CellDreamer-API / celldreamer /config /evaluate_config.yml
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run_name: "Eval_CellDreamer_V1"
model_type: "celldreamer"
device: "mps"
data_path: "celldreamer/data/datasets"
checkpoint_path: "celldreamer/checkpoints/best.pth"
output_dir: "celldreamer/results"
output_filename: "test_metrics.json"
batch_size: 128
kl_scale: 0.01 # updated to match train_config to prevent posterior collapse
# MUST BE SAME AS TRAINIG CONFIG
num_genes: 2446
latent_dim: 50
rnn_dim: 32
learning_rate: 25e-6
enc_hidden_dims:
- 256
- 128
dec_hidden_dims:
- 128
- 256
weight_decay: 1e-3