Update app.py

app.py

@@ -1,8 +1,8 @@
 import uvicorn
 from fastapi import FastAPI
 from fastapi.middleware.cors import CORSMiddleware
-from config import setup_app
-from endpoints import router
+from config import setup_app, agent, logger, patients_collection, analysis_collection
+from endpoints import create_router
 
 # Create the FastAPI app
 app = FastAPI(title="TxAgent API", version="2.6.0")
@@ -16,11 +16,12 @@ app.add_middleware(
     allow_headers=["*"]
 )
 
-# Include the router with endpoints
-app.include_router(router)
-
 # Setup the app (e.g., initialize globals, startup event)
 setup_app(app)
 
+# Create and include the router with dependencies
+router = create_router(agent, logger, patients_collection, analysis_collection)
+app.include_router(router)
+
 if __name__ == "__main__":
     uvicorn.run(app, host="0.0.0.0", port=8000)