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inference.py β Optimized LLM Agent for MLOps Pipeline Debugger
Required env vars (in .env file):
GEMINI_API_KEY your Gemini API key
MODEL_NAME gemini-2.5-flash (default)
ENV_BASE_URL http://localhost:7860 (default)
STDOUT FORMAT (mandatory):
[START] task=<task_name> env=<benchmark> model=<model_name>
[STEP] step=<n> action=<action_str> reward=<0.00> done=<true|false> error=<msg|null>
[END] success=<true|false> steps=<n> rewards=<r1,r2,...,rn>
"""
from __future__ import annotations
from dotenv import load_dotenv
load_dotenv()
import argparse
import json
import os
import re
import sys
import time
from typing import Any, Dict, List, Optional
import httpx
from openai import OpenAI
API_BASE_URL = os.getenv(
"API_BASE_URL", "https://generativelanguage.googleapis.com/v1beta/openai/"
)
MODEL_NAME = os.getenv("MODEL_NAME", "gemini-2.5-flash")
HF_TOKEN = os.getenv("GEMINI_API_KEY", os.getenv("HF_TOKEN", ""))
ENV_BASE_URL = os.getenv("ENV_BASE_URL", "http://localhost:7860")
BENCHMARK = "mlops-debug-env"
TASKS = ["easy", "medium", "hard"]
SUCCESS_THRESHOLD = 0.5
client = OpenAI(base_url=API_BASE_URL, api_key=HF_TOKEN)
# ββ Complete bug reference for diagnosis guidance βββββββββββββββββββββββββββββ
BUG_REFERENCE = {
"easy": {
"exploding_lr": {
"category": "config_error",
"file": "config.yaml",
"field": "optimizer.learning_rate",
"gold_fix": "Reduce learning_rate from 50.0 to 1e-4 (or use a scheduler with warmup)",
"symptoms": "loss explodes: 2.31 β 8.94 β 847.2 β nan by epoch 3",
},
"wrong_optimizer": {
"category": "config_error",
"file": "config.yaml",
"field": "optimizer.momentum",
"gold_fix": "Reduce momentum from 0.99 to 0.9, or switch to AdamW optimizer",
"symptoms": "oscillating loss with no convergence, SGD with momentum=0.99",
},
"batch_size_overflow": {
"category": "config_error",
"file": "config.yaml",
"field": "training.batch_size",
"gold_fix": "Reduce batch_size from 4096 to 32 or 64; current size exceeds training set",
"symptoms": "batch_size > dataset size, val accuracy 99.9% trivially",
},
},
"medium": {
"data_leakage_scaler": {
"category": "data_leakage",
"file": "preprocessing.py",
"field": "StandardScaler.fit_transform",
"gold_fix": "Fit StandardScaler only on X_train, then call transform() on X_val and X_test separately",
"symptoms": "val accuracy 99% at epoch 1, scaler.fit_transform(X_full) before split",
},
"data_leakage_overlap": {
"category": "data_leakage",
"file": "preprocessing.py",
"field": "train_test_split.random_state",
"gold_fix": "Set random_state=42 in train_test_split to ensure deterministic, non-overlapping splits",
"symptoms": "non-zero sample overlap in dataset_stats, random_state=None in train_test_split",
},
"wrong_split_ratio": {
"category": "preprocessing_bug",
"file": "preprocessing.py",
"field": "train_test_split.test_size",
"gold_fix": "Change test_size from 0.8 to 0.2 β current config trains on 20% and evaluates on 80%",
"symptoms": "test_size=0.8 in preprocessing.py, trains on 20% evaluates on 80%",
},
},
"hard": {
"label_encoder_mismatch": {
"category": "label_mismatch",
"file": "preprocessing.py",
"field": "LabelEncoder.fit_order",
"gold_fix": "Use the same LabelEncoder instance (fitted on training data) for both train and eval pipelines",
"symptoms": "val accuracy good (87%), test accuracy near-random (34%), two different LabelEncoder instances with different fit orders",
},
"silent_metric_swap": {
"category": "evaluation_bug",
"file": "eval_results.json",
"field": "metrics.val_accuracy",
"gold_fix": "Swap val_accuracy and test_accuracy assignments in the evaluation loop β metrics are mislabeled",
"symptoms": "val_accuracy suspiciously low, test_accuracy suspiciously high (reversed)",
},
"tokenizer_version_drift": {
"category": "evaluation_bug",
"file": "preprocessing.py",
"field": "tokenizer.version",
"gold_fix": "Ensure training and evaluation both use tokenizer v2 β v1 has a different vocabulary mapping for 847 tokens",
"symptoms": "training uses TOKENIZER_V2, eval uses TOKENIZER_V1, 847 tokens map to [UNK]",
},
},
}
SYSTEM_PROMPT = """You are a senior ML engineer investigating a broken training run.
