Raditya-0 commited on
Commit
96f06ce
·
1 Parent(s): 1740736

Fix Dataset Info

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Files changed (1) hide show
  1. app.py +52 -40
app.py CHANGED
@@ -23,7 +23,7 @@ HYBRID_MODEL = [
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  ("TRANSFORMER", "XGBOOST", "Transformer + XGBoost", "models/TRANSFORMER/xgboost_transformer_optuna_10122025_050346.joblib", "models/XGBOOST/xgboost_transformer_optuna_10122025_044957.joblib"),
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  ]
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- # Tambahkan single learning LSTM dan Transformer
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  SINGLE_MODELS = [
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  ("Single LSTM", "models/LSTM/single_LSTM_default_10122025_135523.joblib"),
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  ("Single Transformer", "models/TRANSFORMER/single_transformer_grid_10122025_115452.joblib"),
@@ -132,11 +132,19 @@ input, select, textarea, .gr-button, .gr-input, .gr-textbox, .gr-dropdown, .gr-f
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  border-color: #444 !important;
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  }
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  .gr-button {border-radius: 6px;}
 
 
 
 
 
 
 
 
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  """
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137
 
138
 
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- with gr.Blocks(css=css) as demo:
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  gr.HTML('<div id="title">Atrial Fibrillation Detect</div>')
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  gr.HTML('<div id="subtitle">Menganalisis data EKG mengenai adanya Atrial Fibration</div>')
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  file_upload = gr.File(label="Upload Dataset/Sinyal (CSV)")
@@ -148,45 +156,49 @@ with gr.Blocks(css=css) as demo:
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  file_upload.change(store_file, inputs=file_upload, outputs=shared_file_path)
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150
  with gr.Tab("Dataset Info"):
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- gr.Markdown("""
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- ## Daftar File Dataset
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- - [Download mimic_perform_af_001_data.csv](file=Data/mimic_perform_af_001_data.csv) (Atrial Fibrillation)
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- - [Download mimic_perform_non_af_001_data.csv](file=Data/mimic_perform_non_af_001_data.csv) (Non-Atrial Fibrillation)
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-
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- **Catatan:**
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- - Dataset yang digunakan untuk training model adalah dataset yang sama dengan yang Anda lihat di sini.
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- - File yang disediakan di atas adalah test dataset, Anda bisa menguji model dengan file tersebut.
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- - Anda juga dapat menggunakan data lain dengan format serupa untuk pengujian.
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-
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- Dataset ini merupakan subset dari MIMIC III Waveform Database yang telah dianotasi untuk mendeteksi Atrial Fibrillation (AF) dan Non-AF. Dataset dapat digunakan untuk riset deteksi AF berbasis sinyal EKG.
162
- """)
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- gr.Textbox(value="""
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- This dataset is licensed under the Open Data Commons Open Database License v1.0 (ODbL 1.0 license).
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- Further details are available at: https://opendatacommons.org/licenses/odbl/summary/
166
-
167
- This dataset is derived from the MIMIC III Waveform Database:
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- Moody, B., Moody, G., Villarroel, M., Clifford, G. D., & Silva, I. (2020). MIMIC-III Waveform Database (version 1.0). PhysioNet. https://doi.org/10.13026/c2607m.
169
-
170
- The MIMIC III Waveform Database is licensed under the ODbL 1.0 license.
171
-
172
- The MIMIC-III database is described in the following publication:
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- Johnson, A. E. W., Pollard, T. J., Shen, L., Lehman, L. H., Feng, M., Ghassemi, M., Moody, B., Szolovits, P., Celi, L. A., & Mark, R. G. (2016). MIMIC-III, a freely accessible critical care database. Scientific Data, 3, 160035. https://doi.org/10.1038/sdata.2016.35
174
-
175
- It is available on PhysioNet, https://physionet.org/ :
176
- Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P. C., Mark, R., ... & Stanley, H. E. (2000). PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.
177
-
178
-
179
- The following annotations of AF and non-AF were used to create the dataset:
180
-
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- Bashar, Syed Khairul (2020): Atrial Fibrillation annotations of electrocardiogram from MIMIC III matched subset. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12149091.v1
182
-
183
- Bashar, S.K., Ding, E., Walkey, A.J., McManus, D.D. and Chon, K.H., 2019. Noise Detection in Electrocardiogram Signals for Intensive Care Unit Patients. IEEE Access, 7, pp.88357-88368. https://doi.org/10.1109/ACCESS.2019.2926199
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-
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- This annotation information is reproduced under the terms of the CC BY 4.0 licence: https://creativecommons.org/licenses/by/4.0/
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- """, label="Lisensi Dataset", lines=18, interactive=False)
 
 
 
 
187
 
188
  with gr.Tab("Analyze Dataset"):
189
- info_ds = gr.Textbox(label="Info Dataset", interactive=False)
190
  preview_ds = gr.Dataframe(label="Preview Data", interactive=False)
191
  plot_ds = gr.Plot(label="Plot Sinyal (ECG)")
192
  btn_ds = gr.Button("Analyze Dataset")
@@ -234,4 +246,4 @@ This annotation information is reproduced under the terms of the CC BY 4.0 licen
234
 
235
  tombol.click(lambda s, m: analisis_sinyal(get_file_for_model(s), m), inputs=[shared_file_path, pilih_model], outputs=[hasil, visual])
236
 
237
- demo.launch()
 
23
  ("TRANSFORMER", "XGBOOST", "Transformer + XGBoost", "models/TRANSFORMER/xgboost_transformer_optuna_10122025_050346.joblib", "models/XGBOOST/xgboost_transformer_optuna_10122025_044957.joblib"),
24
  ]
25
 
