AssignmentWeekthree / wine_analysis_app.py
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import streamlit as st
import pandas as pd
import numpy as np
from sklearn.preprocessing import StandardScaler
from sklearn.decomposition import PCA
from sklearn.cluster import KMeans
from sklearn.metrics import silhouette_score
import matplotlib.pyplot as plt
import plotly.express as px
import plotly.graph_objects as go
# Set page configuration
st.set_page_config(
page_title="Wine Quality Analysis",
page_icon="🍷",
layout="wide"
)
# Title and description
st.title("🍷 Wine Quality Analysis")
st.markdown("""
This app analyzes the Wine Quality dataset using unsupervised learning techniques.
Explore the dataset, visualize PCA components, and see clustering results.
""")
# Load the dataset
@st.cache_data
def load_data():
wine_url = 'https://archive.ics.uci.edu/ml/machine-learning-databases/wine-quality/winequality-red.csv'
wine_data = pd.read_csv(wine_url, sep=';')
return wine_data
wine_data = load_data()
# Sidebar for navigation
st.sidebar.title("Navigation")
options = st.sidebar.radio("Select a section:",
["Dataset Overview", "PCA Analysis", "Clustering Analysis", "Cluster Insights"])
# Dataset Overview Section
if options == "Dataset Overview":
st.header("Dataset Overview")
st.subheader("First few rows of the dataset")
st.dataframe(wine_data.head())
st.subheader("Dataset Information")
col1, col2 = st.columns(2)
with col1:
st.write("**Shape:**", wine_data.shape)
st.write("**Columns:**", list(wine_data.columns))
with col2:
st.write("**Missing values:**")
missing_values = wine_data.isnull().sum()
st.write(missing_values)
st.subheader("Feature Distributions")
selected_feature = st.selectbox("Select a feature to visualize:", wine_data.columns[:-1])
fig = px.histogram(wine_data, x=selected_feature, title=f"Distribution of {selected_feature}")
st.plotly_chart(fig)
st.subheader("Quality Distribution")
quality_counts = wine_data['quality'].value_counts().sort_index()
fig = px.bar(x=quality_counts.index, y=quality_counts.values,
labels={'x': 'Quality Score', 'y': 'Count'},
title="Distribution of Wine Quality Scores")
st.plotly_chart(fig)
# PCA Analysis Section
elif options == "PCA Analysis":
st.header("Principal Component Analysis (PCA)")
# Prepare the data
features = wine_data.drop('quality', axis=1)
scaler = StandardScaler()
scaled_features = scaler.fit_transform(features)
# Perform PCA
pca = PCA()
pca_result = pca.fit_transform(scaled_features)
# Explained variance
explained_variance = np.cumsum(pca.explained_variance_ratio_)
# Plot explained variance
fig = go.Figure()
fig.add_trace(go.Scatter(x=list(range(1, len(explained_variance)+1)),
y=explained_variance,
mode='lines+markers',
name='Cumulative Explained Variance'))
fig.add_trace(go.Scatter(x=list(range(1, len(explained_variance)+1)),
y=[0.80]*len(explained_variance),
mode='lines',
name='80% Variance Threshold',
line=dict(dash='dash')))
fig.update_layout(title='PCA Explained Variance',
xaxis_title='Number of Principal Components',
yaxis_title='Cumulative Explained Variance')
st.plotly_chart(fig)
# Choose optimal components
optimal_components = np.argmax(explained_variance >= 0.80) + 1
st.write(f"**Optimal number of principal components:** {optimal_components} (explains ~80% of variance)")
# PCA component interpretation
pca_components = pd.DataFrame(pca.components_, columns=features.columns)
main_components = pca_components.iloc[:optimal_components]
st.subheader("Main Principal Components Interpretation")
for i, row in main_components.iterrows():
st.write(f"**PC{i+1}** represents major influence from:")
sorted_features = row.abs().sort_values(ascending=False)
top_features = list(sorted_features.items())[:3]
for feature, value in top_features:
st.write(f" - {feature} (weight {value:.2f})")
# Visualize PCA results
st.subheader("PCA Visualization")
# Select components to visualize
col1, col2 = st.columns(2)
with col1:
x_component = st.selectbox("X-axis component",
[f"PC{i+1}" for i in range(optimal_components)],
index=0)
with col2:
y_component = st.selectbox("Y-axis component",
[f"PC{i+1}" for i in range(optimal_components)],
index=1)