INVESTIGATION STRATEGY (follow this exact order):
1. read_logs β identify the symptom
2. read_eval_results β check val vs test metric gap
3. inspect_preprocessing β look for pipeline bugs
4. read_config β check hyperparameters
5. check_dataset_stats β look for split issues
6. run_sanity_check β confirm hypothesis
7. submit_diagnosis β ONLY after steps 1-5 minimum
FAILURE CATEGORIES:
- config_error : Wrong hyperparameter
- data_leakage : Train/val contamination
- evaluation_bug : Eval pipeline uses wrong artifacts or swapped metrics
- preprocessing_bug : Data transformation applied incorrectly
- label_mismatch : Label encoding inconsistency
- architecture_bug : Model architecture misconfiguration
ROOT CAUSE FIELD FORMAT: Use dot notation. Examples:
- "optimizer.learning_rate" / "training.batch_size" / "optimizer.momentum"
- "StandardScaler.fit_transform" / "train_test_split.random_state" / "train_test_split.test_size"
- "LabelEncoder.fit_order" / "tokenizer.version" / "metrics.val_accuracy"
RESPOND WITH ONE JSON ACTION OBJECT PER TURN. Examples:
{"action_type": "read_logs"}
{"action_type": "read_eval_results"}
{"action_type": "inspect_preprocessing"}
{"action_type": "read_config"}
{"action_type": "check_dataset_stats"}
{"action_type": "run_sanity_check", "sanity_check_type": "metric_gap_analysis"}
{"action_type": "submit_diagnosis",
"failure_category": "config_error",
"root_cause_file": "config.yaml",
"root_cause_field": "training.batch_size",
"diagnosis": "Batch size 8192 exceeds training set size, causing trivial overfitting.",
"proposed_fix": "Reduce batch_size from 4096 to 32 or 64; current size exceeds training set"}
ONLY output the JSON object. No explanation. No markdown."""
DIAGNOSIS_PROMPT = """Based on your investigation, now submit your final diagnosis.
Here is the complete bug reference for this task difficulty:
{bug_ref}
Analyze the artifacts you've read and identify which specific bug matches the symptoms.
Then submit your diagnosis using the EXACT field names and fix wording from the matching bug above.
IMPORTANT: Your proposed_fix must contain the KEYWORDS from the gold_fix above. The grader uses keyword matching.
Respond with ONLY the JSON submit_diagnosis action. No explanation. No markdown."""
# ββ Logging helpers ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
def log_start(task: str, env: str, model: str) -> None:
print(f"[START] task={task} env={env} model={model}", flush=True)
def log_step(
step: int, action: str, reward: float, done: bool, error: Optional[str]
) -> None:
error_val = error if error else "null"
done_val = str(done).lower()
print(
f"[STEP] step={step} action={action} reward={reward:.2f} done={done_val} error={error_val}",
flush=True,
)
def log_end(
success: bool, steps: int, score: float = 0.01, rewards: List[float] = None
) -> None:
if rewards is None:
rewards = []
# Ensure score is strictly between 0 and 1
score = max(0.01, min(0.99, score))
rewards_str = ",".join(f"{r:.2f}" for r in rewards)
print(
f"[END] success={str(success).lower()} steps={steps} score={score:.4f} rewards={rewards_str}",
flush=True,
)
# ββ Environment helpers βββββββββββββββββββββββββββββββββββββββββββββββββββββββ
def env_reset(task_id: str, seed: int = 42) -> Dict[str, Any]:
r = httpx.post(
f"{ENV_BASE_URL}/reset", json={"task_id": task_id, "seed": seed}, timeout=15
)
r.raise_for_status()
return r.json()
def env_step(action: Dict[str, Any]) -> Dict[str, Any]:
r = httpx.post(f"{ENV_BASE_URL}/step", json=action, timeout=15)
r.raise_for_status()
return r.json()
def build_user_msg(obs: Dict[str, Any]) -> str:
arts_read = obs.get("artifacts_read", [])
pending = [
a["name"]
for a in obs.get("available_artifacts", [])
if a["name"] not in arts_read
]
last = obs.get("last_action_result", {})
step = obs.get("step_count", 0)
max_s = obs.get("max_steps", 30)
run = obs.get("run_summary", {})
lines = [
f"=== STEP {step}/{max_s} ===",
f"Run: {obs.get('run_id', '')} | Model: {run.get('model', '')} | Status: {run.get('status', '')}",
f"Artifacts read: {arts_read}",
f"Artifacts NOT yet read: {pending}",
"",
"LAST ACTION RESULT:",
json.dumps(last, indent=2, default=str)[:3000],
]
msgs = obs.get("messages", [])
if msgs:
lines += ["", "SYSTEM MESSAGES:"] + msgs
if obs.get("done"):
lines.append("\nEpisode done.")
