Spaces:
Sleeping
Sleeping
File size: 28,009 Bytes
1cb40e2 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 | # step5_visualization.py
# Purpose: End user ECG clinical dashboard with file picker
# NEW: Big verdict banner at top showing arrhythmia present/absent
# Models: Random Forest + CNN (trained on 8 records)
# Output: step5_dashboard.png
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import matplotlib.patches as mpatches
import wfdb
import pickle
import os
import sys
import tensorflow as tf
from scipy.signal import butter, filtfilt, find_peaks
from tkinter import Tk, filedialog
import warnings
warnings.filterwarnings('ignore')
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'
print("=== ECG Arrhythmia Detection System ===\n")
# -------------------------------------------------------
# SECTION 1: Configuration
# -------------------------------------------------------
MODEL_DIR = r'D:\ecg_arr'
WINDOW_BEFORE = int(0.250 * 360)
WINDOW_AFTER = int(0.400 * 360)
SEGMENT_LEN = WINDOW_BEFORE + WINDOW_AFTER
LABEL_MAP = {
'N': 'N', 'L': 'N', 'R': 'N',
'e': 'N', 'j': 'N', 'B': 'N',
'V': 'V', 'E': 'V',
'A': 'A', 'a': 'A', 'J': 'A',
'S': 'A', 'F': 'A',
}
SKIP_LABELS = ['+', '~', '|', 'Q', 'U', 'f', 'x']
BEAT_COLORS = {
'N': '#2ecc71',
'A': '#e67e22',
'V': '#e74c3c',
}
# -------------------------------------------------------
# SECTION 2: Load Models
# -------------------------------------------------------
print("Loading trained models...")
with open(os.path.join(MODEL_DIR, 'best_model.pkl'), 'rb') as f:
rf_model = pickle.load(f)
with open(os.path.join(MODEL_DIR, 'scaler.pkl'), 'rb') as f:
scaler = pickle.load(f)
cnn_model = tf.keras.models.load_model(
os.path.join(MODEL_DIR, 'cnn_model.keras'),
compile=False)
with open(os.path.join(MODEL_DIR, 'cnn_encoder.pkl'), 'rb') as f:
encoder = pickle.load(f)
print("Models loaded : Random Forest + CNN")
# -------------------------------------------------------
# SECTION 3: File Picker Dialog
# -------------------------------------------------------
def pick_ecg_file():
"""Opens file picker for user to select .dat ECG file"""
print("\nOpening file picker — please select your ECG .dat file...\n")
root = Tk()
root.withdraw()
root.attributes('-topmost', True)
file_path = filedialog.askopenfilename(
title="Select ECG .dat file",
filetypes=[
("ECG Data Files", "*.dat"),
("All Files", "*.*")
]
)
root.destroy()
if not file_path:
print("No file selected. Exiting.")
sys.exit()
data_folder = os.path.dirname(file_path)
record_name = os.path.splitext(os.path.basename(file_path))[0]
record_path = os.path.join(data_folder, record_name)
hea_path = record_path + '.hea'
if not os.path.exists(hea_path):
print(f"ERROR: Could not find {hea_path}")
sys.exit()
print(f"File selected : {file_path}")
print(f"Record name : {record_name}")
print(f"Data folder : {data_folder}")
return record_path, record_name, data_folder
# -------------------------------------------------------
# SECTION 4: Helper Functions
# -------------------------------------------------------
def bandpass_filter(signal, lowcut=0.5, highcut=40.0, fs=360, order=4):
"""Bandpass filter — removes noise from ECG signal"""
nyquist = 0.5 * fs
low = lowcut / nyquist
high = highcut / nyquist
b, a = butter(order, [low, high], btype='band')
return filtfilt(b, a, signal)
def detect_r_peaks(signal, fs=360, threshold=0.15):
"""Adaptive R-peak detection"""
diff_signal = np.diff(signal)
squared = diff_signal ** 2
window_size = int(0.150 * fs)
kernel = np.ones(window_size) / window_size
integrated = np.convolve(squared, kernel, mode='same')
min_distance = int(0.200 * fs)
height_thresh = np.percentile(integrated, 100 * (1 - threshold))
r_peaks, _ = find_peaks(integrated,
distance=min_distance,
height=height_thresh)
return r_peaks
def assess_risk(predictions):
"""Assess cardiac risk based on beat classifications"""
counts = pd.Series(predictions).value_counts()
v_count = counts.get('V', 0)
a_count = counts.get('A', 0)
total = len(predictions)
v_pct = v_count / total * 100
a_pct = a_count / total * 100
if v_pct > 10 or v_count > 100:
return 'HIGH RISK', '#e74c3c'
elif v_pct > 2 or a_pct > 5 or a_count > 30:
return 'MODERATE', '#e67e22'
else:
return 'LOW RISK', '#2ecc71'
def get_verdict(rf_predictions, cnn_predictions):
"""
Determines arrhythmia verdict using average of RF and CNN predictions.
