Update app.py
Browse files
app.py
CHANGED
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@@ -9,16 +9,15 @@ from urllib.parse import quote
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st.set_page_config(page_title="Biodiversity GIS Explorer", layout="wide")
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st.title("🌍 Biodiversity GIS Explorer")
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st.write("Explore biodiversity species using GBIF + AI analysis")
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# =====================================================
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# GEMINI
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# =====================================================
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def call_gemini(prompt, api_key):
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if not api_key:
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return "⚠️
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url = (
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"https://generativelanguage.googleapis.com/v1beta/models/"
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@@ -27,21 +26,25 @@ def call_gemini(prompt, api_key):
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)
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payload = {
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"contents": [
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{"parts": [{"text": prompt}]}
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]
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}
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try:
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r = requests.post(url, json=payload)
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data = r.json()
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return data["candidates"][0]["content"]["parts"][0]["text"]
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except Exception as e:
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return f"Gemini
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# =====================================================
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# COUNTRY
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# =====================================================
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country_codes = {
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@@ -50,22 +53,14 @@ country_codes = {
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"egypt": "EG",
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"مصر": "EG",
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"kenya": "KE",
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"كينيا": "KE",
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"ethiopia": "ET",
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"إثيوبيا": "ET",
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"saudi arabia": "SA",
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"السعودية": "SA",
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"usa": "US",
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"
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"america": "US",
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"امريكا": "US",
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"canada": "CA",
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"كندا": "CA"
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}
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# =====================================================
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# FILTERS (
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# =====================================================
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species_filters = {
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@@ -79,17 +74,16 @@ species_filters = {
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# =====================================================
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#
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# =====================================================
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def get_species(country_code, filter_value):
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url = (
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"https://api.gbif.org/v1/occurrence/search?"
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f"country={country_code}"
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f"&{filter_value}"
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"&limit=200"
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"&has_coordinate=true"
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"&occurrence_status=PRESENT"
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)
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@@ -100,28 +94,35 @@ def get_species(country_code, filter_value):
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species = []
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"unclassified", "sp.", "cf.", "aff.",
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"unknown", "incertae", "cf", "sp"
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]
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for item in results:
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sp = item.get("species")
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if not sp:
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continue
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sp_low = sp.lower()
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-
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if any(w in sp_low for w in bad_words):
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continue
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# must be binomial name
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if len(sp.split()) < 2:
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continue
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if sp not in species:
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species.append(sp)
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@@ -138,13 +139,12 @@ def get_species(country_code, filter_value):
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def get_species_links(species_name, country):
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links = []
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clean = " ".join(species_name.split()[:2])
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q = quote(clean)
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c = quote(country)
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try:
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r = requests.get(
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f"https://api.gbif.org/v1/species/match?name={q}"
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@@ -157,20 +157,9 @@ def get_species_links(species_name, country):
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except:
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pass
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links.append(
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)
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# iNaturalist
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links.append(
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f"- [iNaturalist](https://www.inaturalist.org/search?q={q})"
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)
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# Google Scholar
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links.append(
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f"- [Google Scholar](https://scholar.google.com/scholar?q={q}+{c})"
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)
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return links
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@@ -187,43 +176,34 @@ species_type = st.selectbox(
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)
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# =====================================================
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#
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# =====================================================
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if st.button("Search Biodiversity"):
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# normalize input
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country_clean = country.strip().lower()
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country_code = country_codes.get(country_clean)
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if not country:
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st.warning("Please enter a country")
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st.stop()
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if not country_code:
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st.error(
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st.stop()
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filter_value = species_filters[species_type]
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with st.spinner("Fetching biodiversity data..."):
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species_list = get_species(country_code, filter_value)
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if not species_list:
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st.warning("No species found
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st.stop()
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# =================================================
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# DISPLAY
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# =================================================
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st.subheader("🐾 Species Found")
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for sp in species_list:
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st.write("•", sp)
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# =================================================
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# AI
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# =================================================
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prompt = f"""
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@@ -235,14 +215,12 @@ Group: {species_type}
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Species:
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{chr(10).join(species_list)}
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"""
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st.subheader("🤖 AI Analysis")
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st.write(
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call_gemini(prompt, os.getenv("GEMINI_API_KEY"))
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)
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# =================================================
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# LINKS
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@@ -251,10 +229,7 @@ Give ecological and GIS analysis only for real species.
