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Update app.py
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app.py
CHANGED
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@@ -552,14 +552,11 @@ async def analyze_clinical_report(
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"""
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Analyze a clinical patient report from an uploaded file.
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-
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Parameters:
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- file: Uploaded clinical report file (PDF, TXT, DOCX)
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- patient_id: Optional patient ID to associate with this report
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- temperature: Controls randomness of response (0.1-1.0)
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- max_new_tokens: Maximum length of response
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-
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Returns structured analysis of the patient report.
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"""
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try:
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# Validate file type
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@@ -579,7 +576,7 @@ async def analyze_clinical_report(
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# Read file content
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file_content = await file.read()
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# Extract text
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if content_type == 'application/pdf':
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text = extract_text_from_pdf(file_content)
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elif content_type == 'text/plain':
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@@ -587,6 +584,8 @@ async def analyze_clinical_report(
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elif content_type == 'application/vnd.openxmlformats-officedocument.wordprocessingml.document':
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doc = Document(io.BytesIO(file_content))
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text = "\n".join([para.text for para in doc.paragraphs])
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# Clean and validate text
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text = clean_text_response(text)
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@@ -604,7 +603,13 @@ async def analyze_clinical_report(
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file_content=file_content
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)
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#
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return JSONResponse(content=jsonable_encoder({
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"status": "success",
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"analysis": analysis,
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@@ -621,6 +626,8 @@ async def analyze_clinical_report(
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status_code=500,
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detail=f"Failed to analyze report: {str(e)}"
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)
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if __name__ == "__main__":
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import uvicorn
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uvicorn.run(app, host="0.0.0.0", port=8000)
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):
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"""
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Analyze a clinical patient report from an uploaded file.
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Parameters:
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- file: Uploaded clinical report file (PDF, TXT, DOCX)
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- patient_id: Optional patient ID to associate with this report
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- temperature: Controls randomness of response (0.1-1.0)
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- max_new_tokens: Maximum length of response
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"""
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try:
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# Validate file type
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# Read file content
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file_content = await file.read()
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# Extract text from file
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if content_type == 'application/pdf':
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text = extract_text_from_pdf(file_content)
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elif content_type == 'text/plain':
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elif content_type == 'application/vnd.openxmlformats-officedocument.wordprocessingml.document':
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doc = Document(io.BytesIO(file_content))
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text = "\n".join([para.text for para in doc.paragraphs])
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else:
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raise HTTPException(status_code=400, detail="Unsupported file type")
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# Clean and validate text
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text = clean_text_response(text)
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file_content=file_content
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)
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# Manually convert ObjectId and timestamp if needed
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if "_id" in analysis and isinstance(analysis["_id"], ObjectId):
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analysis["_id"] = str(analysis["_id"])
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if "timestamp" in analysis and isinstance(analysis["timestamp"], datetime):
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analysis["timestamp"] = analysis["timestamp"].isoformat()
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# Return response using jsonable_encoder
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return JSONResponse(content=jsonable_encoder({
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"status": "success",
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"analysis": analysis,
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status_code=500,
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detail=f"Failed to analyze report: {str(e)}"
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)
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if __name__ == "__main__":
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import uvicorn
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uvicorn.run(app, host="0.0.0.0", port=8000)
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