Returns:
verdict : verdict text
verdict_color : color for text
verdict_bg : background color
verdict_icon : emoji indicator
verdict_detail: detailed breakdown text
"""
total = len(rf_predictions)
rf_counts_dict = pd.Series(rf_predictions).value_counts().to_dict()
cnn_counts_dict = pd.Series(cnn_predictions).value_counts().to_dict()
# Average both models for final verdict
rf_v_pct = rf_counts_dict.get('V', 0) / total * 100
rf_a_pct = rf_counts_dict.get('A', 0) / total * 100
cnn_v_pct = cnn_counts_dict.get('V', 0) / total * 100
cnn_a_pct = cnn_counts_dict.get('A', 0) / total * 100
avg_v_pct = (rf_v_pct + cnn_v_pct) / 2
avg_a_pct = (rf_a_pct + cnn_a_pct) / 2
has_v = avg_v_pct > 5
has_a = avg_a_pct > 5
if has_v and has_a:
return (
'MULTIPLE ARRHYTHMIAS DETECTED',
'#e74c3c', '#2d0a0a', '🔴',
f'Ventricular: {avg_v_pct:.1f}% | Atrial: {avg_a_pct:.1f}%'
)
elif has_v:
return (
'VENTRICULAR ARRHYTHMIA DETECTED',
'#e74c3c', '#2d0a0a', '🔴',
f'Ventricular beats: {avg_v_pct:.1f}% of total beats'
)
elif has_a:
return (
'ATRIAL ARRHYTHMIA DETECTED',
'#e67e22', '#2d1a00', '⚠️',
f'Atrial beats: {avg_a_pct:.1f}% of total beats'
)
else:
return (
'NO ARRHYTHMIA DETECTED',
'#2ecc71', '#0a2d1a', '✅',
'Rhythm appears normal'
)
# -------------------------------------------------------
# SECTION 5: Pick ECG File
# -------------------------------------------------------
record_path, record_name, data_folder = pick_ecg_file()
# -------------------------------------------------------
# SECTION 6: Load and Process Selected ECG
# -------------------------------------------------------
print(f"\nProcessing Record {record_name}...")
record = wfdb.rdrecord(record_path)
ecg_signal = record.p_signal[:, 0]
fs = record.fs
ecg_filtered = bandpass_filter(ecg_signal, fs=fs)
r_peaks = detect_r_peaks(ecg_filtered, fs=fs, threshold=0.15)
print(f"Sampling rate : {fs} Hz")
print(f"Signal duration : {len(ecg_signal)/fs/60:.1f} minutes")
print(f"R-peaks detected : {len(r_peaks)}")
atr_path = record_path + '.atr'
has_annotation = os.path.exists(atr_path)
if has_annotation:
annotation = wfdb.rdann(record_path, 'atr')
ann_samples = annotation.sample
ann_symbols = annotation.symbol
print(f"Annotations found : {len(ann_samples)} beats")
print(f"Beat types (raw) : {set(ann_symbols)}")
mapped_all = [LABEL_MAP.get(s, None) for s in ann_symbols]
mapped_all = [m for m in mapped_all if m is not None]
mapped_counts = pd.Series(mapped_all).value_counts()
print(f"Beat types (mapped) :")
for label, count in mapped_counts.items():
print(f" {label} : {count} ({count/len(mapped_all)*100:.1f}%)")
else:
ann_samples = np.array([])
ann_symbols = np.array([])
print("Annotations : Not found")
# -------------------------------------------------------
# SECTION 7: Extract Features + Segments
# -------------------------------------------------------
qrs_before = int(0.050 * fs)
qrs_after = int(0.050 * fs)
p_start = int(0.200 * fs)
st_start = int(0.080 * fs)
st_end = int(0.120 * fs)
feature_cols = [
'rr_interval_ms', 'heart_rate_bpm', 'qrs_duration_ms',
'st_deviation_mv', 'rr_variability_ms', 'pr_interval_ms'
]
features_list = []
segments_list = []
true_labels = []
valid_r_peaks = []
print("\nExtracting features and segments...")
