GENE / core /offtarget_engine.py
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Create offtarget_engine.py
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def mismatch(a, b):
return sum(x != y for x, y in zip(a, b))
def calculate_offtargets(genome, guide):
hits = 0
for i in range(len(genome) - len(guide)):
target = genome[i:i+len(guide)]
mm = mismatch(guide, target)
if mm <= 2:
hits += 1
return hits * 0.1