Spaces:
Running
Add live brain prediction mode (webcam, screen capture, video file)
Browse filesNew page: 6_Live_Inference.py
- Real-time brain activation from webcam, screen capture, or uploaded video
- 3D brain visualization updating live with Inferno colormap
- Rolling cognitive load timeline (Visual/Auditory/Language/Executive)
- Glowing metric cards updating every prediction
- Start/Stop controls with FPS and latency indicators
- Status bar showing mode (simulation/cortexlab), FPS, prediction count
- Predictions stored in session state for use in all other analysis pages
- Simulation mode works without CortexLab (predictions from image statistics)
- Real mode uses TRIBE v2 when CortexLab + GPU available
New utilities:
- live_capture.py: WebcamCapture (OpenCV), ScreenCapture (mss), FileStreamer
- All run in background threads, yield MediaFrame objects
- Configurable FPS, thread-safe buffer
- live_engine.py: LiveInferenceEngine
- Background thread consuming frames and producing predictions
- Dual mode: CortexLab real inference or simulation fallback
- Computes cognitive load dimensions from vertex activations
- Tracks metrics (FPS, latency, prediction count)
Updated home page with Live Inference feature card
- Home.py +4 -10
- app.py +4 -10
- live_capture.py +208 -0
- live_engine.py +284 -0
- pages/6_Live_Inference.py +294 -0
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with col6:
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st.markdown(feature_card(
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"Real-time
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"#
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), unsafe_allow_html=True)
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st.
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<a href="https://github.com/siddhant-rajhans/cortexlab" target="_blank" style="
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display: inline-block; padding: 0.4rem 1rem;
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color: #F59E0B; font-size: 0.85rem;
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text-decoration: none;
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">View on GitHub →</a>
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""", unsafe_allow_html=True)
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# --- Data Config (collapsed) ---
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st.markdown("<div style='height: 1rem'></div>", unsafe_allow_html=True)
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with col6:
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st.markdown(feature_card(
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"🔴", "Live Inference",
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"Real-time brain prediction from webcam, screen capture, or video. All metrics update live. Works in simulation mode or with full CortexLab + GPU.",
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"#EF4444"
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), unsafe_allow_html=True)
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st.page_link("pages/6_Live_Inference.py", label="Open Live Inference")
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# --- Data Config (collapsed) ---
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st.markdown("<div style='height: 1rem'></div>", unsafe_allow_html=True)
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with col6:
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st.markdown(feature_card(
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"
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"Real-time
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"#
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), unsafe_allow_html=True)
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st.
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<a href="https://github.com/siddhant-rajhans/cortexlab" target="_blank" style="
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display: inline-block; padding: 0.4rem 1rem;
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color: #F59E0B; font-size: 0.85rem;
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text-decoration: none;
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">View on GitHub →</a>
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""", unsafe_allow_html=True)
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# --- Data Config (collapsed) ---
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st.markdown("<div style='height: 1rem'></div>", unsafe_allow_html=True)
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with col6:
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st.markdown(feature_card(
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"🔴", "Live Inference",
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"Real-time brain prediction from webcam, screen capture, or video. All metrics update live. Works in simulation mode or with full CortexLab + GPU.",
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"#EF4444"
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), unsafe_allow_html=True)
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st.page_link("pages/6_Live_Inference.py", label="Open Live Inference")
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# --- Data Config (collapsed) ---
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st.markdown("<div style='height: 1rem'></div>", unsafe_allow_html=True)
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"""Media capture sources for live brain prediction.
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Provides webcam, screen capture, and file streaming sources that
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yield frames at a controlled rate for real-time inference.
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"""
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from __future__ import annotations
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import time
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import threading
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import logging
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from pathlib import Path
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from collections import deque
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from dataclasses import dataclass
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import numpy as np
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logger = logging.getLogger(__name__)
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@dataclass
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class MediaFrame:
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"""A single frame from any media source."""
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video_frame: np.ndarray | None = None # (H, W, 3) RGB
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audio_chunk: np.ndarray | None = None # (samples,) float32
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timestamp: float = 0.0
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class BaseCapture:
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"""Base class for media capture sources."""
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def __init__(self, fps: float = 1.0):
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self.fps = fps
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self._running = False
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self._buffer: deque[MediaFrame] = deque(maxlen=300)
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self._thread: threading.Thread | None = None
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self._lock = threading.Lock()
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def start(self):
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self._running = True
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self._thread = threading.Thread(target=self._capture_loop, daemon=True)
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self._thread.start()
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def stop(self):
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self._running = False
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if self._thread:
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self._thread.join(timeout=3.0)
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def get_latest_frame(self) -> MediaFrame | None:
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with self._lock:
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return self._buffer[-1] if self._buffer else None
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def get_all_frames(self) -> list[MediaFrame]:
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with self._lock:
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frames = list(self._buffer)
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return frames
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@property
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def is_running(self) -> bool:
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return self._running
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@property
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def frame_count(self) -> int:
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return len(self._buffer)
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def _capture_loop(self):
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raise NotImplementedError
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class WebcamCapture(BaseCapture):
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"""Capture frames from webcam using OpenCV."""
