Delete app.py

app.py

@@ -1,228 +0,0 @@
-
-import streamlit as st
-import numpy as np
-import matplotlib.pyplot as plt
-from matplotlib.patches import Circle, Arc, Rectangle
-from matplotlib.lines import Line2D
-
-st.set_page_config(page_title="Flow Down Gradients — Simple Explorer", layout="wide")
-
-# ---------------- Pressure presets (mmHg) ----------------
-PRESSURE_PRESETS = {
-    "Demo Preset": {
-        "cap_o2": 52, "cap_co2": 49,
-        "alv_o2": 55, "alv_co2": 45,
-        "thoracic": 761,
-    },
-    "Preset 1": {
-        "cap_o2": 50, "cap_co2": 45,
-        "alv_o2": 100, "alv_co2": 40,
-        "thoracic": 763,
-    },
-    "Preset 2": {
-        "cap_o2": 60, "cap_co2": 45,
-        "alv_o2": 58, "alv_co2": 40,
-        "thoracic": 757,
-    },
-    "Preset 3": {
-        "cap_o2": 48, "cap_co2": 45,
-        "alv_o2": 53, "alv_co2": 8,
-        "thoracic": 768,
-    },
-}
-
-def get_pressure_preset_from_query():
-    qp = st.query_params
-    key = qp.get("preset") if "preset" in qp else None
-    if key in PRESSURE_PRESETS:
-        return key
-    return "Demo Preset"
-
-if "pressure_preset" not in st.session_state:
-    st.session_state.pressure_preset = get_pressure_preset_from_query()
-
-# ---------------- Action Potential presets ----------------
-AP_PRESETS = {
-    "Preset 1": {"more_na": "Extracellular", "more_k": "Intracellular", "more_neg": "Intracellular"},
-    "Preset 2": {"more_na": "Intracellular", "more_k": "Extracellular", "more_neg": "Extracellular"},
-    "Preset 3": {"more_na": "Extracellular", "more_k": "Intracellular", "more_neg": "Extracellular"},
-}
-
-if "ap_preset" not in st.session_state:
-    st.session_state.ap_preset = "Preset 1"
-
-# ---------------- UI ----------------
-st.title("Flow Down Gradients — Simple Explorer")
-
-tab1, tab2 = st.tabs([
-    "Pressure (Alveolus ↔ Capillary)",
-    "Concentration: Action Potential (extracellular ↔ intracellular)",
-])
-
-# ---------------- Tab 1: Pressure ----------------
-with tab1:
-    st.subheader("Pressure Gradients (mmHg)")
-    # Preset buttons
-    bcols = st.columns(4)
-    for name, col in zip(PRESSURE_PRESETS.keys(), bcols):
-        if col.button(name, use_container_width=True):
-            st.session_state.pressure_preset = name
-
-    # Current preset
-    preset_name = st.session_state.pressure_preset
-    p = PRESSURE_PRESETS[preset_name]
-
-    # Values
-    st.markdown(f"**Current preset:** {preset_name}")
-    st.markdown(
-        f"- **Intracapillary O₂:** {p['cap_o2']} mmHg  \n"
-        f"- **Intracapillary CO₂:** {p['cap_co2']} mmHg  \n"
-        f"- **Intraalveolar O₂:** {p['alv_o2']} mmHg  \n"
-        f"- **Intraalveolar CO₂:** {p['alv_co2']} mmHg  \n"
-        f"- **Thoracic pressure:** {p['thoracic']} mmHg"
-    )
-
-    # Diagram (enlarged, placed below values)
-    fig, ax = plt.subplots(figsize=(11.5, 5.6))
-    ax.set_xlim(0, 12); ax.set_ylim(0, 6); ax.axis("off")
-
-    # Alveolus: round sac
-    alve_center = (4.0, 3.0); alve_r = 2.1
-    alve = Circle(alve_center, alve_r, fill=False, lw=2)
-    ax.add_patch(alve)
-    ax.text(alve_center[0], alve_center[1] + alve_r + 0.35, "Alveolus", ha="center", fontsize=13)
