qbrcsupport commited on
Commit
9d13311
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1 Parent(s): fe21309

Update app.py

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Files changed (1) hide show
  1. app.py +4 -3
app.py CHANGED
@@ -383,7 +383,7 @@ with gr.Blocks() as demo:
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  cytof_state = gr.State(CytofImage())
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  # used in scenrios where users define/remove channels multiple times
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  cytof_original_state = gr.State(CytofImage())
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-
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  gr.Markdown('<div class="h-1">Step 1. Upload images</div>')
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  gr.Markdown('<div class="h-2">You may upload one or two files depending on your use case.</div>')
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  gr.Markdown('<div class="h-2 bold">Case 1: &nbsp; Upload a single file</div>')
@@ -515,7 +515,7 @@ with gr.Blocks() as demo:
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  with gr.Column(scale=2):
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  gr.Markdown('<div class="h-2">This analysis measures the degree of co-expression within a pair of neighborhoods.</div>')
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  gr.Markdown('<div class="h-2">Select the clustering method:</div>')
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- info_text = gr.Markdown(update_info_text('k-neighbor'))
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  cluster_method = gr.Radio(['k-neighbor', 'distance'], value='k-neighbor', elem_classes='test', label='')
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  cluster_threshold = gr.Slider(minimum=1, maximum=100, step=1, value=30, interactive=True, label='Clustering threshold')
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  spatial_btn = gr.Button('Run spatial interaction analysis')
@@ -531,7 +531,8 @@ with gr.Blocks() as demo:
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  gr.Markdown('<br>')
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  gr.Markdown('<div class="h-1">Step 6. Visualize positive markers</div>')
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  gr.Markdown('<div class="h-2">Select two markers for side-by-side comparison to visualize their positive states in cells. This serves two purposes: </div>')
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- gr.Markdown('<div class="h-2 bold">(1) Validate the co-expression analysis results. (2) Validate teh spatial interaction analysis results.</div>')
 
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  with gr.Row(): # two marker positive visualization - dropdown options
 
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  cytof_state = gr.State(CytofImage())
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  # used in scenrios where users define/remove channels multiple times
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  cytof_original_state = gr.State(CytofImage())
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+
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  gr.Markdown('<div class="h-1">Step 1. Upload images</div>')
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  gr.Markdown('<div class="h-2">You may upload one or two files depending on your use case.</div>')
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  gr.Markdown('<div class="h-2 bold">Case 1: &nbsp; Upload a single file</div>')
 
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  with gr.Column(scale=2):
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  gr.Markdown('<div class="h-2">This analysis measures the degree of co-expression within a pair of neighborhoods.</div>')
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  gr.Markdown('<div class="h-2">Select the clustering method:</div>')
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+ info_text = gr.Markdown(update_info_text('K-neighbor'))
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  cluster_method = gr.Radio(['k-neighbor', 'distance'], value='k-neighbor', elem_classes='test', label='')
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  cluster_threshold = gr.Slider(minimum=1, maximum=100, step=1, value=30, interactive=True, label='Clustering threshold')
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  spatial_btn = gr.Button('Run spatial interaction analysis')
 
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  gr.Markdown('<br>')
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  gr.Markdown('<div class="h-1">Step 6. Visualize positive markers</div>')
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  gr.Markdown('<div class="h-2">Select two markers for side-by-side comparison to visualize their positive states in cells. This serves two purposes: </div>')
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+ gr.Markdown('<div class="h-2 bold">(1) Validate the co-expression analysis results.</div>')
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+ gr.Markdown('<div class="h-2 bold">(2) Validate teh spatial interaction analysis results.</div>')
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  with gr.Row(): # two marker positive visualization - dropdown options