for i, r in enumerate(r_peaks):
if i == 0:
continue
if (r - max(p_start, WINDOW_BEFORE)) < 0:
continue
if (r + max(st_end, WINDOW_AFTER)) >= len(ecg_filtered):
continue
try:
# RR Interval
rr_samples = int(r_peaks[i]) - int(r_peaks[i-1])
rr_interval = (rr_samples / fs) * 1000
if rr_interval < 200 or rr_interval > 3000:
continue
heart_rate = round(60000 / rr_interval, 2)
qrs_duration = round(((qrs_before + qrs_after) / fs) * 1000, 2)
pr_interval = round((p_start / fs) * 1000, 2)
st_segment = ecg_filtered[r + st_start : r + st_end]
st_deviation = round(float(np.mean(st_segment)), 4)
if i >= 2:
prev_rr = (int(r_peaks[i-1]) - int(r_peaks[i-2])) / fs * 1000
rr_variability = round(abs(rr_interval - prev_rr), 2)
else:
rr_variability = 0.0
# CNN Segment
segment = ecg_filtered[r - WINDOW_BEFORE : r + WINDOW_AFTER]
seg_min = segment.min()
seg_max = segment.max()
if seg_max - seg_min <= 0:
continue
segment_norm = 2 * (segment - seg_min) / (seg_max - seg_min) - 1
# Ground Truth Label
if has_annotation and len(ann_samples) > 0:
distances = np.abs(ann_samples - r)
closest_idx = int(np.argmin(distances))
if distances[closest_idx] < int(0.050 * fs):
raw_label = ann_symbols[closest_idx]
if raw_label in SKIP_LABELS:
continue
mapped = LABEL_MAP.get(raw_label, None)
if mapped is None:
continue
true_labels.append(mapped)
else:
true_labels.append('Unknown')
else:
true_labels.append('Unknown')
features_list.append({
'r_peak_sample' : int(r),
'rr_interval_ms' : round(rr_interval, 2),
'heart_rate_bpm' : heart_rate,
'qrs_duration_ms' : qrs_duration,
'pr_interval_ms' : pr_interval,
'st_deviation_mv' : st_deviation,
'rr_variability_ms': rr_variability,
})
segments_list.append(segment_norm)
valid_r_peaks.append(r)
except Exception:
continue
features_df = pd.DataFrame(features_list)
segments_arr = np.array(segments_list)
valid_r_peaks = np.array(valid_r_peaks)
true_arr = np.array(true_labels)
print(f"Valid beats extracted : {len(features_df)}")
# -------------------------------------------------------
# SECTION 8: Random Forest Predictions
# -------------------------------------------------------
X_rf = scaler.transform(features_df[feature_cols].values)
rf_predictions = rf_model.predict(X_rf)
features_df['rf_predicted'] = rf_predictions
rf_counts = pd.Series(rf_predictions).value_counts()
print(f"\nRandom Forest Results :")
for label, count in rf_counts.items():
pct = count / len(rf_predictions) * 100
print(f" {label} : {count} beats ({pct:.1f}%)")
# -------------------------------------------------------
# SECTION 9: CNN Predictions
# -------------------------------------------------------
X_cnn = segments_arr.reshape(segments_arr.shape[0],
segments_arr.shape[1], 1)
cnn_pred_prob = cnn_model.predict(X_cnn, verbose=0)
cnn_pred_idx = np.argmax(cnn_pred_prob, axis=1)
cnn_predictions = encoder.inverse_transform(cnn_pred_idx)
features_df['cnn_predicted'] = cnn_predictions
cnn_counts = pd.Series(cnn_predictions).value_counts()
print(f"\nCNN Results :")
for label, count in cnn_counts.items():
pct = count / len(cnn_predictions) * 100
print(f" {label} : {count} beats ({pct:.1f}%)")
# -------------------------------------------------------
# SECTION 10: Accuracy vs Ground Truth
# -------------------------------------------------------
known_mask = true_arr != 'Unknown'
known_count = known_mask.sum()