x_idx = int(x_component[2:]) - 1
y_idx = int(y_component[2:]) - 1
# Create scatter plot
fig = px.scatter(x=pca_result[:, x_idx], y=pca_result[:, y_idx],
color=wine_data['quality'],
labels={'x': x_component, 'y': y_component, 'color': 'Quality'},
title=f"{y_component} vs {x_component} Colored by Quality")
st.plotly_chart(fig)
# Clustering Analysis Section
elif options == "Clustering Analysis":
st.header("Clustering Analysis")
# Prepare the data
features = wine_data.drop('quality', axis=1)
scaler = StandardScaler()
scaled_features = scaler.fit_transform(features)
# Perform PCA for dimensionality reduction
pca = PCA(n_components=0.85)
pca_features = pca.fit_transform(scaled_features)
# Determine optimal number of clusters
inertia = []
silhouette = []
k_range = range(2, 11)
for k in k_range:
kmeans = KMeans(n_clusters=k, random_state=42)
labels = kmeans.fit_predict(pca_features)
inertia.append(kmeans.inertia_)
if k > 1: # Silhouette score requires at least 2 clusters
silhouette.append(silhouette_score(pca_features, labels))
else:
silhouette.append(0)
# Plot elbow and silhouette methods
col1, col2 = st.columns(2)
with col1:
fig = go.Figure()
fig.add_trace(go.Scatter(x=list(k_range), y=inertia, mode='lines+markers'))
fig.update_layout(title='Elbow Method',
xaxis_title='Number of Clusters',
yaxis_title='Inertia')
st.plotly_chart(fig)
with col2:
fig = go.Figure()
fig.add_trace(go.Scatter(x=list(k_range)[1:], y=silhouette[1:], mode='lines+markers'))
fig.update_layout(title='Silhouette Method',
xaxis_title='Number of Clusters',
yaxis_title='Silhouette Score')
st.plotly_chart(fig)
# Let user select number of clusters
k_optimal = st.slider("Select number of clusters:", min_value=2, max_value=10, value=3)
# Apply K-Means with selected clusters
kmeans = KMeans(n_clusters=k_optimal, random_state=42)
cluster_labels = kmeans.fit_predict(pca_features)
# Add cluster labels to the dataframe
wine_data_clustered = wine_data.copy()
wine_data_clustered['Cluster'] = cluster_labels
# Visualize clusters
st.subheader("Cluster Visualization")
# Create scatter plot of clusters
fig = px.scatter(x=pca_features[:, 0], y=pca_features[:, 1],
color=cluster_labels,
labels={'x': 'PC1', 'y': 'PC2', 'color': 'Cluster'},
title="Clusters Visualized in PCA Space")
st.plotly_chart(fig)
# Show cluster profiles
st.subheader("Cluster Profiles")
cluster_profiles = wine_data_clustered.groupby('Cluster').mean()
st.dataframe(cluster_profiles)
# Cluster Insights Section
elif options == "Cluster Insights":
st.header("Cluster Business Insights")
# Prepare the data (same as in clustering section)
features = wine_data.drop('quality', axis=1)
scaler = StandardScaler()
scaled_features = scaler.fit_transform(features)
pca = PCA(n_components=0.85)
pca_features = pca.fit_transform(scaled_features)
# Use 3 clusters as in the original analysis
kmeans = KMeans(n_clusters=3, random_state=42)
cluster_labels = kmeans.fit_predict(pca_features)
wine_data_clustered = wine_data.copy()
wine_data_clustered['Cluster'] = cluster_labels
# Define cluster insights (based on the original analysis)
cluster_insights = {
0: "Premium Taste Wines: High alcohol, balanced acidity, high quality",
1: "Sweet & Mild Wines: High sugar, low acidity, moderate quality",
2: "Sharp & Preservative-heavy Wines: High acidity, high sulfates, lower quality"
}
# Display insights
for cluster, desc in cluster_insights.items():
st.subheader(f"Cluster {cluster}")
st.write(desc)
# Show statistics for this cluster
cluster_data = wine_data_clustered[wine_data_clustered['Cluster'] == cluster]
st.write(f"Number of wines in this cluster: {len(cluster_data)}")
st.write(f"Average quality: {cluster_data['quality'].mean():.2f}")
# Show key characteristics
key_features = ['alcohol', 'residual sugar', 'volatile acidity', 'citric acid', 'sulphates']
cluster_means = cluster_data[key_features].mean()
fig = go.Figure()
fig.add_trace(go.Bar(x=key_features, y=cluster_means.values,
name=f"Cluster {cluster}"))
fig.update_layout(title=f"Key Features for Cluster {cluster}",
yaxis_title="Average Value")
st.plotly_chart(fig)
st.write("---")
import pandas as pd
df = pd.read_csv("wine_data.csv")