RRTest_Rag / vector_db.py
Rutvij1504's picture
Add vector DB abstraction supporting pgvector and ChromaDB, plus migration testing tool and documentation
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import os
import json
import psycopg2
from psycopg2.pool import ThreadedConnectionPool
from abc import ABC, abstractmethod
class VectorDBInterface(ABC):
@abstractmethod
def add_documents(self, ids, documents, metadatas, embeddings=None):
pass
@abstractmethod
def query(self, query_embedding, n_results=2, where=None):
pass
@abstractmethod
def get(self, ids):
pass
@abstractmethod
def count(self):
pass
class ChromaDBClient(VectorDBInterface):
def __init__(self, path, collection_name, embedding_function):
import chromadb
self.client = chromadb.PersistentClient(path=path)
self.collection = self.client.get_or_create_collection(
name=collection_name,
embedding_function=embedding_function
)
def add_documents(self, ids, documents, metadatas, embeddings=None):
self.collection.add(
ids=ids,
documents=documents,
metadatas=metadatas,
embeddings=embeddings
)
def query(self, query_embedding, n_results=2, where=None):
query_kwargs = {
"query_embeddings": [query_embedding],
"n_results": n_results
}
if where:
query_kwargs["where"] = where
return self.collection.query(**query_kwargs)
def get(self, ids):
return self.collection.get(ids=ids)
def count(self):
return self.collection.count()
class PGVectorClient(VectorDBInterface):
def __init__(self, host, port, dbname, user, password, table_name="mintoak_content"):
self.conn_params = {
"host": host,
"port": port,
"dbname": dbname,
"user": user,
"password": password
}
self.table_name = table_name
# Threaded connection pool: min 2, max 15 connections
self.pool = ThreadedConnectionPool(2, 15, **self.conn_params)
self._init_db()
def _get_connection(self):
return self.pool.getconn()
def _release_connection(self, conn):
self.pool.putconn(conn)
def _init_db(self):
conn = self._get_connection()
try:
with conn.cursor() as cur:
cur.execute("CREATE EXTENSION IF NOT EXISTS vector;")
cur.execute(f"""
CREATE TABLE IF NOT EXISTS {self.table_name} (
id VARCHAR(255) PRIMARY KEY,
document TEXT,
metadata JSONB,
embedding vector(384)
);
""")
# Create HNSW index for cosine distance to dramatically improve retrieval speed
try:
cur.execute(f"""
CREATE INDEX IF NOT EXISTS {self.table_name}_hnsw_idx
ON {self.table_name} USING hnsw (embedding vector_cosine_ops);
""")
except Exception as ie:
print(f"Warning: could not create HNSW index: {ie}")
conn.rollback() # Rollback failed index sub-transaction
conn.commit()
except Exception as e:
print(f"Error initializing PGVector database: {e}")
raise e
finally:
self._release_connection(conn)
def _translate_where(self, where_dict):
if not where_dict:
return "", ()
conditions = []
params = []
for key, value in where_dict.items():
if isinstance(value, dict):
for op, op_val in value.items():
if op == "$in":
placeholders = ", ".join(["%s"] * len(op_val))
conditions.append(f"metadata->>%s IN ({placeholders})")
params.append(key)
params.extend(op_val)
elif op == "$eq":
conditions.append("metadata->>%s = %s")
params.extend([key, op_val])
elif op == "$ne":
conditions.append("metadata->>%s != %s")
params.extend([key, op_val])
else:
conditions.append("metadata->>%s = %s")
params.extend([key, value])
if conditions:
return " AND " + " AND ".join(conditions), tuple(params)
return "", ()
def add_documents(self, ids, documents, metadatas, embeddings=None):
if not embeddings:
raise ValueError("Embeddings must be pre-computed and provided for pgvector insertion.")
conn = self._get_connection()
try:
with conn.cursor() as cur:
for idx, doc_id in enumerate(ids):
doc = documents[idx]
meta = metadatas[idx]
emb = embeddings[idx]
# Convert numpy array / list to string representation for vector type
emb_list = emb.tolist() if hasattr(emb, "tolist") else list(emb)
emb_str = "[" + ",".join(map(str, emb_list)) + "]"
cur.execute(f"""
INSERT INTO {self.table_name} (id, document, metadata, embedding)
VALUES (%s, %s, %s, %s::vector)
ON CONFLICT (id) DO UPDATE
SET document = EXCLUDED.document,
metadata = EXCLUDED.metadata,
embedding = EXCLUDED.embedding;
""", (doc_id, doc, json.dumps(meta), emb_str))
conn.commit()
finally:
self._release_connection(conn)
def query(self, query_embedding, n_results=2, where=None):
conn = self._get_connection()
try:
with conn.cursor() as cur:
emb_str = "[" + ",".join(map(str, query_embedding)) + "]"
where_clause, where_params = self._translate_where(where)
query_str = f"""
SELECT id, document, metadata, (embedding <=> %s::vector) AS distance
FROM {self.table_name}
WHERE 1=1 {where_clause}
ORDER BY distance ASC
LIMIT %s;
"""
params = (emb_str,) + where_params + (n_results,)
cur.execute(query_str, params)
rows = cur.fetchall()
ids = []
documents = []
metadatas = []
distances = []
for row in rows:
ids.append(row[0])
documents.append(row[1])
metadatas.append(row[2])
distances.append(row[3])
return {
"ids": [ids],
"documents": [documents],
"metadatas": [metadatas],
"distances": [distances]
}
finally:
self._release_connection(conn)
def get(self, ids):
conn = self._get_connection()
try:
with conn.cursor() as cur:
cur.execute(f"""
SELECT id, document, metadata
FROM {self.table_name}
WHERE id = ANY(%s);
""", (ids,))
rows = cur.fetchall()
ret_ids = []
documents = []
metadatas = []
for row in rows:
ret_ids.append(row[0])
documents.append(row[1])
metadatas.append(row[2])
return {
"ids": ret_ids,
"documents": documents,
"metadatas": metadatas
}
finally:
self._release_connection(conn)
def count(self):
conn = self._get_connection()
try:
with conn.cursor() as cur:
cur.execute(f"SELECT COUNT(*) FROM {self.table_name};")
return cur.fetchone()[0]
finally:
self._release_connection(conn)
def get_vector_db(embedding_function=None):
db_type = os.getenv("VECTOR_DB_TYPE", "chroma").lower()
if db_type == "pgvector":
host = os.getenv("PG_HOST", "localhost")
port = os.getenv("PG_PORT", "5432")
dbname = os.getenv("PG_NAME", "mintoak_db")
user = os.getenv("PG_USER", "postgres")
password = os.getenv("PG_PASSWORD", "postgres")
return PGVectorClient(host, port, dbname, user, password)
else:
BASE_DIR = os.path.dirname(os.path.abspath(__file__))
CHROMA_DB_PATH = os.path.join(BASE_DIR, "data/mintoak/chroma_db")
COLLECTION_NAME = "mintoak_content"
return ChromaDBClient(CHROMA_DB_PATH, COLLECTION_NAME, embedding_function)