temporarily remove case 1 in step 1

app.py

@@ -390,37 +390,55 @@ with gr.Blocks() as demo:
     gr.HTML(custom_css)
     
     gr.Markdown('<div class="h-1">Step 1. Upload images</div>')
-    gr.Markdown('<div class="h-2">You may upload one or two files depending on your use case.</div>')
-    gr.Markdown('<div class="h-2 bold">Case 1: &nbsp; Upload a single file</div>')
-    gr.Markdown('<div class="h-2"><ul><li>upload a TXT or CSV file that contains information about antibodies, rare heavy metal isotopes, and image channel names.</li>'
-    '<li>files are following the CyTOF, IMC, or multiplex data convention.</li>'
-    '</ul></div>')
-    gr.Markdown('<div class="h-2 bold">Case 2: &nbsp; Upload multiple files</div>')
+    # gr.Markdown('<div class="h-2">You may upload one or two files depending on your use case.</div>')
+    # gr.Markdown('<div class="h-2 bold">Case 1: &nbsp; Upload a single file</div>')
+    # gr.Markdown('<div class="h-2"><ul><li>upload a TXT or CSV file that contains information about antibodies, rare heavy metal isotopes, and image channel names.</li>'
+    # '<li>files are following the CyTOF, IMC, or multiplex data convention.</li>'
+    # '</ul></div>')
+    # gr.Markdown('<div class="h-2 bold">Case 2: &nbsp; Upload multiple files</div>')
+    gr.Markdown('<div class="h-2 bold">Upload multiple files</div>')
     gr.Markdown('<div class="h-2"><ul><li>upload a TIFF file containing Regions of Interest (ROIs) stored as multiplexed images. <a href="https://qbrc.swmed.edu/labs/xiaoxie/download/multiplex/example_image.tiff" download target="_blank">Example ROI</a></li>'
     '<li>upload a Marker File listing the channels to identify the antibodies. <a href="https://github.com/QBRC/multiTAP/blob/main/notebooks/supplemental/markers_labels_BrCa.txt" download target="_blank">Example Marker File</a></li>'
     '</ul></div><hr>')
     
-    gr.Markdown('<div class="h-2">Select Input Case:</div>')
+    # gr.Markdown('<div class="h-2">Select Input Case:</div>')
     
-    choices = gr.Radio(["Case 1", "Case 2"], value="Case 1", label="Choose Input Case", elem_classes='input-choices')
-
-    def toggle_file_input(choice):
-        if choice == "Case 1":
-            return (
-                gr.update(visible=True, file_types=['.txt', '.csv'], label="TXT or CSV File"),
-                gr.update(visible=False)
-            )
-        else:
-            return (
-                gr.update(visible=True, file_types=[".tiff", '.tif'], label="TIFF File"),
-                gr.update(visible=True)
-            )
+    # choices = gr.Radio(["Case 1", "Case 2"], value="Case 1", label="Choose Input Case", elem_classes='input-choices')
+
+    # def toggle_file_input(choice):
+    #     if choice == "Case 1":
+    #         return (
+    #             gr.update(visible=True, file_types=['.txt', '.csv'], label="TXT or CSV File"),
+    #             gr.update(visible=False)
+    #         )
+    #     else:
+    #     return (
+    #         gr.update(visible=True, file_types=[".tiff", '.tif'], label="TIFF File"),
+    #         gr.update(visible=True)
+    #     )
+
+    # with gr.Row(equal_height=True): # second row where 1) asks for marker file upload and 2) displays the visualization of individual channels
+    #     with gr.Column(scale=2):
+    #         gr.Markdown('<div class="h-2">File Input:</div>')
+    #         img_path = gr.File(file_types=['.txt', '.csv'], label='TXT or CSV File')
+    #         marker_path = gr.File(file_types=['.txt'], label='Marker File', visible=False)
+    #         with gr.Row():
+    #             clear_btn = gr.Button("Clear")
+    #             submit_btn = gr.Button("Upload")
+    #     with gr.Column(scale=3):
+    #         gr.Markdown('<div class="h-2">Marker Information:</div>')
+    #         img_info = gr.Textbox(label='Ensure the number of markers displayed below matches the expected number.')
+    #         gr.Markdown('<div class="h-3">Visualization of individual channels:</div>')
+    #         with gr.Accordion("", open=True):
+    #             img_viz = gr.Plot(elem_classes='no-label no-border')
+                
+    # choices.change(fn=toggle_file_input, inputs=choices, outputs=[img_path, marker_path])
 
     with gr.Row(equal_height=True): # second row where 1) asks for marker file upload and 2) displays the visualization of individual channels
         with gr.Column(scale=2):
             gr.Markdown('<div class="h-2">File Input:</div>')
-            img_path = gr.File(file_types=['.txt', '.csv'], label='TXT or CSV File')
-            marker_path = gr.File(file_types=['.txt'], label='Marker File', visible=False)
+            img_path = gr.File(visible=True, file_types=[".tiff", '.tif'], label="TIFF File")
+            marker_path = gr.File(file_types=['.txt'], label='Marker File', visible=True)
             with gr.Row():
                 clear_btn = gr.Button("Clear")
                 submit_btn = gr.Button("Upload")
@@ -430,8 +448,6 @@ with gr.Blocks() as demo:
             gr.Markdown('<div class="h-3">Visualization of individual channels:</div>')
             with gr.Accordion("", open=True):
                 img_viz = gr.Plot(elem_classes='no-label no-border')
-                
-    choices.change(fn=toggle_file_input, inputs=choices, outputs=[img_path, marker_path])
 
         # img_viz = gr.Plot(label="Visualization of individual channels")
     gr.Markdown('<br>')