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def __init__(self, camera_index: int = 0, fps: float = 1.0, resolution: tuple = (640, 480)):
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super().__init__(fps)
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self.camera_index = camera_index
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self.resolution = resolution
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def _capture_loop(self):
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try:
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import cv2
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except ImportError:
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logger.error("OpenCV not installed. Run: pip install opencv-python")
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self._running = False
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return
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cap = cv2.VideoCapture(self.camera_index)
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if not cap.isOpened():
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logger.error(f"Cannot open camera {self.camera_index}")
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self._running = False
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return
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cap.set(cv2.CAP_PROP_FRAME_WIDTH, self.resolution[0])
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cap.set(cv2.CAP_PROP_FRAME_HEIGHT, self.resolution[1])
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start_time = time.time()
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interval = 1.0 / self.fps
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try:
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while self._running:
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ret, frame = cap.read()
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if not ret:
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break
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# BGR -> RGB
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frame_rgb = cv2.cvtColor(frame, cv2.COLOR_BGR2RGB)
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media_frame = MediaFrame(
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video_frame=frame_rgb,
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timestamp=time.time() - start_time,
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)
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with self._lock:
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self._buffer.append(media_frame)
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time.sleep(interval)
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finally:
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cap.release()
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class ScreenCapture(BaseCapture):
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"""Capture screen frames using mss."""
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def __init__(self, fps: float = 1.0, region: dict | None = None):
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super().__init__(fps)
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self.region = region # {"left": 0, "top": 0, "width": 1920, "height": 1080}
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def _capture_loop(self):
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try:
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import mss
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from PIL import Image
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except ImportError:
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logger.error("mss/PIL not installed. Run: pip install mss Pillow")
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self._running = False
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return
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start_time = time.time()
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interval = 1.0 / self.fps
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with mss.mss() as sct:
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monitor = self.region or sct.monitors[1] # Primary monitor
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while self._running:
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screenshot = sct.grab(monitor)
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img = Image.frombytes("RGB", screenshot.size, screenshot.bgra, "raw", "BGRX")
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frame = np.array(img)
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media_frame = MediaFrame(
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video_frame=frame,
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timestamp=time.time() - start_time,
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)
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with self._lock:
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self._buffer.append(media_frame)
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time.sleep(interval)
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class FileStreamer(BaseCapture):
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"""Stream a video file frame-by-frame at real-time speed."""
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def __init__(self, file_path: str, fps: float = 1.0):
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super().__init__(fps)
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self.file_path = file_path
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def _capture_loop(self):
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try:
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import cv2
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except ImportError:
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logger.error("OpenCV not installed. Run: pip install opencv-python")
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self._running = False
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return
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cap = cv2.VideoCapture(self.file_path)
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if not cap.isOpened():
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logger.error(f"Cannot open video: {self.file_path}")
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self._running = False
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return
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video_fps = cap.get(cv2.CAP_PROP_FPS) or 30
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# Skip frames to match our target FPS
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frame_skip = max(1, int(video_fps / self.fps))
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frame_idx = 0
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start_time = time.time()
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interval = 1.0 / self.fps
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try:
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while self._running:
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ret, frame = cap.read()
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if not ret:
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self._running = False
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break
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frame_idx += 1
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if frame_idx % frame_skip != 0:
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continue
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frame_rgb = cv2.cvtColor(frame, cv2.COLOR_BGR2RGB)
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media_frame = MediaFrame(
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video_frame=frame_rgb,
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timestamp=time.time() - start_time,
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)
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with self._lock:
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self._buffer.append(media_frame)
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time.sleep(interval)
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finally:
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cap.release()
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def get_capture_source(source_type: str, **kwargs) -> BaseCapture:
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"""Factory function to create a capture source."""
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sources = {
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"webcam": WebcamCapture,
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"screen": ScreenCapture,
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"file": FileStreamer,
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}
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if source_type not in sources:
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raise ValueError(f"Unknown source: {source_type}. Choose from {list(sources)}")
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return sources[source_type](**kwargs)
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|
| 1 |
+
"""Real-time brain prediction engine.
|
| 2 |
+
|
| 3 |
+
Runs in a background thread, consuming frames from a capture source,
|
| 4 |
+
extracting features, and producing brain predictions via TRIBE v2.
|
| 5 |
+
|
| 6 |
+
When CortexLab is not installed, falls back to a simulation mode that
|
| 7 |
+
generates synthetic predictions from frame statistics.
|
| 8 |
+
"""
|
| 9 |
+
|
| 10 |
+
from __future__ import annotations
|
| 11 |
+
|
| 12 |
+
import time
|
| 13 |
+
import threading
|
| 14 |
+
import logging
|
| 15 |
+
from collections import deque
|
| 16 |
+
from dataclasses import dataclass, field
|
| 17 |
+
|
| 18 |
+
import numpy as np
|
| 19 |
+
|
| 20 |
+
from live_capture import BaseCapture, MediaFrame
|
| 21 |
+
|
| 22 |
+
logger = logging.getLogger(__name__)
|
| 23 |
+
|
| 24 |
+
# Check if CortexLab is available
|
| 25 |
+
try:
|
| 26 |
+
from cortexlab.inference.predictor import TribeModel
|
| 27 |
+
CORTEXLAB_AVAILABLE = True
|
| 28 |
+
except ImportError:
|
| 29 |
+
CORTEXLAB_AVAILABLE = False
|
| 30 |
+
|
| 31 |
+
|
| 32 |
+
@dataclass
|
| 33 |
+
class LivePrediction:
|
| 34 |
+
"""A single prediction with metadata."""
|
| 35 |
+
vertex_data: np.ndarray # (n_vertices,)
|
| 36 |
+
timestamp: float
|
| 37 |
+
cognitive_load: dict[str, float] = field(default_factory=dict)
|
| 38 |
+
processing_time_ms: float = 0.0
|
| 39 |
+
|
| 40 |
+
|
| 41 |
+
@dataclass
|
| 42 |
+
class LiveMetrics:
|
| 43 |
+
"""Aggregated metrics from the live engine."""
