Spaces:
Runtime error
Runtime error
Update app.py
Browse files
app.py
CHANGED
|
@@ -87,8 +87,12 @@ async def startup_event():
|
|
| 87 |
global agent
|
| 88 |
try:
|
| 89 |
logger.info("Initializing TxAgent...")
|
|
|
|
|
|
|
|
|
|
|
|
|
| 90 |
agent = TxAgent(
|
| 91 |
-
model_name="mims-harvard/TxAgent-T1-Llama
|
| 92 |
rag_model_name="mims-harvard/ToolRAG-T1-GTE-Qwen2-1.5B",
|
| 93 |
tool_files_dict={},
|
| 94 |
enable_finish=True,
|
|
@@ -96,17 +100,23 @@ async def startup_event():
|
|
| 96 |
force_finish=True,
|
| 97 |
enable_checker=True,
|
| 98 |
step_rag_num=4,
|
| 99 |
-
seed=100
|
|
|
|
| 100 |
)
|
| 101 |
agent.init_model()
|
| 102 |
logger.info("TxAgent initialized successfully")
|
| 103 |
except Exception as e:
|
| 104 |
logger.error(f"Failed to initialize agent: {str(e)}")
|
| 105 |
-
|
|
|
|
| 106 |
|
| 107 |
@app.post("/chat")
|
| 108 |
async def chat_endpoint(request: ChatRequest):
|
| 109 |
"""Handle chat conversations with formatting options"""
|
|
|
|
|
|
|
|
|
|
|
|
|
| 110 |
try:
|
| 111 |
logger.info(f"Chat request received (format: {request.format})")
|
| 112 |
raw_response = agent.chat(
|
|
@@ -136,32 +146,28 @@ async def chat_endpoint(request: ChatRequest):
|
|
| 136 |
@app.post("/upload")
|
| 137 |
async def upload_file(file: UploadFile = File(...)):
|
| 138 |
"""Handle file uploads and process with TxAgent"""
|
|
|
|
|
|
|
|
|
|
|
|
|
| 139 |
try:
|
| 140 |
logger.info(f"File upload received: {file.filename}")
|
| 141 |
-
|
| 142 |
-
# Read file content
|
| 143 |
content = ""
|
| 144 |
if file.filename.endswith('.pdf'):
|
| 145 |
pdf_reader = PyPDF2.PdfReader(file.file)
|
| 146 |
for page in pdf_reader.pages:
|
| 147 |
content += page.extract_text() or ""
|
| 148 |
else:
|
| 149 |
-
# Assume text-based file
|
| 150 |
content = await file.read()
|
| 151 |
content = content.decode('utf-8', errors='ignore')
|
| 152 |
|
| 153 |
-
|
| 154 |
-
message = f"Analyze the following medical document content:\n\n{content[:10000]}" # Limit to 10k chars for brevity
|
| 155 |
-
|
| 156 |
-
# Process with TxAgent
|
| 157 |
raw_response = agent.chat(
|
| 158 |
message=message,
|
| 159 |
history=[],
|
| 160 |
temperature=0.7,
|
| 161 |
max_new_tokens=512
|
| 162 |
)
|
| 163 |
-
|
| 164 |
-
# Format response (using clean format for consistency)
|
| 165 |
formatted_response = {
|
| 166 |
"raw": raw_response,
|
| 167 |
"clean": clean_text_response(raw_response),
|
|
@@ -169,7 +175,6 @@ async def upload_file(file: UploadFile = File(...)):
|
|
| 169 |
"html": markdown.markdown(raw_response)
|
| 170 |
}
|
| 171 |
response_content = formatted_response["clean"]
|
| 172 |
-
|
| 173 |
return JSONResponse({
|
| 174 |
"status": "success",
|
| 175 |
"format": "clean",
|
|
@@ -187,7 +192,7 @@ async def upload_file(file: UploadFile = File(...)):
|
|
| 187 |
async def service_status():
|
| 188 |
"""Check service status"""
|
| 189 |
return {
|
| 190 |
-
"status": "running",
|
| 191 |
"version": "2.0.0",
|
| 192 |
"model": agent.model_name if agent else "not loaded",
|
| 193 |
"formats_available": ["raw", "clean", "structured", "html"],
|
|
|
|
| 87 |
global agent
|
| 88 |
try:
|
| 89 |
logger.info("Initializing TxAgent...")