if known_count > 0:
rf_correct = (rf_predictions[known_mask] == true_arr[known_mask]).sum()
cnn_correct = (cnn_predictions[known_mask] == true_arr[known_mask]).sum()
rf_acc = rf_correct / known_count
cnn_acc = cnn_correct / known_count
print(f"\nGround Truth Comparison:")
print(f" Known beats : {known_count}")
print(f" RF Accuracy : {rf_acc*100:.2f}%")
print(f" CNN Accuracy : {cnn_acc*100:.2f}%")
print(f"\nPer Class Accuracy :")
for label in ['N', 'A', 'V']:
mask = true_arr[known_mask] == label
if mask.sum() > 0:
rf_ca = (rf_predictions[known_mask][mask] == label).mean()
cnn_ca = (cnn_predictions[known_mask][mask] == label).mean()
print(f" {label} — RF: {rf_ca*100:.1f}% | "
f"CNN: {cnn_ca*100:.1f}% | "
f"Count: {mask.sum()}")
else:
rf_acc = None
cnn_acc = None
# -------------------------------------------------------
# SECTION 11: Verdict + Risk
# -------------------------------------------------------
verdict, verdict_color, verdict_bg, \
verdict_icon, verdict_detail = get_verdict(rf_predictions, cnn_predictions)
rf_risk, rf_risk_color = assess_risk(rf_predictions)
cnn_risk, cnn_risk_color = assess_risk(cnn_predictions)
rf_acc_str = f"{rf_acc*100:.1f}%" if rf_acc else "N/A"
cnn_acc_str = f"{cnn_acc*100:.1f}%" if cnn_acc else "N/A"
print(f"\nVerdict : {verdict_icon} {verdict}")
print(f"RF Risk : {rf_risk}")
print(f"CNN Risk : {cnn_risk}")
# -------------------------------------------------------
# SECTION 12: Build Dashboard
# -------------------------------------------------------
print("\nBuilding clinical dashboard...")
fig = plt.figure(figsize=(22, 18))
fig.patch.set_facecolor('#0f1117')
# -------------------------------------------------------
# VERDICT BANNER — Big and clear at very top
# -------------------------------------------------------
# Colored background box for verdict
verdict_ax = fig.add_axes([0.02, 0.955, 0.96, 0.038])
verdict_ax.set_facecolor(verdict_bg)
verdict_ax.axis('off')
for spine in verdict_ax.spines.values():
spine.set_edgecolor(verdict_color)
spine.set_linewidth(2.5)
spine.set_visible(True)
# Main verdict text — very large and bold
fig.text(0.5, 0.976,
f'{verdict_icon} {verdict} {verdict_icon}',
ha='center', va='center',
fontsize=20, fontweight='bold',
color=verdict_color)
# Verdict detail line
fig.text(0.5, 0.961,
verdict_detail,
ha='center', va='center',
fontsize=11, color='#dddddd')
# -------------------------------------------------------
# INFO BAR — below verdict
# -------------------------------------------------------
info_ax = fig.add_axes([0.02, 0.915, 0.96, 0.033])
info_ax.set_facecolor('#1a1a2e')
info_ax.axis('off')
for spine in info_ax.spines.values():
spine.set_edgecolor('#444444')
spine.set_linewidth(0.5)
spine.set_visible(True)
fig.text(0.5, 0.932,
f'Record: {record_name} | '
f'Total Beats: {len(features_df)} | '
f'Duration: {len(ecg_signal)/fs/60:.1f} min | '
f'RF Accuracy: {rf_acc_str} | '
f'CNN Accuracy: {cnn_acc_str} | '
f'RF Risk: {rf_risk} | '
f'CNN Risk: {cnn_risk}',
ha='center', va='center',
fontsize=10, color='#aaaaaa')
# -------------------------------------------------------
# GRID LAYOUT for panels
# -------------------------------------------------------
gs = gridspec.GridSpec(
4, 3,
figure=fig,
hspace=0.5,
wspace=0.35,
top=0.90,
bottom=0.05,
left=0.06,
right=0.97
)