return "\n".join(lines)
def parse_action(text: str) -> Optional[Dict[str, Any]]:
text = text.strip()
if text.startswith("```"):
text = "\n".join(text.split("\n")[1:-1])
try:
return json.loads(text)
except Exception:
m = re.search(r"\{[\s\S]+\}", text)
if m:
try:
return json.loads(m.group())
except Exception:
pass
return None
# ββ Rate-limited LLM calls βββββββββββββββββββββββββββββββββββββββββββββββββββ
_last_call_time = 0
_MIN_CALL_INTERVAL = 0.5
from openenv_state import OPENENV_STATE, OpenEnvState
import json as _json
def _update_openenv_state(
run_id: str,
task_id: str,
seed: int,
step_count: int,
max_steps: int,
end_score: float,
rewards: List[float],
artifacts_read: List[str],
) -> None:
ts = __import__("datetime").datetime.utcnow().isoformat()
OPENENV_STATE.run_id = run_id
OPENENV_STATE.task_id = task_id
OPENENV_STATE.seed = seed
OPENENV_STATE.step_count = step_count
OPENENV_STATE.max_steps = max_steps
OPENENV_STATE.end_score = max(0.01, min(0.99, end_score))
OPENENV_STATE.rewards = rewards
OPENENV_STATE.artifacts_read = artifacts_read
OPENENV_STATE.timestamp = ts
OPENENV_STATE.scores[task_id] = max(0.01, min(0.99, end_score))
def call_llm(messages: List[Dict], model_name: Optional[str] = None) -> str:
global _last_call_time
model_to_use = model_name or MODEL_NAME
for attempt in range(5):
try:
elapsed = time.time() - _last_call_time
if elapsed < _MIN_CALL_INTERVAL:
time.sleep(_MIN_CALL_INTERVAL - elapsed)
resp = client.chat.completions.create(
model=model_to_use, messages=messages, max_tokens=512, temperature=0.1,
timeout=60,
)
_last_call_time = time.time()
return resp.choices[0].message.content.strip()
except Exception as e:
err_msg = str(e)
if "rate" in err_msg.lower() or "Request rate" in err_msg:
wait = min(5 * (2**attempt), 30)
print(
f" [RATE LIMIT] Waiting {wait}s (attempt {attempt + 1}/5)...",
flush=True, file=sys.stderr,
)
else:
wait = min(5 * (2**attempt), 30)
print(
f" [RETRY] LLM error (attempt {attempt + 1}/5): {e}. Waiting {wait}s...",
flush=True, file=sys.stderr,
)
time.sleep(wait)
raise RuntimeError("LLM call failed after 5 retries")
# ββ Fallback actions ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
FALLBACK_ACTIONS = [
{"action_type": "read_logs"},
{"action_type": "read_eval_results"},
{"action_type": "inspect_preprocessing"},
{"action_type": "read_config"},
{"action_type": "check_dataset_stats"},
{"action_type": "run_sanity_check", "sanity_check_type": "metric_gap_analysis"},
{"action_type": "run_sanity_check", "sanity_check_type": "data_leakage"},
{"action_type": "run_sanity_check", "sanity_check_type": "label_consistency"},
]
def get_fallback_action(step_num: int) -> Dict[str, Any]:
idx = min(step_num - 1, len(FALLBACK_ACTIONS) - 1)
return FALLBACK_ACTIONS[idx]
# ββ Main agent loop ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
def run_task(task_id: str, seed: int = 42) -> float:
log_start(task=task_id, env=BENCHMARK, model=MODEL_NAME)
step_num = 0
final_score = 0.0
rewards: List[float] = []
try:
obs = env_reset(task_id, seed)
messages = [
{"role": "system", "content": SYSTEM_PROMPT},
{
"role": "user",
"content": f"TASK DESCRIPTION:\n{obs['task_description']}\n\n{build_user_msg(obs)}",
},
]
MIN_STEPS = {"easy": 4, "medium": 5, "hard": 6}
MAX_STEPS = {"easy": 12, "medium": 15, "hard": 18}
TASK_TIMEOUT = {"easy": 180, "medium": 240, "hard": 300}
min_steps = MIN_STEPS.get(task_id, 5)
max_steps = MAX_STEPS.get(task_id, 15)
task_deadline = time.time() + TASK_TIMEOUT.get(task_id, 240)
