Upload Colony_Analyzer_AI_zstack2_HF.py

Colony_Analyzer_AI_zstack2_HF.py

@@ -271,10 +271,10 @@ def main(args):
         img = np.array(files[0])
         if img.ndim == 2:
             img = cv2.cvtColor(img, cv2.COLOR_GRAY2BGR)
-    	caption = np.ones((150, 2048, 3), dtype=np.uint8) * 255  # Multiply by 255 to make it white
-    	cv2.putText(caption, 'No colonies detected.', (40, 40), cv2.FONT_HERSHEY_SIMPLEX, 1, (0, 0, 0), 3)
-    	cv2.imwrite('results.png', np.vstack(img, caption)))
-    	colonies = pd.DataFrame({"Colony Number":[], 'Colony volume':[], "colony_area":[],'mean_pixel_value':[], "centroid":[], "necrotic_area":[],"percent_necrotic":[]})
+        caption = np.ones((150, 2048, 3), dtype=np.uint8) * 255  # Multiply by 255 to make it white
+        cv2.putText(caption, 'No colonies detected.', (40, 40), cv2.FONT_HERSHEY_SIMPLEX, 1, (0, 0, 0), 3)
+        cv2.imwrite('results.png', np.vstack(img, caption)))
+        colonies = pd.DataFrame({"Colony Number":[], 'Colony volume':[], "colony_area":[],'mean_pixel_value':[], "centroid":[], "necrotic_area":[],"percent_necrotic":[]})
     	with pd.ExcelWriter('results.xlsx') as writer:
             colonies.to_excel(writer, sheet_name="Colony data", index=False)
     	return(np.vstack((img, caption)), 'results.png', 'results.xlsx')