# -------------------------------------------------------
# PANEL 1: ECG Waveform (first 10 seconds)
# -------------------------------------------------------
ax1 = fig.add_subplot(gs[0, :])
ax1.set_facecolor('#1a1a2e')
n_samples = min(10 * fs, len(ecg_filtered))
time_axis = np.arange(n_samples) / fs
ax1.plot(time_axis, ecg_filtered[:n_samples],
color='#4a9eff', linewidth=0.8,
alpha=0.9, zorder=2)
r_in_window = valid_r_peaks[valid_r_peaks < n_samples]
for r in r_in_window:
idx = np.where(valid_r_peaks == r)[0]
if len(idx) == 0:
continue
pred = rf_predictions[idx[0]]
color = BEAT_COLORS.get(pred, 'white')
ax1.scatter(r/fs, ecg_filtered[r],
color=color, s=80, zorder=3)
ax1.axvspan((r - qrs_before)/fs,
(r + qrs_after)/fs,
alpha=0.15, color=color, zorder=1)
legend_patches = [
mpatches.Patch(color='#2ecc71', label='Normal (N)'),
mpatches.Patch(color='#e67e22', label='Atrial (A)'),
mpatches.Patch(color='#e74c3c', label='Ventricular (V)'),
]
ax1.legend(handles=legend_patches, loc='upper right',
facecolor='#1a1a2e', edgecolor='#444444',
labelcolor='white', fontsize=9)
ax1.set_title(f'ECG Waveform — Color Coded by Beat Type (First 10 seconds)',
color='white', fontsize=11, pad=8)
ax1.set_xlabel('Time (seconds)', color='#aaaaaa')
ax1.set_ylabel('Amplitude (mV)', color='#aaaaaa')
ax1.tick_params(colors='#aaaaaa')
ax1.spines['bottom'].set_color('#444444')
ax1.spines['left'].set_color('#444444')
ax1.spines['top'].set_visible(False)
ax1.spines['right'].set_visible(False)
ax1.grid(True, alpha=0.15, color='#555555')
# -------------------------------------------------------
# PANEL 2: RF Beat Distribution
# -------------------------------------------------------
ax2 = fig.add_subplot(gs[1, 0])
ax2.set_facecolor('#1a1a2e')
rf_labels = list(rf_counts.index)
rf_sizes = list(rf_counts.values)
rf_colors = [BEAT_COLORS.get(l, '#888888') for l in rf_labels]
ax2.pie(rf_sizes, labels=rf_labels,
colors=rf_colors,
explode=[0.05]*len(rf_labels),
autopct='%1.1f%%', startangle=90,
textprops={'color': 'white', 'fontsize': 10})
ax2.set_title('RF Beat Distribution',
color='white', fontsize=11, pad=8)
# -------------------------------------------------------
# PANEL 3: CNN Beat Distribution
# -------------------------------------------------------
ax3 = fig.add_subplot(gs[1, 1])
ax3.set_facecolor('#1a1a2e')
cnn_labels = list(cnn_counts.index)
cnn_sizes = list(cnn_counts.values)
cnn_colors = [BEAT_COLORS.get(l, '#888888') for l in cnn_labels]
ax3.pie(cnn_sizes, labels=cnn_labels,
colors=cnn_colors,
explode=[0.05]*len(cnn_labels),
autopct='%1.1f%%', startangle=90,
textprops={'color': 'white', 'fontsize': 10})
ax3.set_title('CNN Beat Distribution',
color='white', fontsize=11, pad=8)
# -------------------------------------------------------
# PANEL 4: Clinical Summary
# -------------------------------------------------------
ax4 = fig.add_subplot(gs[1, 2])
ax4.set_facecolor('#1a1a2e')
ax4.axis('off')
avg_hr = features_df['heart_rate_bpm'].mean()
min_hr = features_df['heart_rate_bpm'].min()
max_hr = features_df['heart_rate_bpm'].max()
avg_st = features_df['st_deviation_mv'].mean()
duration = len(ecg_signal) / fs / 60
# Normal heart rate check
if avg_hr < 60:
hr_status = 'BRADYCARDIA'
hr_color = '#e67e22'
elif avg_hr > 100:
hr_status = 'TACHYCARDIA'
hr_color = '#e74c3c'
else:
hr_status = 'NORMAL'
hr_color = '#2ecc71'
# ST deviation check
if abs(avg_st) > 0.1:
