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Update api/routes.py
Browse files- api/routes.py +20 -61
api/routes.py
CHANGED
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@@ -128,90 +128,49 @@ async def list_patients(current_user: dict = Depends(get_current_user)):
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"full_name": p.get("full_name", ""),
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"date_of_birth": p.get("date_of_birth"),
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"gender": p.get("gender", ""),
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"notes": p.get("notes",
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})
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return patients
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# --- IMPORT FROM
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@router.post("/ehr/fetch-from-api")
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async def fetch_and_store_patients_from_fhir():
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base_url = "https://hapi.fhir.org/baseR4"
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patient_url = f"{base_url}/Patient?_count=50"
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valid_patients = []
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try:
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async with httpx.AsyncClient(timeout=30.0) as client:
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if patient_response.status_code != 200:
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raise HTTPException(status_code=502, detail="Failed to fetch patients")
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fhir_id = resource.get("id")
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name = resource.get("name", [{}])[0]
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full_name = f"{name.get('given', [''])[0]} {name.get('family', '')}".strip()
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gender = resource.get("gender")
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birth_date = resource.get("birthDate")
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city = address_data.get("city", "")
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state = address_data.get("state", "")
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zip_code = address_data.get("postalCode", "")
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# Skip incomplete patients
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if not (fhir_id and full_name and gender and birth_date and address and city and state and zip_code):
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continue
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# Fetch encounters for this patient
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async with httpx.AsyncClient(timeout=30.0) as client:
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encounter_response = await client.get(f"{base_url}/Encounter?subject=Patient/{fhir_id}")
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if encounter_response.status_code != 200:
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continue
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encounter_entries = encounter_response.json().get("entry", [])
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notes = []
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for enc in encounter_entries:
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enc_resource = enc.get("resource", {})
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for n in enc_resource.get("note", []):
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if n.get("text"):
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notes.append(n["text"])
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if not encounter_entries:
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continue # ✅ Skip if no notes
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valid_patients.append({
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"fhir_id": fhir_id,
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"full_name": full_name,
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"gender": gender,
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"date_of_birth":
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"address": address,
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"city": city,
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"state": state,
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"zip":
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"notes": notes,
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"created_at": datetime.utcnow()
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})
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if not valid_patients:
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return {"message": "No
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result = await patients_collection.insert_many(valid_patients)
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return {
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"message": "Imported patients with notes",
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"count": len(result.inserted_ids)
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}
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except Exception as e:
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raise HTTPException(status_code=500, detail=str(e))
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@router.get("/ehr/fhir-patients")
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async def list_fhir_patients():
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cursor = patients_collection.find({"fhir_id": {"$exists": True}})
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"full_name": p.get("full_name", ""),
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"date_of_birth": p.get("date_of_birth"),
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"gender": p.get("gender", ""),
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"notes": p.get("notes", [])
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})
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return patients
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# --- IMPORT FROM FHIR (Switch to mock source with full data) ---
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@router.post("/ehr/fetch-from-api")
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async def fetch_and_store_patients_from_fhir():
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try:
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async with httpx.AsyncClient(timeout=30.0) as client:
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response = await client.get("https://txagent-medical-data.s3.amazonaws.com/fhir_mock_patients.json")
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if response.status_code != 200:
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raise HTTPException(status_code=502, detail="Failed to fetch mock FHIR patients")
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raw_data = response.json()
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valid_patients = []
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for resource in raw_data:
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if not all(k in resource for k in ("fhir_id", "full_name", "gender", "date_of_birth", "address", "city", "state", "zip", "notes")):
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continue
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valid_patients.append({
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"fhir_id": resource["fhir_id"],
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"full_name": resource["full_name"],
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"gender": resource["gender"],
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"date_of_birth": resource["date_of_birth"],
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"address": resource["address"],
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"city": resource["city"],
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"state": resource["state"],
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"zip": resource["zip"],
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"notes": resource["notes"],
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"created_at": datetime.utcnow()
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})
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if not valid_patients:
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return {"message": "No complete patients in mock file."}
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result = await patients_collection.insert_many(valid_patients)
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return {"message": "Mock FHIR patients imported", "count": len(result.inserted_ids)}
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except Exception as e:
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raise HTTPException(status_code=500, detail=str(e))
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@router.get("/ehr/fhir-patients")
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async def list_fhir_patients():
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cursor = patients_collection.find({"fhir_id": {"$exists": True}})
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