|
| 44 |
+
fps: float = 0.0
|
| 45 |
+
total_frames: int = 0
|
| 46 |
+
total_predictions: int = 0
|
| 47 |
+
avg_latency_ms: float = 0.0
|
| 48 |
+
is_running: bool = False
|
| 49 |
+
mode: str = "simulation" # "simulation" or "cortexlab"
|
| 50 |
+
|
| 51 |
+
|
| 52 |
+
class LiveInferenceEngine:
|
| 53 |
+
"""Background engine for real-time brain prediction.
|
| 54 |
+
|
| 55 |
+
Consumes frames from a capture source and produces brain predictions.
|
| 56 |
+
If CortexLab is installed and a GPU is available, uses the real TRIBE v2
|
| 57 |
+
model. Otherwise, falls back to simulation mode that generates plausible
|
| 58 |
+
predictions from frame statistics.
|
| 59 |
+
"""
|
| 60 |
+
|
| 61 |
+
def __init__(
|
| 62 |
+
self,
|
| 63 |
+
n_vertices: int = 580,
|
| 64 |
+
roi_indices: dict | None = None,
|
| 65 |
+
buffer_size: int = 120,
|
| 66 |
+
checkpoint: str = "facebook/tribev2",
|
| 67 |
+
device: str = "auto",
|
| 68 |
+
cache_folder: str = "./cache",
|
| 69 |
+
):
|
| 70 |
+
self.n_vertices = n_vertices
|
| 71 |
+
self.roi_indices = roi_indices or {}
|
| 72 |
+
self.buffer_size = buffer_size
|
| 73 |
+
self.checkpoint = checkpoint
|
| 74 |
+
self.device = device
|
| 75 |
+
self.cache_folder = cache_folder
|
| 76 |
+
|
| 77 |
+
self._predictions: deque[LivePrediction] = deque(maxlen=buffer_size)
|
| 78 |
+
self._running = False
|
| 79 |
+
self._thread: threading.Thread | None = None
|
| 80 |
+
self._lock = threading.Lock()
|
| 81 |
+
self._model = None
|
| 82 |
+
self._metrics = LiveMetrics()
|
| 83 |
+
self._capture: BaseCapture | None = None
|
| 84 |
+
|
| 85 |
+
def start(self, capture: BaseCapture):
|
| 86 |
+
"""Start the inference engine with a media capture source."""
|
| 87 |
+
if self._running:
|
| 88 |
+
return
|
| 89 |
+
|
| 90 |
+
self._capture = capture
|
| 91 |
+
self._running = True
|
| 92 |
+
self._metrics = LiveMetrics(is_running=True)
|
| 93 |
+
|
| 94 |
+
# Try to load CortexLab model
|
| 95 |
+
if CORTEXLAB_AVAILABLE:
|
| 96 |
+
try:
|
| 97 |
+
logger.info("Loading TRIBE v2 model...")
|
| 98 |
+
self._model = TribeModel.from_pretrained(
|
| 99 |
+
self.checkpoint, device=self.device, cache_folder=self.cache_folder
|
| 100 |
+
)
|
| 101 |
+
self._metrics.mode = "cortexlab"
|
| 102 |
+
logger.info("Model loaded. Using real inference.")
|
| 103 |
+
except Exception as e:
|
| 104 |
+
logger.warning(f"Failed to load model: {e}. Using simulation mode.")
|
| 105 |
+
self._model = None
|
| 106 |
+
self._metrics.mode = "simulation"
|
| 107 |
+
else:
|
| 108 |
+
self._metrics.mode = "simulation"
|
| 109 |
+
|
| 110 |
+
capture.start()
|
| 111 |
+
self._thread = threading.Thread(target=self._inference_loop, daemon=True)
|
| 112 |
+
self._thread.start()
|
| 113 |
+
|
| 114 |
+
def stop(self):
|
| 115 |
+
"""Stop the engine and capture source."""
|
| 116 |
+
self._running = False
|
| 117 |
+
if self._capture:
|
| 118 |
+
self._capture.stop()
|
| 119 |
+
if self._thread:
|
| 120 |
+
self._thread.join(timeout=5.0)
|
| 121 |
+
self._metrics.is_running = False
|
| 122 |
+
|
| 123 |
+
def get_latest_prediction(self) -> LivePrediction | None:
|
| 124 |
+
with self._lock:
|
| 125 |
+
return self._predictions[-1] if self._predictions else None
|
| 126 |
+
|
| 127 |
+
def get_predictions(self, n: int = 60) -> list[LivePrediction]:
|
| 128 |
+
with self._lock:
|
| 129 |
+
return list(self._predictions)[-n:]
|
| 130 |
+
|
| 131 |
+
def get_metrics(self) -> LiveMetrics:
|
| 132 |
+
return self._metrics
|
| 133 |
+
|
| 134 |
+
def _inference_loop(self):
|
| 135 |
+
"""Main loop: consume frames, produce predictions."""