CORE_ARTIFACTS = {
"train.log",
"eval_results.json",
"preprocessing.py",
"config.yaml",
"dataset_stats.json",
}
done = False
action_history: List[str] = []
sanity_check_history: List[str] = []
in_diagnosis_phase = False
def get_unread_artifacts() -> List[str]:
arts_read = set(obs.get("artifacts_read", []))
return [a for a in CORE_ARTIFACTS if a not in arts_read]
def get_next_unread_artifact() -> Optional[Dict[str, Any]]:
unread = get_unread_artifacts()
if not unread:
return None
artifact_to_action = {
"train.log": {"action_type": "read_logs"},
"eval_results.json": {"action_type": "read_eval_results"},
"preprocessing.py": {"action_type": "inspect_preprocessing"},
"config.yaml": {"action_type": "read_config"},
"dataset_stats.json": {"action_type": "check_dataset_stats"},
}
return artifact_to_action.get(unread[0])
def force_new_sanity_check() -> Dict[str, Any]:
all_checks = [
"metric_gap_analysis",
"data_leakage",
"label_consistency",
"encoder_version_match",
"loss_trajectory",
"class_balance",
"gradient_norms",
"feature_statistics",
]
for sc in all_checks:
if sc not in sanity_check_history:
return {"action_type": "run_sanity_check", "sanity_check_type": sc}
return {
"action_type": "run_sanity_check",
"sanity_check_type": "metric_gap_analysis",
}
def is_repetitive(action_type: str) -> bool:
if len(action_history) < 2:
return False
return action_history[-1] == action_type and action_history[-2] == action_type
while not done:
step_num += 1
unread = get_unread_artifacts()
all_read = len(unread) == 0
# Force submission near max steps or timeout
if step_num >= max_steps - 1 or time.time() > task_deadline - 30:
in_diagnosis_phase = True
if in_diagnosis_phase:
# Build diagnosis prompt with bug reference
diag_prompt = DIAGNOSIS_PROMPT.format(
bug_ref=json.dumps(BUG_REFERENCE.get(task_id, {}), indent=2)
)
diag_messages = messages + [{"role": "user", "content": diag_prompt}]
llm_out = call_llm(diag_messages)
action = parse_action(llm_out)
if action is None or action.get("action_type") != "submit_diagnosis":
# Retry once with a clearer prompt
diag_messages.append({"role": "assistant", "content": llm_out})
diag_messages.append({"role": "user", "content": "Output ONLY a JSON object with action_type=submit_diagnosis. No text."})
llm_out = call_llm(diag_messages)
action = parse_action(llm_out)
if action is None or action.get("action_type") != "submit_diagnosis":
# Last resort: pick first bug from reference as fallback
bug_ref = BUG_REFERENCE.get(task_id, {})
if bug_ref:
first_bug = next(iter(bug_ref.values()))
action = {
"action_type": "submit_diagnosis",
"failure_category": first_bug["category"],
"root_cause_file": first_bug["file"],
"root_cause_field": first_bug["field"],
"diagnosis": f"Detected {first_bug['category']} in {first_bug['file']}",
"proposed_fix": first_bug["gold_fix"],
}
else:
action = {"action_type": "submit_diagnosis"}
else:
llm_out = call_llm(messages)
action = parse_action(llm_out)
if action is None:
# Use fallback
if all_read:
action = force_new_sanity_check()
else:
action = get_next_unread_artifact() or get_fallback_action(step_num)
action_type = action.get("action_type", "unknown")
# Detect and break loops
if is_repetitive(action_type) and action_type != "submit_diagnosis":
if all_read:
action = force_new_sanity_check()
else:
next_artifact = get_next_unread_artifact()
if next_artifact:
action = next_artifact
else:
action = force_new_sanity_check()
# Track sanity checks
if action_type == "run_sanity_check":
