Update ui/ui_core.py
Browse files- ui/ui_core.py +13 -19
ui/ui_core.py
CHANGED
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@@ -1,30 +1,22 @@
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-
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import sys
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import os
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# β
Add src to Python path
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sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "src")))
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from txagent.txagent import TxAgent
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import pandas as pd
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import pdfplumber
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import gradio as gr
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def extract_structured_text_from_csv(file_path):
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try:
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df = pd.read_csv(file_path)
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relevant_columns = [
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"Booking Number", "Form Name", "Form Item",
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"Item Response", "Interviewer", "Interview Date"
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]
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df = df[[col for col in relevant_columns if col in df.columns]]
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return df.to_string(index=False)
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except Exception as e:
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return f"Error parsing CSV: {e}"
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def extract_structured_text_from_pdf(file_path):
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extracted = []
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try:
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with pdfplumber.open(file_path) as pdf:
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@@ -38,10 +30,9 @@ def extract_structured_text_from_pdf(file_path):
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except Exception as e:
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return f"Error parsing PDF: {e}"
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-
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def create_ui(agent: TxAgent):
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with gr.Blocks(theme=gr.themes.Soft()) as demo:
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gr.Markdown("<h1 style='text-align: center;'
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chatbot = gr.Chatbot(label="TxAgent", height=600, type="messages")
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file_upload = gr.File(label="Upload Medical File", file_types=[".pdf", ".txt", ".docx", ".jpg", ".png", ".csv"], file_count="multiple")
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@@ -51,9 +42,9 @@ def create_ui(agent: TxAgent):
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def handle_chat(message, history, conversation, uploaded_files):
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context = (
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"You are a clinical AI reviewing
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"
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"
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)
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if uploaded_files:
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@@ -61,9 +52,12 @@ def create_ui(agent: TxAgent):
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for file in uploaded_files:
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path = file.name
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if path.endswith(".csv"):
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extracted_text +=
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elif path.endswith(".pdf"):
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extracted_text +=
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message = f"{context}\n\n---\n{extracted_text.strip()}\n---\n\nNow reason what the doctor might have missed."
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generator = agent.run_gradio_chat(
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@@ -88,4 +82,4 @@ def create_ui(agent: TxAgent):
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["Upload the files"],
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], inputs=message_input)
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return demo
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import sys
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import os
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# β
Add src to Python path
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sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "src")))
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from txagent.txagent import TxAgent
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import pandas as pd
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import pdfplumber
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import gradio as gr
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def extract_all_text_from_csv(file_path):
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try:
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df = pd.read_csv(file_path)
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return df.to_string(index=False)
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except Exception as e:
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return f"Error parsing CSV: {e}"
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def extract_all_text_from_pdf(file_path):
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extracted = []
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try:
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with pdfplumber.open(file_path) as pdf:
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except Exception as e:
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return f"Error parsing PDF: {e}"
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def create_ui(agent: TxAgent):
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with gr.Blocks(theme=gr.themes.Soft()) as demo:
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gr.Markdown("<h1 style='text-align: center;'>π TxAgent: Therapeutic Reasoning</h1>")
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chatbot = gr.Chatbot(label="TxAgent", height=600, type="messages")
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file_upload = gr.File(label="Upload Medical File", file_types=[".pdf", ".txt", ".docx", ".jpg", ".png", ".csv"], file_count="multiple")
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def handle_chat(message, history, conversation, uploaded_files):
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context = (
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"You are a clinical AI reviewing medical interview or form data. "
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"Analyze the extracted content and reason step-by-step about what the doctor could have missed. "
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"Don't answer yet β just reason."
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)
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if uploaded_files:
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for file in uploaded_files:
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path = file.name
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if path.endswith(".csv"):
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extracted_text += extract_all_text_from_csv(path) + "\n"
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elif path.endswith(".pdf"):
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extracted_text += extract_all_text_from_pdf(path) + "\n"
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else:
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extracted_text += f"(Uploaded file: {os.path.basename(path)})\n"
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message = f"{context}\n\n---\n{extracted_text.strip()}\n---\n\nNow reason what the doctor might have missed."
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generator = agent.run_gradio_chat(
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["Upload the files"],
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], inputs=message_input)
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return demo
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