|
| 136 |
+
frame_times = deque(maxlen=30)
|
| 137 |
+
last_frame_count = 0
|
| 138 |
+
|
| 139 |
+
while self._running:
|
| 140 |
+
frame = self._capture.get_latest_frame()
|
| 141 |
+
if frame is None:
|
| 142 |
+
time.sleep(0.1)
|
| 143 |
+
continue
|
| 144 |
+
|
| 145 |
+
# Skip if we already processed this frame
|
| 146 |
+
current_count = self._capture.frame_count
|
| 147 |
+
if current_count == last_frame_count:
|
| 148 |
+
time.sleep(0.05)
|
| 149 |
+
continue
|
| 150 |
+
last_frame_count = current_count
|
| 151 |
+
|
| 152 |
+
start = time.time()
|
| 153 |
+
|
| 154 |
+
if self._model is not None and self._metrics.mode == "cortexlab":
|
| 155 |
+
prediction = self._run_real_inference(frame)
|
| 156 |
+
else:
|
| 157 |
+
prediction = self._run_simulation(frame)
|
| 158 |
+
|
| 159 |
+
elapsed_ms = (time.time() - start) * 1000
|
| 160 |
+
prediction.processing_time_ms = elapsed_ms
|
| 161 |
+
|
| 162 |
+
with self._lock:
|
| 163 |
+
self._predictions.append(prediction)
|
| 164 |
+
|
| 165 |
+
# Update metrics
|
| 166 |
+
frame_times.append(time.time())
|
| 167 |
+
self._metrics.total_predictions += 1
|
| 168 |
+
self._metrics.total_frames = current_count
|
| 169 |
+
self._metrics.avg_latency_ms = elapsed_ms
|
| 170 |
+
if len(frame_times) >= 2:
|
| 171 |
+
self._metrics.fps = (len(frame_times) - 1) / (frame_times[-1] - frame_times[0])
|
| 172 |
+
|
| 173 |
+
# Check if capture stopped (file ended)
|
| 174 |
+
if not self._capture.is_running:
|
| 175 |
+
self._running = False
|
| 176 |
+
self._metrics.is_running = False
|
| 177 |
+
|
| 178 |
+
def _run_real_inference(self, frame: MediaFrame) -> LivePrediction:
|
| 179 |
+
"""Run actual TRIBE v2 inference on a frame.
|
| 180 |
+
|
| 181 |
+
For real-time, we skip the full pipeline (get_events_dataframe)
|
| 182 |
+
and use a simplified feature extraction path.
|
| 183 |
+
"""
|
| 184 |
+
import tempfile
|
| 185 |
+
import os
|
| 186 |
+
|
| 187 |
+
try:
|
| 188 |
+
# Save frame as temporary video (1 frame)
|
| 189 |
+
import cv2
|
| 190 |
+
tmp_path = os.path.join(tempfile.gettempdir(), "cortexlab_live_frame.mp4")
|
| 191 |
+
h, w = frame.video_frame.shape[:2]
|
| 192 |
+
out = cv2.VideoWriter(tmp_path, cv2.VideoWriter_fourcc(*'mp4v'), 1, (w, h))
|
| 193 |
+
out.write(cv2.cvtColor(frame.video_frame, cv2.COLOR_RGB2BGR))
|
| 194 |
+
out.release()
|
| 195 |
+
|
| 196 |
+
events = self._model.get_events_dataframe(video_path=tmp_path)
|
| 197 |
+
preds, _ = self._model.predict(events, verbose=False)
|
| 198 |
+
vertex_data = preds.mean(axis=0) if preds.ndim == 2 else preds
|
| 199 |
+
|
| 200 |
+
# Normalize to [0, 1]
|
| 201 |
+
vmin, vmax = vertex_data.min(), vertex_data.max()
|
| 202 |
+
if vmax > vmin:
|
| 203 |
+
vertex_data = (vertex_data - vmin) / (vmax - vmin)
|
| 204 |
+
|
| 205 |
+
os.unlink(tmp_path)
|
| 206 |
+
except Exception as e:
|
| 207 |
+
logger.warning(f"Inference failed: {e}. Falling back to simulation.")
|
| 208 |
+
return self._run_simulation(frame)
|
| 209 |
+
|
| 210 |
+
cog_load = self._compute_cognitive_load(vertex_data)
|
| 211 |
+
return LivePrediction(
|
| 212 |
+
vertex_data=vertex_data,
|
| 213 |
+
timestamp=frame.timestamp,
|
| 214 |
+
cognitive_load=cog_load,
|
| 215 |
+
)
|
| 216 |
+
|
| 217 |
+
def _run_simulation(self, frame: MediaFrame) -> LivePrediction:
|
| 218 |
+
"""Generate plausible predictions from frame statistics.
|
| 219 |
+
|
| 220 |
+
Uses frame brightness/color as proxy for visual complexity,
|
| 221 |
+
creating biologically-inspired activation patterns.