st_status = 'ABNORMAL'
st_color = '#e74c3c'
else:
st_status = 'NORMAL'
st_color = '#2ecc71'
# Per class accuracy
per_class_lines = []
if known_count > 0:
for label in ['N', 'A', 'V']:
mask = true_arr[known_mask] == label
if mask.sum() > 0:
rf_ca = (rf_predictions[known_mask][mask] == label).mean()
cnn_ca = (cnn_predictions[known_mask][mask] == label).mean()
per_class_lines.append(
(f'{label}: RF {rf_ca*100:.0f}% CNN {cnn_ca*100:.0f}%',
BEAT_COLORS.get(label, 'white'), 9, False)
)
summary_lines = [
('CLINICAL SUMMARY', 'white', 12, True),
('', 'white', 8, False),
(f'Record : {record_name}', '#aaaaaa', 9, False),
(f'Duration : {duration:.1f} min', '#aaaaaa', 9, False),
(f'Total Beats : {len(features_df)}', '#aaaaaa', 9, False),
('', 'white', 8, False),
('HEART RATE', '#4a9eff', 9, True),
(f'Average : {avg_hr:.1f} BPM', 'white', 9, False),
(f'Min : {min_hr:.1f} BPM', 'white', 9, False),
(f'Max : {max_hr:.1f} BPM', 'white', 9, False),
(f'Status : {hr_status}', hr_color, 9, True),
('', 'white', 8, False),
('ST DEVIATION', '#4a9eff', 9, True),
(f'Average : {avg_st:.4f} mV', 'white', 9, False),
(f'Status : {st_status}', st_color, 9, True),
('', 'white', 8, False),
('MODEL ACCURACY', '#4a9eff', 9, True),
(f'RF : {rf_acc_str}', '#2ecc71', 9, False),
(f'CNN : {cnn_acc_str}', '#2ecc71', 9, False),
('', 'white', 8, False),
('PER CLASS ACCURACY', '#4a9eff', 9, True),
] + per_class_lines
y_pos = 0.97
for text, color, size, bold in summary_lines:
weight = 'bold' if bold else 'normal'
ax4.text(0.05, y_pos, text,
transform=ax4.transAxes,
color=color, fontsize=size,
fontweight=weight,
verticalalignment='top',
fontfamily='monospace')
y_pos -= 0.048
for spine in ax4.spines.values():
spine.set_edgecolor('#444444')
spine.set_linewidth(0.5)
spine.set_visible(True)
# -------------------------------------------------------
# PANEL 5: Heart Rate Over Time
# -------------------------------------------------------
ax5 = fig.add_subplot(gs[2, :2])
ax5.set_facecolor('#1a1a2e')
time_minutes = features_df['r_peak_sample'] / fs / 60
for label, color in BEAT_COLORS.items():
mask = features_df['rf_predicted'] == label
if mask.sum() > 0:
ax5.scatter(time_minutes[mask],
features_df[mask]['heart_rate_bpm'],
color=color, s=6, alpha=0.7, label=label)
ax5.axhline(y=60, color='#ffff00', linewidth=0.8,
linestyle='--', alpha=0.5, label='60 BPM')
ax5.axhline(y=100, color='#ff6666', linewidth=0.8,
linestyle='--', alpha=0.5, label='100 BPM')
ax5.set_title('Heart Rate Over Time (RF Classification)',
color='white', fontsize=11, pad=8)
ax5.set_xlabel('Time (minutes)', color='#aaaaaa')
ax5.set_ylabel('Heart Rate (BPM)', color='#aaaaaa')
ax5.tick_params(colors='#aaaaaa')
ax5.spines['bottom'].set_color('#444444')
ax5.spines['left'].set_color('#444444')
ax5.spines['top'].set_visible(False)
ax5.spines['right'].set_visible(False)
ax5.grid(True, alpha=0.15, color='#555555')
ax5.legend(facecolor='#1a1a2e', edgecolor='#444444',
labelcolor='white', fontsize=8, markerscale=3)
# -------------------------------------------------------
# PANEL 6: RF vs CNN Agreement
# -------------------------------------------------------
ax6 = fig.add_subplot(gs[2, 2])
ax6.set_facecolor('#1a1a2e')
agree = (rf_predictions == cnn_predictions).sum()
disagree = (rf_predictions != cnn_predictions).sum()
total = len(rf_predictions)
ax6.pie(