-
-    # Capillary: thin vessel hugging right side (two arcs + short straight segments)
-    cap_outer = Arc((6.2, 3.0), 3.6, 3.6, angle=0, theta1=-65, theta2=65, lw=6, capstyle="round")
-    cap_inner = Arc((6.2, 3.0), 3.0, 3.0, angle=0, theta1=-65, theta2=65, lw=6, capstyle="round")
-    ax.add_patch(cap_outer); ax.add_patch(cap_inner)
-    # Straight ends to right
-    ax.plot([7.8, 11.0], [4.2, 4.2], lw=6, solid_capstyle="round")
-    ax.plot([7.8, 11.0], [1.8, 1.8], lw=6, solid_capstyle="round")
-    ax.text(11.2, 3.0, "Capillary", va="center", fontsize=13, rotation=90)
-
-    # Accessibility-friendly markers/colors
-    color_o2, marker_o2 = "tab:blue", "o"   # O2 = blue circle
-    color_co2, marker_co2 = "tab:orange", "s"  # CO2 = orange square
-
-    # Dot counts scaled from mmHg (cap at 150 points per region)
-    maxdots = 150
-    ao2 = int(np.clip(p["alv_o2"], 0, maxdots))
-    aco2 = int(np.clip(p["alv_co2"], 0, maxdots))
-    co2 = int(np.clip(p["cap_o2"], 0, maxdots))
-    cco2 = int(np.clip(p["cap_co2"], 0, maxdots))
-
-    # Alveolar dots: random inside circle
-    rngA = np.random.default_rng(101)
-    need = ao2 + aco2
-    if need > 0:
-        xs, ys = [], []
-        while len(xs) < need:
-            x = rngA.uniform(alve_center[0]-alve_r+0.12, alve_center[0]+alve_r-0.12)
-            y = rngA.uniform(alve_center[1]-alve_r+0.12, alve_center[1]+alve_r-0.12)
-            if (x-alve_center[0])**2 + (y-alve_center[1])**2 <= (alve_r-0.18)**2:
-                xs.append(x); ys.append(y)
-        xs = np.array(xs); ys = np.array(ys)
-        if ao2 > 0:
-            ax.scatter(xs[:ao2], ys[:ao2], s=36, c=color_o2, marker=marker_o2)
-        if aco2 > 0:
-            ax.scatter(xs[ao2:], ys[ao2:], s=36, c=color_co2, marker=marker_co2)
-
-    # Capillary dots: right rectangular segment for clarity
-    rngC = np.random.default_rng(202)
-    cx = rngC.uniform(8.2, 10.8, co2 + cco2)
-    cy = rngC.uniform(1.95, 4.05, co2 + cco2)
-    if co2 > 0:
-        ax.scatter(cx[:co2], cy[:co2], s=36, c=color_o2, marker=marker_o2)
-    if cco2 > 0:
-        ax.scatter(cx[co2:], cy[co2:], s=36, c=color_co2, marker=marker_co2)
-
-    # Clean, accessible legend using Line2D handles (not cramped)
-    legend_elements = [
-        Line2D([0], [0], marker=marker_o2, color='w', label='O₂ (Blue • Circle)',
-               markerfacecolor=color_o2, markersize=10),
-        Line2D([0], [0], marker=marker_co2, color='w', label='CO₂ (Orange • Square)',
-               markerfacecolor=color_co2, markersize=10),
-    ]
-    ax.legend(handles=legend_elements, loc='upper left', bbox_to_anchor=(0.02, 0.98), frameon=False)
-
-    # Stamp preset name
-    ax.text(0.98, 0.05, f"{preset_name}", transform=ax.transAxes, ha="right", va="bottom", fontsize=11, alpha=0.8)
-
-    st.pyplot(fig, clear_figure=True)
-
-# ---------------- Tab 2: Action Potential (presets, no sliders) ----------------
-with tab2:
-    st.subheader("Static starting conditions (no animation)")
-    bcols = st.columns(3)
-    for name, col in zip(AP_PRESETS.keys(), bcols):
-        if col.button(name, use_container_width=True):