|
| 90 |
+
# Get Hugging Face token from environment variable
|
| 91 |
+
hf_token = os.getenv("HUGGINGFACE_TOKEN")
|
| 92 |
+
model_kwargs = {"token": hf_token} if hf_token else {}
|
| 93 |
+
|
| 94 |
agent = TxAgent(
|
| 95 |
+
model_name="mims-harvard/TxAgent-T1-Llama-3.1-8B", # Corrected model name
|
| 96 |
rag_model_name="mims-harvard/ToolRAG-T1-GTE-Qwen2-1.5B",
|
| 97 |
tool_files_dict={},
|
| 98 |
enable_finish=True,
|
|
|
|
| 100 |
force_finish=True,
|
| 101 |
enable_checker=True,
|
| 102 |
step_rag_num=4,
|
| 103 |
+
seed=100,
|
| 104 |
+
**model_kwargs
|
| 105 |
)
|
| 106 |
agent.init_model()
|
| 107 |
logger.info("TxAgent initialized successfully")
|
| 108 |
except Exception as e:
|
| 109 |
logger.error(f"Failed to initialize agent: {str(e)}")
|
| 110 |
+
# Allow app to start, but endpoints will return errors if agent is None
|
| 111 |
+
agent = None
|
| 112 |
|
| 113 |
@app.post("/chat")
|
| 114 |
async def chat_endpoint(request: ChatRequest):
|
| 115 |
"""Handle chat conversations with formatting options"""
|
| 116 |
+
if agent is None:
|
| 117 |
+
logger.error("TxAgent not initialized")
|
| 118 |
+
raise HTTPException(status_code=503, detail="TxAgent service unavailable")
|
| 119 |
+
|
| 120 |
try:
|
| 121 |
logger.info(f"Chat request received (format: {request.format})")
|
| 122 |
raw_response = agent.chat(
|
|
|
|
| 146 |
@app.post("/upload")
|
| 147 |
async def upload_file(file: UploadFile = File(...)):
|
| 148 |
"""Handle file uploads and process with TxAgent"""
|
| 149 |
+
if agent is None:
|
| 150 |
+
logger.error("TxAgent not initialized")
|
| 151 |
+
raise HTTPException(status_code=503, detail="TxAgent service unavailable")
|
| 152 |
+
|
| 153 |
try:
|
| 154 |
logger.info(f"File upload received: {file.filename}")
|
|
|
|
|
|
|
| 155 |
content = ""
|
| 156 |
if file.filename.endswith('.pdf'):
|
| 157 |
pdf_reader = PyPDF2.PdfReader(file.file)
|
| 158 |
for page in pdf_reader.pages:
|
| 159 |
content += page.extract_text() or ""
|
| 160 |
else:
|
|
|
|
| 161 |
content = await file.read()
|
| 162 |
content = content.decode('utf-8', errors='ignore')
|
| 163 |
|
| 164 |
+
message = f"Analyze the following medical document content:\n\n{content[:10000]}"
|
|
|
|
|
|
|
|
|
|
| 165 |
raw_response = agent.chat(
|
| 166 |
message=message,
|
| 167 |
history=[],
|
| 168 |
temperature=0.7,
|
| 169 |
max_new_tokens=512
|
| 170 |
)
|
|
|
|
|
|
|
| 171 |
formatted_response = {
|
| 172 |
"raw": raw_response,
|
| 173 |
"clean": clean_text_response(raw_response),
|
|
|
|
| 175 |
"html": markdown.markdown(raw_response)
|
| 176 |
}
|
| 177 |
response_content = formatted_response["clean"]
|
|
|
|
| 178 |
return JSONResponse({
|
| 179 |
"status": "success",
|
| 180 |
"format": "clean",
|
|
|
|
| 192 |
async def service_status():
|
| 193 |
"""Check service status"""
|
| 194 |
return {
|
| 195 |
+
"status": "running" if agent else "failed",
|
| 196 |
"version": "2.0.0",
|
| 197 |
"model": agent.model_name if agent else "not loaded",
|
| 198 |
"formats_available": ["raw", "clean", "structured", "html"],
|