[agree, disagree],
labels=[f'Agree\n{agree}', f'Disagree\n{disagree}'],
colors=['#2ecc71', '#e74c3c'],
explode=[0.05, 0.05],
autopct='%1.1f%%', startangle=90,
textprops={'color': 'white', 'fontsize': 10}
)
ax6.set_title(f'RF vs CNN Agreement\n({agree/total*100:.1f}% match)',
color='white', fontsize=11, pad=8)
# -------------------------------------------------------
# PANEL 7: ST Deviation Over Time
# -------------------------------------------------------
ax7 = fig.add_subplot(gs[3, :2])
ax7.set_facecolor('#1a1a2e')
for label, color in BEAT_COLORS.items():
mask = features_df['rf_predicted'] == label
if mask.sum() > 0:
ax7.scatter(time_minutes[mask],
features_df[mask]['st_deviation_mv'],
color=color, s=5, alpha=0.7, label=label)
ax7.axhline(y=0.1, color='#ffff00', linewidth=0.8,
linestyle='--', alpha=0.6, label='+0.1 mV')
ax7.axhline(y=-0.1, color='#ff6666', linewidth=0.8,
linestyle='--', alpha=0.6, label='-0.1 mV')
ax7.axhline(y=0, color='#ffffff', linewidth=0.5,
linestyle='-', alpha=0.3)
ax7.set_title('ST Deviation Over Time (Ischemia Indicator)',
color='white', fontsize=11, pad=8)
ax7.set_xlabel('Time (minutes)', color='#aaaaaa')
ax7.set_ylabel('ST Deviation (mV)', color='#aaaaaa')
ax7.tick_params(colors='#aaaaaa')
ax7.spines['bottom'].set_color('#444444')
ax7.spines['left'].set_color('#444444')
ax7.spines['top'].set_visible(False)
ax7.spines['right'].set_visible(False)
ax7.grid(True, alpha=0.15, color='#555555')
ax7.legend(facecolor='#1a1a2e', edgecolor='#444444',
labelcolor='white', fontsize=8, markerscale=3)
# -------------------------------------------------------
# PANEL 8: RR Interval Distribution
# -------------------------------------------------------
ax8 = fig.add_subplot(gs[3, 2])
ax8.set_facecolor('#1a1a2e')
for label, color in BEAT_COLORS.items():
mask = features_df['rf_predicted'] == label
if mask.sum() > 0:
ax8.hist(features_df[mask]['rr_interval_ms'],
bins=30, alpha=0.7,
color=color, label=label,
edgecolor='none')
ax8.set_title('RR Interval Distribution',
color='white', fontsize=11, pad=8)
ax8.set_xlabel('RR Interval (ms)', color='#aaaaaa')
ax8.set_ylabel('Count', color='#aaaaaa')
ax8.tick_params(colors='#aaaaaa')
ax8.spines['bottom'].set_color('#444444')
ax8.spines['left'].set_color('#444444')
ax8.spines['top'].set_visible(False)
ax8.spines['right'].set_visible(False)
ax8.grid(True, alpha=0.15, color='#555555')
ax8.legend(facecolor='#1a1a2e', edgecolor='#444444',
labelcolor='white', fontsize=9)
# -------------------------------------------------------
# SECTION 13: Save and Open Dashboard
# -------------------------------------------------------
output_path = r'D:\ecg_arr\step5_dashboard.png'
plt.savefig(output_path, dpi=150,
facecolor=fig.get_facecolor())
plt.close()
import subprocess
subprocess.Popen(['start', output_path], shell=True)
print(f"\nDashboard saved to : {output_path}")
print(f"\n{'='*55}")
print(f" ANALYSIS COMPLETE — Record {record_name}")
print(f"{'='*55}")
print(f" {verdict_icon} {verdict}")
print(f" {verdict_detail}")
print(f"{'='*55}")
print(f" Total beats : {len(features_df)}")
print(f" RF Accuracy : {rf_acc_str}")
print(f" CNN Accuracy : {cnn_acc_str}")
print(f" RF Risk : {rf_risk}")
print(f" CNN Risk : {cnn_risk}")
print(f" Model Agreement : {agree/total*100:.1f}%")
print(f"{'='*55}")
print(f"\nDashboard opening automatically...") |