|
| 222 |
+
"""
|
| 223 |
+
rng = np.random.default_rng(int(frame.timestamp * 1000) % (2**31))
|
| 224 |
+
|
| 225 |
+
# Base noise
|
| 226 |
+
vertex_data = rng.standard_normal(self.n_vertices) * 0.03
|
| 227 |
+
|
| 228 |
+
if frame.video_frame is not None:
|
| 229 |
+
img = frame.video_frame.astype(np.float32) / 255.0
|
| 230 |
+
|
| 231 |
+
# Visual complexity from image statistics
|
| 232 |
+
brightness = img.mean()
|
| 233 |
+
contrast = img.std()
|
| 234 |
+
color_variance = img.var(axis=(0, 1)).mean()
|
| 235 |
+
|
| 236 |
+
# Map to ROI activations
|
| 237 |
+
for roi_name, vertices in self.roi_indices.items():
|
| 238 |
+
valid = vertices[vertices < self.n_vertices]
|
| 239 |
+
if len(valid) == 0:
|
| 240 |
+
continue
|
| 241 |
+
|
| 242 |
+
# Visual ROIs respond to brightness/contrast
|
| 243 |
+
if roi_name in ["V1", "V2", "V3", "V4", "MT", "MST", "FFC", "VVC"]:
|
| 244 |
+
activation = contrast * 0.8 + color_variance * 0.5
|
| 245 |
+
# Auditory ROIs get low baseline
|
| 246 |
+
elif roi_name in ["A1", "LBelt", "MBelt", "PBelt", "A4", "A5"]:
|
| 247 |
+
activation = 0.05 + rng.random() * 0.1
|
| 248 |
+
# Language ROIs moderate
|
| 249 |
+
elif roi_name in ["44", "45", "IFJa", "IFJp", "TPOJ1", "TPOJ2"]:
|
| 250 |
+
activation = brightness * 0.3
|
| 251 |
+
# Executive ROIs track change
|
| 252 |
+
elif roi_name in ["46", "9-46d", "8Av", "8Ad", "FEF"]:
|
| 253 |
+
activation = contrast * 0.5
|
| 254 |
+
else:
|
| 255 |
+
activation = 0.1
|
| 256 |
+
|
| 257 |
+
vertex_data[valid] = activation + rng.standard_normal(len(valid)) * 0.05
|
| 258 |
+
|
| 259 |
+
vertex_data = np.clip(vertex_data, 0, 1)
|
| 260 |
+
cog_load = self._compute_cognitive_load(vertex_data)
|
| 261 |
+
|
| 262 |
+
return LivePrediction(
|
| 263 |
+
vertex_data=vertex_data,
|
| 264 |
+
timestamp=frame.timestamp,
|
| 265 |
+
cognitive_load=cog_load,
|
| 266 |
+
)
|
| 267 |
+
|
| 268 |
+
def _compute_cognitive_load(self, vertex_data: np.ndarray) -> dict[str, float]:
|
| 269 |
+
"""Compute cognitive load dimensions from vertex data."""
|
| 270 |
+
from utils import COGNITIVE_DIMENSIONS
|
| 271 |
+
|
| 272 |
+
baseline = max(float(np.median(np.abs(vertex_data))), 1e-8)
|
| 273 |
+
scores = {}
|
| 274 |
+
for dim, rois in COGNITIVE_DIMENSIONS.items():
|
| 275 |
+
vals = []
|
| 276 |
+
for roi in rois:
|
| 277 |
+
if roi in self.roi_indices:
|
| 278 |
+
verts = self.roi_indices[roi]
|
| 279 |
+
valid = verts[verts < len(vertex_data)]
|
| 280 |
+
if len(valid) > 0:
|
| 281 |
+
vals.append(np.abs(vertex_data[valid]).mean())
|
| 282 |
+
scores[dim] = min(float(np.mean(vals)) / baseline, 1.0) if vals else 0.0
|
| 283 |
+
scores["Overall"] = float(np.mean(list(scores.values()))) if scores else 0.0
|
| 284 |
+
return scores
|
|
@@ -0,0 +1,294 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
"""Live Brain Prediction - Real-Time Inference from Webcam, Screen, or Video."""
|
| 2 |
+
|
| 3 |
+
import time
|
| 4 |
+
|
| 5 |
+
import numpy as np
|
| 6 |
+
import plotly.graph_objects as go
|
| 7 |
+
import streamlit as st
|
| 8 |
+
from plotly.subplots import make_subplots
|
| 9 |
+
|
| 10 |
+
from session import init_session, show_analysis_log
|
| 11 |
+
from theme import inject_theme, glow_card, section_header
|
| 12 |
+
from utils import make_roi_indices, COGNITIVE_DIMENSIONS
|
| 13 |
+
|
| 14 |
+
st.set_page_config(page_title="Live Inference", page_icon="🔴", layout="wide")
|
| 15 |
+
init_session()
|
| 16 |
+
inject_theme()
|
| 17 |
+
show_analysis_log()
|
| 18 |
+
|
| 19 |
+
st.title("🔴 Live Brain Prediction")
|
| 20 |
+
st.markdown("Real-time brain activation prediction from webcam, screen capture, or video file.")
|
| 21 |
+
|
| 22 |
+
# --- Check Dependencies ---
|
| 23 |
+
deps_ok = True
|
| 24 |
+
missing = []
|
| 25 |
+
|
| 26 |
+
try:
|
| 27 |
+
from live_capture import WebcamCapture, ScreenCapture, FileStreamer, get_capture_source
|
| 28 |
+
from live_engine import LiveInferenceEngine, CORTEXLAB_AVAILABLE
|
| 29 |
+
except ImportError as e:
|
| 30 |
+
deps_ok = False
|
| 31 |
+
missing.append(str(e))
|
| 32 |
+
|
| 33 |
+
# --- Sidebar ---
|
| 34 |
+
with st.sidebar:
|
| 35 |
+
st.header("Live Inference")
|
| 36 |
+
|
| 37 |
+
source_type = st.selectbox("Source", ["webcam", "screen", "file"],
|
| 38 |
+
format_func={"webcam": "Webcam + Mic", "screen": "Screen Capture", "file": "Video File"}.get)
|
| 39 |
+
|
| 40 |
+
if source_type == "file":
|
| 41 |
+
uploaded_file = st.file_uploader("Upload video", type=["mp4", "avi", "mkv", "mov", "webm"])
|
| 42 |
+
|
| 43 |
+
st.subheader("Settings")
|
| 44 |
+
capture_fps = st.slider("Capture FPS", 0.5, 5.0, 1.0, 0.5,
|
| 45 |
+
help="Frames per second. Higher = more responsive but more CPU/GPU load.")
|
| 46 |
+
|
| 47 |
+
if CORTEXLAB_AVAILABLE:
|
| 48 |
+
device = st.selectbox("Device", ["auto", "cuda", "cpu"])
|
| 49 |
+
st.success("CortexLab detected. Real inference available.")