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st.subheader("🔗 Links")
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for sp in species_list:
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st.markdown(f"### 🔬 {sp}")
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for link in get_species_links(sp, country):
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st.markdown(link)
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st.markdown("---")
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st.set_page_config(page_title="Biodiversity GIS Explorer", layout="wide")
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st.title("🌍 Biodiversity GIS Explorer")
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# =====================================================
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# GEMINI (FIXED SAFE PARSING)
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# =====================================================
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def call_gemini(prompt, api_key):
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if not api_key:
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return "⚠️ Missing API Key"
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url = (
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"https://generativelanguage.googleapis.com/v1beta/models/"
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)
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payload = {
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"contents": [{"parts": [{"text": prompt}]}]
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}
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try:
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r = requests.post(url, json=payload)
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data = r.json()
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# SAFE CHECK
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if "candidates" not in data:
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return f"Gemini Error: {data}"
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return data["candidates"][0]["content"]["parts"][0]["text"]
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except Exception as e:
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return f"Gemini Exception: {e}"
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# =====================================================
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# COUNTRY
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# =====================================================
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country_codes = {
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"egypt": "EG",
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"مصر": "EG",
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"kenya": "KE",
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"ethiopia": "ET",
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"usa": "US",
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"america": "US"
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}
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# =====================================================
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# FIXED FILTERS (IMPORTANT)
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# =====================================================
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species_filters = {
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# =====================================================
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# CLEAN GBIF (STRICT FILTERING)
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# =====================================================
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def get_species(country_code, filter_value, species_type):
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url = (
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"https://api.gbif.org/v1/occurrence/search?"
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f"country={country_code}"
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f"&{filter_value}"
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"&limit=200"
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"&occurrence_status=PRESENT"
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)
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species = []
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bad = ["sp.", "cf.", "aff.", "unclassified", "unknown"]
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for item in results:
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sp = item.get("species")
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kingdom = item.get("kingdom")
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cls = item.get("class")
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if not sp:
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continue
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sp_low = sp.lower()
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if any(b in sp_low for b in bad):
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continue
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if len(sp.split()) < 2:
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continue
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# STRICT FILTER (FIX FOR YOUR PROBLEM)
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if species_type == "Birds" and cls != "Aves":
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continue
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if species_type == "Plants" and kingdom != "Plantae":
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continue
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if species_type != "Plants" and kingdom != "Animalia":
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continue
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if sp not in species:
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species.append(sp)
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def get_species_links(species_name, country):
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clean = " ".join(species_name.split()[:2])
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q = quote(clean)
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c = quote(country)
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links = []
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try:
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r = requests.get(
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f"https://api.gbif.org/v1/species/match?name={q}"
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except:
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pass
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links.append(f"- [Wikipedia](https://en.wikipedia.org/wiki/{clean.replace(' ','_')})")
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links.append(f"- [iNaturalist](https://www.inaturalist.org/search?q={q})")
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links.append(f"- [Google Scholar](https://scholar.google.com/scholar?q={q}+{c})")
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return links
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)
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# =====================================================
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# RUN
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# =====================================================
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if st.button("Search Biodiversity"):
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country_clean = country.strip().lower()
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country_code = country_codes.get(country_clean)
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if not country_code:
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st.error("Country not supported")
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st.stop()
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filter_value = species_filters[species_type]
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with st.spinner("Fetching clean biodiversity data..."):
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species_list = get_species(country_code, filter_value, species_type)
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if not species_list:
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st.warning("No clean species found")
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st.stop()
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st.subheader("🐾 Species Found")
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for sp in species_list:
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st.write("•", sp)
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# =================================================
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# AI FIXED
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# =================================================
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prompt = f"""
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Species:
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{chr(10).join(species_list)}
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Only use real species. No hallucination.
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"""
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st.subheader("🤖 AI Analysis")
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st.write(call_gemini(prompt, os.getenv("GEMINI_API_KEY")))
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# =================================================
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# LINKS
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st.subheader("🔗 Links")
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for sp in species_list:
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st.markdown(f"### 🔬 {sp}")
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for link in get_species_links(sp, country):
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st.markdown(link)
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st.markdown("---")
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