Upload 9 files
Browse files- best_model/label_encoder.pkl +3 -0
- best_model/model.safetensors +3 -0
- best_model/requirements.txt +7 -0
- best_model/special_tokens_map.json +7 -0
- best_model/tokenizer_config.json +58 -0
- best_model/training_args.bin +3 -0
- best_model/vocab.txt +0 -0
- requirements.txt +7 -0
- streamlit_app.py +87 -0
best_model/label_encoder.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0b18fdaa0f8bb34ed643d679d56a1091fa6553747e5389ac4940640909dd8d57
|
| 3 |
+
size 3374
|
best_model/model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7af82a381817471667b142e55198705b2a852262e2353585e68c8f14547dcaff
|
| 3 |
+
size 439155212
|
best_model/requirements.txt
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
transformers>=4.30.0
|
| 2 |
+
altair
|
| 3 |
+
pandas
|
| 4 |
+
streamlit
|
| 5 |
+
torch
|
| 6 |
+
scikit-learn
|
| 7 |
+
requests
|
best_model/special_tokens_map.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"mask_token": "[MASK]",
|
| 4 |
+
"pad_token": "[PAD]",
|
| 5 |
+
"sep_token": "[SEP]",
|
| 6 |
+
"unk_token": "[UNK]"
|
| 7 |
+
}
|
best_model/tokenizer_config.json
ADDED
|
@@ -0,0 +1,58 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"added_tokens_decoder": {
|
| 3 |
+
"0": {
|
| 4 |
+
"content": "[PAD]",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false,
|
| 9 |
+
"special": true
|
| 10 |
+
},
|
| 11 |
+
"100": {
|
| 12 |
+
"content": "[UNK]",
|
| 13 |
+
"lstrip": false,
|
| 14 |
+
"normalized": false,
|
| 15 |
+
"rstrip": false,
|
| 16 |
+
"single_word": false,
|
| 17 |
+
"special": true
|
| 18 |
+
},
|
| 19 |
+
"101": {
|
| 20 |
+
"content": "[CLS]",
|
| 21 |
+
"lstrip": false,
|
| 22 |
+
"normalized": false,
|
| 23 |
+
"rstrip": false,
|
| 24 |
+
"single_word": false,
|
| 25 |
+
"special": true
|
| 26 |
+
},
|
| 27 |
+
"102": {
|
| 28 |
+
"content": "[SEP]",
|
| 29 |
+
"lstrip": false,
|
| 30 |
+
"normalized": false,
|
| 31 |
+
"rstrip": false,
|
| 32 |
+
"single_word": false,
|
| 33 |
+
"special": true
|
| 34 |
+
},
|
| 35 |
+
"103": {
|
| 36 |
+
"content": "[MASK]",
|
| 37 |
+
"lstrip": false,
|
| 38 |
+
"normalized": false,
|
| 39 |
+
"rstrip": false,
|
| 40 |
+
"single_word": false,
|
| 41 |
+
"special": true
|
| 42 |
+
}
|
| 43 |
+
},
|
| 44 |
+
"clean_up_tokenization_spaces": true,
|
| 45 |
+
"cls_token": "[CLS]",
|
| 46 |
+
"do_basic_tokenize": true,
|
| 47 |
+
"do_lower_case": true,
|
| 48 |
+
"extra_special_tokens": {},
|
| 49 |
+
"mask_token": "[MASK]",
|
| 50 |
+
"model_max_length": 512,
|
| 51 |
+
"never_split": null,
|
| 52 |
+
"pad_token": "[PAD]",
|
| 53 |
+
"sep_token": "[SEP]",
|
| 54 |
+
"strip_accents": null,
|
| 55 |
+
"tokenize_chinese_chars": true,
|
| 56 |
+
"tokenizer_class": "BertTokenizer",
|
| 57 |
+
"unk_token": "[UNK]"
|
| 58 |
+
}
|
best_model/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7119bd5212d6defb5990d470323a16b95a015f97af1161842fba1d73aa559185
|
| 3 |
+
size 5240
|
best_model/vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
requirements.txt
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
transformers>=4.30.0
|
| 2 |
+
altair
|
| 3 |
+
pandas
|
| 4 |
+
gradio
|
| 5 |
+
torch
|
| 6 |
+
scikit-learn
|
| 7 |
+
requests
|
streamlit_app.py
ADDED
|
@@ -0,0 +1,87 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
import sys
|
| 3 |
+
import streamlit as st
|
| 4 |
+
from transformers import BertTokenizer, BertForSequenceClassification # Burada BertTokenizer istifadə edirik
|
| 5 |
+
import torch
|
| 6 |
+
import pickle
|
| 7 |
+
import random
|
| 8 |
+
from collections import defaultdict
|
| 9 |
+
import requests
|
| 10 |
+
|
| 11 |
+
# GitHub-dan fayl yükləmək üçün funksiyanın təyin edilməsi
|
| 12 |
+
def download_label_encoder():
|
| 13 |
+
url = "https://github.com/AxundovReyal/nlp-disease/raw/main/label_encoder.pkl"
|
| 14 |
+
headers = {
|
| 15 |
+
"Authorization": f"token {os.getenv('GITHUB_TOKEN')}" # GitHub personal access token mühit dəyişəni olaraq qeyd olunmalı
|
| 16 |
+
}
|
| 17 |
+
response = requests.get(url, headers=headers)
|
| 18 |
+
|
| 19 |
+
if response.status_code == 200:
|
| 20 |
+
with open("label_encoder.pkl", "wb") as f:
|
| 21 |
+
f.write(response.content)
|
| 22 |
+
print("label_encoder.pkl faylı uğurla yükləndi.")