|
| 50 |
+
else:
|
| 51 |
+
device = "cpu"
|
| 52 |
+
st.warning("CortexLab not installed. Running in **simulation mode** (predictions from image statistics).")
|
| 53 |
+
with st.expander("Install CortexLab"):
|
| 54 |
+
st.code("pip install -e ../cortexlab[analysis]", language="bash")
|
| 55 |
+
|
| 56 |
+
st.subheader("Display")
|
| 57 |
+
show_brain_3d = st.checkbox("Show 3D brain", value=True)
|
| 58 |
+
show_timeline = st.checkbox("Show cognitive load timeline", value=True)
|
| 59 |
+
timeline_window = st.slider("Timeline window (seconds)", 10, 120, 60)
|
| 60 |
+
|
| 61 |
+
# --- Initialize Engine ---
|
| 62 |
+
roi_indices, n_vertices = make_roi_indices()
|
| 63 |
+
|
| 64 |
+
if "live_engine" not in st.session_state:
|
| 65 |
+
st.session_state["live_engine"] = None
|
| 66 |
+
if "live_running" not in st.session_state:
|
| 67 |
+
st.session_state["live_running"] = False
|
| 68 |
+
|
| 69 |
+
# --- Controls ---
|
| 70 |
+
col_start, col_stop, col_status = st.columns([1, 1, 2])
|
| 71 |
+
|
| 72 |
+
with col_start:
|
| 73 |
+
start_clicked = st.button("▶ Start", type="primary", use_container_width=True,
|
| 74 |
+
disabled=st.session_state.get("live_running", False))
|
| 75 |
+
|
| 76 |
+
with col_stop:
|
| 77 |
+
stop_clicked = st.button("⬛ Stop", use_container_width=True,
|
| 78 |
+
disabled=not st.session_state.get("live_running", False))
|
| 79 |
+
|
| 80 |
+
# Handle Start
|
| 81 |
+
if start_clicked and deps_ok:
|
| 82 |
+
# Create capture source
|
| 83 |
+
if source_type == "webcam":
|
| 84 |
+
capture = WebcamCapture(fps=capture_fps)
|
| 85 |
+
elif source_type == "screen":
|
| 86 |
+
capture = ScreenCapture(fps=capture_fps)
|
| 87 |
+
elif source_type == "file":
|
| 88 |
+
if uploaded_file is not None:
|
| 89 |
+
import tempfile, os
|
| 90 |
+
tmp_path = os.path.join(tempfile.gettempdir(), uploaded_file.name)
|
| 91 |
+
with open(tmp_path, "wb") as f:
|
| 92 |
+
f.write(uploaded_file.read())
|
| 93 |
+
capture = FileStreamer(file_path=tmp_path, fps=capture_fps)
|
| 94 |
+
else:
|
| 95 |
+
st.error("Upload a video file first.")
|
| 96 |
+
st.stop()
|
| 97 |
+
|
| 98 |
+
# Create and start engine
|
| 99 |
+
engine = LiveInferenceEngine(
|
| 100 |
+
n_vertices=n_vertices,
|
| 101 |
+
roi_indices=roi_indices,
|
| 102 |
+
device=device,
|
| 103 |
+
)
|
| 104 |
+
engine.start(capture)
|
| 105 |
+
st.session_state["live_engine"] = engine
|
| 106 |
+
st.session_state["live_running"] = True
|
| 107 |
+
st.rerun()
|
| 108 |
+
|
| 109 |
+
# Handle Stop
|
| 110 |
+
if stop_clicked:
|
| 111 |
+
engine = st.session_state.get("live_engine")
|
| 112 |
+
if engine:
|
| 113 |
+
engine.stop()
|
| 114 |
+
st.session_state["live_running"] = False
|
| 115 |
+
st.rerun()
|
| 116 |
+
|
| 117 |
+
# --- Status Bar ---
|
| 118 |
+
with col_status:
|
| 119 |
+
engine = st.session_state.get("live_engine")
|
| 120 |
+
if engine and st.session_state.get("live_running"):
|
| 121 |
+
metrics = engine.get_metrics()
|
| 122 |
+
st.markdown(f"""
|
| 123 |
+
<div style="display: flex; gap: 1.5rem; align-items: center; padding: 0.5rem;">
|
| 124 |
+
<span style="color: #EF4444; font-size: 1.2rem;">● LIVE</span>
|
| 125 |
+
<span style="color: #94A3B8;">Mode: <b style="color: #06B6D4;">{metrics.mode}</b></span>
|
| 126 |
+
<span style="color: #94A3B8;">FPS: <b style="color: #10B981;">{metrics.fps:.1f}</b></span>
|
| 127 |
+
<span style="color: #94A3B8;">Predictions: <b style="color: #A29BFE;">{metrics.total_predictions}</b></span>
|
| 128 |
+
<span style="color: #94A3B8;">Latency: <b style="color: #FFEAA7;">{metrics.avg_latency_ms:.0f}ms</b></span>
|
| 129 |
+
</div>
|
| 130 |
+
""", unsafe_allow_html=True)
|
| 131 |
+
elif not st.session_state.get("live_running"):
|
| 132 |
+
st.markdown('<span style="color: #64748B;">Ready. Select a source and click Start.</span>', unsafe_allow_html=True)
|
| 133 |
+
|
| 134 |
+
st.divider()
|
| 135 |
+
|
| 136 |
+
# --- Live Display ---
|
| 137 |
+
if st.session_state.get("live_running") and engine:
|
| 138 |
+
predictions = engine.get_predictions(timeline_window)
|
| 139 |
+
|
| 140 |
+
if predictions:
|
| 141 |
+
latest = predictions[-1]
|
| 142 |
+
|
| 143 |
+
# --- Cognitive Load Metrics ---
|
| 144 |
+
cog = latest.cognitive_load
|
| 145 |
+
c1, c2, c3, c4, c5 = st.columns(5)
|
| 146 |
+
with c1: glow_card("Overall", f"{cog.get('Overall', 0):.2f}", "", "#7C3AED")
|
| 147 |
+
with c2: glow_card("Visual", f"{cog.get('Visual Complexity', 0):.2f}", "", "#00D2FF")
|
| 148 |
+