26
+ # single learning LSTM dan Transformer
27
  SINGLE_MODELS = [
28
  ("Single LSTM", "models/LSTM/single_LSTM_default_10122025_135523.joblib"),
29
  ("Single Transformer", "models/TRANSFORMER/single_transformer_grid_10122025_115452.joblib"),
 
132
  border-color: #444 !important;
133
  }
134
  .gr-button {border-radius: 6px;}
135
+ .license-box {
136
+ border: 2px solid #fff;
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+ border-radius: 10px;
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+ padding: 18px;
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+ margin-top: 18px;
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+ background: #111;
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+ color: #fff;
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+ }
143
  """
144
 
145
 
146
 
147
+ with gr.Blocks() as demo:
148
  gr.HTML('<div id="title">Atrial Fibrillation Detect</div>')
149
  gr.HTML('<div id="subtitle">Menganalisis data EKG mengenai adanya Atrial Fibration</div>')
150
  file_upload = gr.File(label="Upload Dataset/Sinyal (CSV)")
 
156
  file_upload.change(store_file, inputs=file_upload, outputs=shared_file_path)
157
 
158
  with gr.Tab("Dataset Info"):
159
+ gr.Markdown(
160
+ """
161
+ ## Daftar File Dataset
162
+ Gunakan tombol download di bawah untuk mengunduh file dataset:
163
+ """
164
+ )
165
+ gr.Markdown(f"""
166
+ **Download Dataset:**
167
+ - [Download mimic_perform_af_001_data.csv](file/Data/mimic_perform_af_001_data.csv) (Atrial Fibrillation)
168
+ - [Download mimic_perform_non_af_001_data.csv](file/Data/mimic_perform_non_af_001_data.csv) (Non-Atrial Fibrillation)
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+
170
+ <span style='color:#ffb300'><b>Catatan:</b></span> Jika link tidak bisa di-klik atau file tidak terunduh, silakan akses manual di folder berikut:<br>
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+ <code>{os.path.abspath('Data')}</code>
172
+ """
173
+ )
174
+ gr.Markdown(
175
+ """
176
+ **Catatan:**
177
+
178
+ Dataset ini merupakan subset dari MIMIC III Waveform Database yang telah dianotasi untuk mendeteksi Atrial Fibrillation (AF) dan Non-AF. Dataset dapat digunakan untuk riset deteksi AF berbasis sinyal EKG.
179
+ """
180
+ )
181
+ gr.Markdown(
182
+ """
183
+ <div class="license-box">
184
+ <b>Lisensi Dataset</b>
185
+ <br>This dataset is licensed under the Open Data Commons Open Database License v1.0 (ODbL 1.0 license).<br>
186
+ Further details: <a href="https://opendatacommons.org/licenses/odbl/summary/" target="_blank">ODbL 1.0</a><br><br>
187
+ This dataset is derived from the MIMIC III Waveform Database:<br>
188
+ Moody, B., Moody, G., Villarroel, M., Clifford, G. D., & Silva, I. (2020). MIMIC-III Waveform Database (version 1.0). PhysioNet. <a href="https://doi.org/10.13026/c2607m" target="_blank">https://doi.org/10.13026/c2607m</a><br><br>
189
+ The MIMIC III Waveform Database is licensed under the ODbL 1.0 license.<br><br>
190
+ The MIMIC-III database is described in:<br>
191
+ Johnson, A. E. W., Pollard, T. J., Shen, L., Lehman, L. H., Feng, M., Ghassemi, M., Moody, B., Szolovits, P., Celi, L. A., & Mark, R. G. (2016). MIMIC-III, a freely accessible critical care database. Scientific Data, 3, 160035. <a href="https://doi.org/10.1038/sdata.2016.35" target="_blank">https://doi.org/10.1038/sdata.2016.35</a><br><br>
192
+ It is available on PhysioNet: <a href="https://physionet.org/" target="_blank">https://physionet.org/</a><br>
193
+ Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P. C., Mark, R., ... & Stanley, H. E. (2000). PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.<br><br>
194
+ The following annotations of AF and non-AF were used to create the dataset:<br>
195
+ Bashar, Syed Khairul (2020): Atrial Fibrillation annotations of electrocardiogram from MIMIC III matched subset. figshare. Dataset. <a href="https://doi.org/10.6084/m9.figshare.12149091.v1" target="_blank">https://doi.org/10.6084/m9.figshare.12149091.v1</a><br><br>
196
+ Bashar, S.K., Ding, E., Walkey, A.J., McManus, D.D. and Chon, K.H., 2019. Noise Detection in Electrocardiogram Signals for Intensive Care Unit Patients. IEEE Access, 7, pp.88357-88368. <a href="https://doi.org/10.1109/ACCESS.2019.2926199" target="_blank">https://doi.org/10.1109/ACCESS.2019.2926199</a><br><br>
197
+ This annotation information is reproduced under the terms of the <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">CC BY 4.0 licence</a>
198
+ </div> """,elem_id=None)
199
 
200
  with gr.Tab("Analyze Dataset"):
201
+ info_ds = gr.Textbox(label="Info Dataset", interactive=False, lines=8)
202
  preview_ds = gr.Dataframe(label="Preview Data", interactive=False)
203
  plot_ds = gr.Plot(label="Plot Sinyal (ECG)")
204
  btn_ds = gr.Button("Analyze Dataset")
 
246
 
247
  tombol.click(lambda s, m: analisis_sinyal(get_file_for_model(s), m), inputs=[shared_file_path, pilih_model], outputs=[hasil, visual])
248
 
249
+ demo.launch(css=css)