|
| 23 |
+
else:
|
| 24 |
+
raise Exception(f"Fayl yüklənə bilmədi, error kodu: {response.status_code}")
|
| 25 |
+
|
| 26 |
+
# Modelin və label_encoder-in yüklənməsi
|
| 27 |
+
@st.cache_resource
|
| 28 |
+
def load_model():
|
| 29 |
+
# GitHub-dan label_encoder yükləmək
|
| 30 |
+
download_label_encoder()
|
| 31 |
+
|
| 32 |
+
# Label encoder yüklənməsi əvvəlcə edilir
|
| 33 |
+
with open("label_encoder.pkl", "rb") as f:
|
| 34 |
+
label_encoder = pickle.load(f)
|
| 35 |
+
|
| 36 |
+
# Burada AutoTokenizer əvəzinə BertTokenizer istifadə edirik
|
| 37 |
+
tokenizer = BertTokenizer.from_pretrained('bert-base-uncased') # BERT Tokenizer
|
| 38 |
+
model = BertForSequenceClassification.from_pretrained('bert-base-uncased', num_labels=len(label_encoder.classes_)) # BERT Model
|
| 39 |
+
|
| 40 |
+
model.eval()
|
| 41 |
+
|
| 42 |
+
return tokenizer, model, label_encoder
|
| 43 |
+
|
| 44 |
+
tokenizer, model, label_encoder = load_model()
|
| 45 |
+
|
| 46 |
+
st.title("Disease NLP Classifier")
|
| 47 |
+
|
| 48 |
+
text = st.text_area("Enter your symptoms separated by commas (e.g. fever, cough, headache):")
|
| 49 |
+
|
| 50 |
+
def predict(text_input):
|
| 51 |
+
inputs = tokenizer(text_input, return_tensors="pt", truncation=True, padding=True, max_length=128)
|
| 52 |
+
with torch.no_grad():
|
| 53 |
+
outputs = model(**inputs)
|
| 54 |
+
probs = torch.nn.functional.softmax(outputs.logits, dim=-1).squeeze()
|
| 55 |
+
return probs
|
| 56 |
+
|
| 57 |
+
if st.button("Predict"):
|
| 58 |
+
if not text.strip():
|
| 59 |
+
st.warning("Please enter some symptoms!")
|
| 60 |
+
else:
|
| 61 |
+
symptoms = [s.strip() for s in text.split(",") if s.strip()]
|
| 62 |
+
if not symptoms:
|
| 63 |
+
st.warning("Please enter valid symptoms separated by commas!")
|
| 64 |
+
else:
|
| 65 |
+
agg_probs = defaultdict(float)
|
| 66 |
+
n_shuffles = 10
|
| 67 |
+
for _ in range(n_shuffles):
|
| 68 |
+
random.shuffle(symptoms)
|
| 69 |
+
shuffled_text = ", ".join(symptoms)
|
| 70 |
+
probs = predict(shuffled_text)
|
| 71 |
+
for i, p in enumerate(probs):
|
| 72 |
+
agg_probs[i] += p.item()
|
| 73 |
+
for k in agg_probs:
|
| 74 |
+
agg_probs[k] /= n_shuffles
|
| 75 |
+
top_3 = sorted(agg_probs.items(), key=lambda x: x[1], reverse=True)[:3]
|
| 76 |
+
|
| 77 |
+
st.subheader("Top 3 Predicted Diseases (averaged over shuffled inputs):")
|
| 78 |
+
for idx, prob in top_3:
|
| 79 |
+
label = label_encoder.classes_[idx] # Etiketləri doğru alırıq
|
| 80 |
+
st.write(f"**{label}** — Probability: `{prob * 100:.2f}%`")
|
| 81 |
+
|
| 82 |
+
# Render port düzəlişi
|
| 83 |
+
if __name__ == "__main__":
|
| 84 |
+
port = int(os.environ.get("PORT", 8501))
|
| 85 |
+
sys.argv = ["streamlit", "run", "streamlit_app.py", f"--server.port={port}", "--server.address=0.0.0.0"]
|
| 86 |
+
from streamlit.web.cli import main
|
| 87 |
+
sys.exit(main())
|