with c3: glow_card("Auditory", f"{cog.get('Auditory Demand', 0):.2f}", "", "#FF6B6B")
|
| 149 |
+
with c4: glow_card("Language", f"{cog.get('Language Processing', 0):.2f}", "", "#A29BFE")
|
| 150 |
+
with c5: glow_card("Executive", f"{cog.get('Executive Load', 0):.2f}", "", "#FFEAA7")
|
| 151 |
+
|
| 152 |
+
col_brain, col_timeline = st.columns([1, 1])
|
| 153 |
+
|
| 154 |
+
# --- 3D Brain ---
|
| 155 |
+
if show_brain_3d:
|
| 156 |
+
with col_brain:
|
| 157 |
+
section_header("Brain Activation", f"t = {latest.timestamp:.1f}s")
|
| 158 |
+
try:
|
| 159 |
+
from brain_mesh import (
|
| 160 |
+
load_fsaverage_mesh, render_interactive_3d,
|
| 161 |
+
)
|
| 162 |
+
coords, faces = load_fsaverage_mesh("left", "fsaverage4") # Fast mesh for live
|
| 163 |
+
n_mesh = coords.shape[0]
|
| 164 |
+
|
| 165 |
+
# Map vertex data to mesh size
|
| 166 |
+
vd = latest.vertex_data
|
| 167 |
+
if len(vd) < n_mesh:
|
| 168 |
+
vd = np.interp(np.linspace(0, len(vd) - 1, n_mesh), np.arange(len(vd)), vd)
|
| 169 |
+
elif len(vd) > n_mesh:
|
| 170 |
+
vd = vd[:n_mesh]
|
| 171 |
+
|
| 172 |
+
fig_brain = render_interactive_3d(
|
| 173 |
+
coords, faces, vd, cmap="Inferno", vmin=0, vmax=0.8,
|
| 174 |
+
bg_color="#050510", initial_view="Lateral Left",
|
| 175 |
+
)
|
| 176 |
+
if fig_brain:
|
| 177 |
+
fig_brain.update_layout(height=400, margin=dict(l=0, r=0, t=0, b=0))
|
| 178 |
+
st.plotly_chart(fig_brain, use_container_width=True)
|
| 179 |
+
except Exception as e:
|
| 180 |
+
st.warning(f"Brain render error: {e}")
|
| 181 |
+
|
| 182 |
+
# --- Cognitive Load Timeline ---
|
| 183 |
+
if show_timeline:
|
| 184 |
+
with col_timeline:
|
| 185 |
+
section_header("Cognitive Load Timeline", f"{len(predictions)} data points")
|
| 186 |
+
|
| 187 |
+
fig_tl = go.Figure()
|
| 188 |
+
timestamps = [p.timestamp for p in predictions]
|
| 189 |
+
dim_colors = {
|
| 190 |
+
"Visual Complexity": "#00D2FF",
|
| 191 |
+
"Auditory Demand": "#FF6B6B",
|
| 192 |
+
"Language Processing": "#A29BFE",
|
| 193 |
+
"Executive Load": "#FFEAA7",
|
| 194 |
+
}
|
| 195 |
+
|
| 196 |
+
for dim, color in dim_colors.items():
|
| 197 |
+
values = [p.cognitive_load.get(dim, 0) for p in predictions]
|
| 198 |
+
fig_tl.add_trace(go.Scatter(
|
| 199 |
+
x=timestamps, y=values, name=dim.split()[0],
|
| 200 |
+
line=dict(color=color, width=2), mode="lines",
|
| 201 |
+
))
|
| 202 |
+
|
| 203 |
+
fig_tl.update_layout(
|
| 204 |
+
xaxis_title="Time (seconds)", yaxis_title="Load",
|
| 205 |
+
yaxis_range=[0, 1.05], height=400,
|
| 206 |
+
template="plotly_dark",
|
| 207 |
+
legend=dict(orientation="h", yanchor="bottom", y=1.02),
|
| 208 |
+
margin=dict(l=40, r=10, t=10, b=40),
|
| 209 |
+
)
|
| 210 |
+
st.plotly_chart(fig_tl, use_container_width=True)
|
| 211 |
+
|
| 212 |
+
# --- Store latest predictions for other pages ---
|
| 213 |
+
all_vertex_data = np.array([p.vertex_data for p in predictions])
|
| 214 |
+
st.session_state["brain_predictions"] = all_vertex_data
|
| 215 |
+
st.session_state["roi_indices"] = roi_indices
|
| 216 |
+
st.session_state["data_source"] = "live_inference"
|
| 217 |
+
|
| 218 |
+
# --- Navigation ---
|
| 219 |
+
st.divider()
|
| 220 |
+
st.markdown("**Explore live predictions in other tools:**")
|
| 221 |
+
c1, c2, c3, c4 = st.columns(4)
|
| 222 |
+
with c1: st.page_link("pages/5_Brain_Viewer.py", label="Brain Viewer", icon="🧠")
|
| 223 |
+
with c2: st.page_link("pages/2_Cognitive_Load.py", label="Cognitive Load", icon="📊")
|
| 224 |
+
with c3: st.page_link("pages/3_Temporal_Dynamics.py", label="Temporal Dynamics", icon="⏱️")
|
| 225 |
+
with c4: st.page_link("pages/4_Connectivity.py", label="Connectivity", icon="🔗")
|
| 226 |
+
|
| 227 |
+
# --- Auto-refresh ---
|
| 228 |
+
time.sleep(1.0)
|
| 229 |
+
st.rerun()
|
| 230 |
+
|
| 231 |
+
else:
|
| 232 |
+
# --- Not running: show instructions ---
|
| 233 |
+
st.markdown("""
|
| 234 |
+
<div style="
|
| 235 |
+
text-align: center; padding: 3rem 2rem;
|
| 236 |
+
background: rgba(15, 15, 40, 0.4);
|
| 237 |
+
border: 1px solid rgba(100, 100, 255, 0.15);
|
| 238 |
+
border-radius: 16px; margin: 1rem 0;
|
| 239 |
+
">
|
| 240 |
+
<div style="font-size: 3rem; margin-bottom: 1rem;">🧠</div>
|
| 241 |
+
<h3 style="color: #F1F5F9; margin-bottom: 0.5rem;">Ready for Live Brain Prediction</h3>
|
| 242 |
+
<p style="color: #94A3B8; max-width: 600px; margin: 0 auto;">
|
| 243 |
+
Select a source (webcam, screen capture, or video file) from the sidebar,
|
| 244 |
+
then click <b>Start</b> to begin real-time brain activation prediction.