-            st.session_state.ap_preset = name
-
-    ap = AP_PRESETS[st.session_state.ap_preset]
-    st.markdown(f"**Current preset:** {st.session_state.ap_preset}")
-    st.markdown(
-        f"- More **Na⁺**: {ap['more_na']}  \n"
-        f"- More **K⁺**: {ap['more_k']}  \n"
-        f"- More **negative**: {ap['more_neg']}"
-    )
-
-    fig, ax = plt.subplots(figsize=(11.5, 5.0))
-    ax.set_xlim(0, 12); ax.set_ylim(0, 6); ax.axis("off")
-
-    # Compartments
-    ax.add_patch(Rectangle((0.8, 1.0), 4.5, 4.0, fill=False, lw=2))  # Extracellular
-    ax.add_patch(Rectangle((6.7, 1.0), 4.5, 4.0, fill=False, lw=2))  # Intracellular
-    ax.plot([6.2, 6.2], [1.0, 5.0], lw=8)  # Membrane
-
-    ax.text(3.05, 5.25, "Extracellular", ha="center", fontsize=12)
-    ax.text(8.95, 5.25, "Intracellular", ha="center", fontsize=12)
-
-    # Polarity signs ABOVE labels
-    if ap["more_neg"] == "Intracellular":
-        ax.text(3.05, 5.85, "+", ha="center", va="center", fontsize=24, alpha=0.6)
-        ax.text(8.95, 5.85, "−", ha="center", va="center", fontsize=24, alpha=0.9)
-    else:
-        ax.text(3.05, 5.85, "−", ha="center", va="center", fontsize=24, alpha=0.9)
-        ax.text(8.95, 5.85, "+", ha="center", va="center", fontsize=24, alpha=0.6)
-
-    # Colors + shapes (accessibility): Na+ = blue circle, K+ = orange square
-    color_na, marker_na = "tab:blue", "o"
-    color_k,  marker_k  = "tab:orange", "s"
-
-    # Dot counts: base + extra on "more" side
-    base_amt = 12
-    extra_amt = 12
-    na_out = base_amt + (extra_amt if ap["more_na"] == "Extracellular" else 0)
-    na_in  = base_amt + (extra_amt if ap["more_na"] == "Intracellular" else 0)
-    k_out  = base_amt + (extra_amt if ap["more_k"]  == "Extracellular" else 0)
-    k_in   = base_amt + (extra_amt if ap["more_k"]  == "Intracellular" else 0)
-
-    rng2 = np.random.default_rng(808)
-    xo = rng2.uniform(1.1, 5.0, na_out + k_out); yo = rng2.uniform(1.2, 4.8, na_out + k_out)
-    xi = rng2.uniform(7.0, 11.4, na_in  + k_in ); yi = rng2.uniform(1.2, 4.8, na_in  + k_in )
-
-    # Draw ions with fixed color+shape per type, regardless of side
-    if na_out > 0:
-        ax.scatter(xo[:na_out], yo[:na_out], s=45, c=color_na, marker=marker_na, label="Na⁺")
-    if k_out > 0:
-        ax.scatter(xo[na_out:], yo[na_out:], s=45, c=color_k, marker=marker_k, label="K⁺")
-    if na_in > 0:
-        ax.scatter(xi[:na_in], yi[:na_in], s=45, c=color_na, marker=marker_na)
-    if k_in > 0:
-        ax.scatter(xi[na_in:], yi[na_in:], s=45, c=color_k, marker=marker_k)
-
-    # Legend
-    legend_elements = [
-        Line2D([0], [0], marker=marker_na, color='w', label='Na⁺ (Blue • Circle)',
-               markerfacecolor=color_na, markersize=10),
-        Line2D([0], [0], marker=marker_k, color='w', label='K⁺ (Orange • Square)',
-               markerfacecolor=color_k, markersize=10),
-    ]
-    ax.legend(handles=legend_elements, loc='upper left', bbox_to_anchor=(0.01, 0.98), frameon=False)
-
-    # Stamp preset
-    ax.text(0.98, 0.05, f"{st.session_state.ap_preset}", transform=ax.transAxes,
-            ha="right", va="bottom", fontsize=11, alpha=0.8)
-
-    st.pyplot(fig, clear_figure=True)