 0.15,
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"confidence": "High",
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"key_factors": [
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"No major chronic conditions",
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"Successful treatment for Pneumonia"
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],
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"recommended_interventions": [
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"Standard primary care follow-up within 30 days"
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]
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}
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else:
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mock_response = {"error": "Patient data not valid"}
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# The 'json.dumps' part formats the dictionary nicely, like a real API would
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return json.dumps(mock_response, indent=4)
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