|
| 245 |
+
</p>
|
| 246 |
+
<div style="margin-top: 1.5rem; display: flex; justify-content: center; gap: 2rem;">
|
| 247 |
+
<div style="text-align: center;">
|
| 248 |
+
<div style="font-size: 1.5rem;">📹</div>
|
| 249 |
+
<div style="color: #06B6D4; font-size: 0.85rem; font-weight: 600;">Webcam</div>
|
| 250 |
+
<div style="color: #64748B; font-size: 0.75rem;">Live camera feed</div>
|
| 251 |
+
</div>
|
| 252 |
+
<div style="text-align: center;">
|
| 253 |
+
<div style="font-size: 1.5rem;">🖥️</div>
|
| 254 |
+
<div style="color: #7C3AED; font-size: 0.85rem; font-weight: 600;">Screen</div>
|
| 255 |
+
<div style="color: #64748B; font-size: 0.75rem;">Capture display</div>
|
| 256 |
+
</div>
|
| 257 |
+
<div style="text-align: center;">
|
| 258 |
+
<div style="font-size: 1.5rem;">🎬</div>
|
| 259 |
+
<div style="color: #EC4899; font-size: 0.85rem; font-weight: 600;">Video File</div>
|
| 260 |
+
<div style="color: #64748B; font-size: 0.75rem;">Frame-by-frame</div>
|
| 261 |
+
</div>
|
| 262 |
+
</div>
|
| 263 |
+
</div>
|
| 264 |
+
""", unsafe_allow_html=True)
|
| 265 |
+
|
| 266 |
+
# Show last predictions if available
|
| 267 |
+
if st.session_state.get("brain_predictions") is not None and st.session_state.get("data_source") == "live_inference":
|
| 268 |
+
st.info(f"Previous session predictions available ({st.session_state['brain_predictions'].shape[0]} timepoints). Navigate to analysis pages to explore them.")
|
| 269 |
+
|
| 270 |
+
# --- Methodology ---
|
| 271 |
+
with st.expander("About Live Inference", expanded=False):
|
| 272 |
+
st.markdown(f"""
|
| 273 |
+
**Mode: {'Real (CortexLab)' if CORTEXLAB_AVAILABLE else 'Simulation'}**
|
| 274 |
+
|
| 275 |
+
{'**Real Inference**: Uses TRIBE v2 to extract features (V-JEPA2, Wav2Vec-BERT, LLaMA 3.2) and predict fMRI brain activation at each captured frame. Requires GPU for interactive speed.' if CORTEXLAB_AVAILABLE else '**Simulation Mode**: CortexLab is not installed. Predictions are generated from image statistics (brightness, contrast, color variance) mapped to brain ROIs. This demonstrates the pipeline without requiring GPU or model weights.'}
|
| 276 |
+
|
| 277 |
+
**Sources:**
|
| 278 |
+
- **Webcam**: Captures frames via OpenCV. Requires `pip install opencv-python`.
|
| 279 |
+
- **Screen Capture**: Captures display via mss. Requires `pip install mss Pillow`.
|
| 280 |
+
- **Video File**: Reads uploaded video frame-by-frame at the specified FPS.
|
| 281 |
+
|
| 282 |
+
**Cognitive Load Dimensions** are computed from predicted vertex activations
|
| 283 |
+
grouped by HCP MMP1.0 ROIs (same method as the Cognitive Load Scorer page).
|
| 284 |
+
|
| 285 |
+
**Performance:**
|
| 286 |
+
- Simulation mode: ~1-5ms per frame (CPU)
|
| 287 |
+
- Real inference with GPU: ~50-200ms per frame
|
| 288 |
+
- Real inference with CPU: ~5-30s per frame (not recommended)
|
| 289 |
+
|
| 290 |
+
**To enable real inference:**
|
| 291 |
+
```bash
|
| 292 |
+
pip install -e path/to/cortexlab[analysis]
|
| 293 |
+
```
|
| 294 |
+
""")
|