Upload Colony_Analyzer_AI_zstack2_HF.py

Colony_Analyzer_AI_zstack2_HF.py

@@ -275,9 +275,9 @@ def main(args):
         cv2.putText(caption, 'No colonies detected.', (40, 40), cv2.FONT_HERSHEY_SIMPLEX, 1, (0, 0, 0), 3)
         cv2.imwrite('results.png', np.vstack(img, caption))
         colonies = pd.DataFrame({"Colony Number":[], 'Colony volume':[], "colony_area":[],'mean_pixel_value':[], "centroid":[], "necrotic_area":[],"percent_necrotic":[]})
-    	with pd.ExcelWriter('results.xlsx') as writer:
+        with pd.ExcelWriter('results.xlsx') as writer:
             colonies.to_excel(writer, sheet_name="Colony data", index=False)
-    	return(np.vstack((img, caption)), 'results.png', 'results.xlsx')
+        return(np.vstack((img, caption)), 'results.png', 'results.xlsx')
     counts = {}
     for x in range(len(files)):
         counts[x] = list(colonies["source"]).count(x)