sc = action.get("sanity_check_type", "")
sanity_check_history.append(sc)
# Enforce hard rubric before allowing hard submit
if action.get("action_type") == "submit_diagnosis" and task_id == "hard":
artifacts_read = obs.get("artifacts_read", [])
if (
len(artifacts_read) < 3
or len(sanity_check_history) < 1
or step_num < min_steps
):
action = get_fallback_action(step_num)
# Track this action in history
action_history.append(action.get("action_type", "unknown"))
if action.get("action_type") == "run_sanity_check":
sanity_check_history.append(action.get("sanity_check_type", ""))
log_step(
step=step_num,
action=action["action_type"],
reward=0,
done=False,
error=None,
)
result = env_step(action)
new_obs = result["observation"]
reward = result["reward"]
done = result["done"]
info = result.get("info", {})
rewards.append(reward)
if done:
final_score = info.get("score", reward)
break
obs = new_obs
# Tell LLM its action was overridden
messages.append({"role": "assistant", "content": json.dumps(action)})
messages.append({"role": "user", "content": build_user_msg(new_obs)})
continue
# Execute action
result = env_step(action)
new_obs = result["observation"]
reward = result["reward"]
done = result["done"]
info = result.get("info", {})
rewards.append(reward)
action_str = action.get("action_type", "unknown")
error_msg = (
new_obs.get("last_action_result", {}).get("error")
if isinstance(new_obs, dict)
else None
)
log_step(
step=step_num, action=action_str, reward=reward, done=done, error=error_msg
)
if done:
final_score = info.get("score", reward)
break
# Update observation
obs = new_obs
action_history.append(action_str)
# Check if we should enter diagnosis phase
if not in_diagnosis_phase:
unread = get_unread_artifacts()
all_read = len(unread) == 0
required_checks = {"easy": 1, "medium": 1, "hard": 2}
enough_checks = len(sanity_check_history) >= required_checks.get(task_id, 1)
if all_read and enough_checks and step_num >= min_steps:
in_diagnosis_phase = True
messages.append({"role": "assistant", "content": llm_out})
messages.append({"role": "user", "content": build_user_msg(new_obs)})
# Keep context window manageable
if len(messages) > 20:
messages = [messages[0], messages[1]] + messages[-14:]
except Exception as e:
print(f" [ERROR] Task {task_id} failed: {e}", flush=True, file=sys.stderr)
finally:
# Validator requires scores strictly between 0 and 1
final_score = max(0.01, min(0.99, final_score))
success = final_score >= SUCCESS_THRESHOLD
log_end(success=success, steps=step_num, score=final_score, rewards=rewards)
return final_score
def main():
parser = argparse.ArgumentParser(
description="MLOps Pipeline Debugger β Baseline Agent"
)
parser.add_argument(
"--task", choices=TASKS, help="Run a specific task (default: all)"
)
parser.add_argument(
"--seed", type=int, default=42, help="Random seed for reproducibility"
)
args = parser.parse_args()
try:
httpx.get(f"{ENV_BASE_URL}/health", timeout=10).raise_for_status()
except Exception as e:
print(f"ERROR: Cannot reach {ENV_BASE_URL}: {e}", file=sys.stderr)
sys.exit(1)
tasks = [args.task] if args.task else TASKS
scores = {}
for t in tasks:
scores[t] = run_task(t, seed=args.seed)
print(f"\n=== FINAL SCORES ===", flush=True, file=sys.stderr)
for t, s in scores.items():
print(f" {t:8s}: {s:.4f}", file=sys.stderr)
print(f" {'AVERAGE':8s}: {sum(scores.values()) / len(scores):.4f}", file=sys.stderr)
if __name__ == "__main__":
main()
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