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Update app.py
Browse files
app.py
CHANGED
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@@ -255,21 +255,76 @@ def my_custom_tool(arg1: str, arg2: int) -> str:
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arg2: The maximum number of datasets to retrieve.
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Returns:
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A list of dataset names matching the search query
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"""
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try:
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keyword = arg1.strip().lower()
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limit = int(arg2)
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medical_terms = [
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]
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if not any(term in keyword for term in medical_terms):
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return f"No medical datasets found for '{arg1}'. Please try another medical term."
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try:
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response = requests.get(
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f"https://huggingface.co/api/datasets?search={keyword}&limit={limit}",
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@@ -278,13 +333,17 @@ def my_custom_tool(arg1: str, arg2: int) -> str:
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response.raise_for_status()
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datasets = response.json()
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except Exception:
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datasets = [{"id": f"example/{keyword}-dataset-{i+1}"} for i in range(limit)]
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if not datasets:
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return f"No datasets found for '{arg1}'."
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except Exception as e:
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return f"Error searching medical datasets for '{arg1}': {str(e)}"
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arg2: The maximum number of datasets to retrieve.
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Returns:
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A numbered list (top N) of dataset names matching the search query.
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"""
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try:
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keyword = arg1.strip().lower()
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limit = int(arg2)
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# Define a comprehensive list of medically relevant terms
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medical_terms = [
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# Anatomy / Body Parts
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"skin", "brain", "lung", "chest", "abdomen", "spine", "bone", "heart", "liver", "kidney",
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"bladder", "stomach", "colon", "rectum", "esophagus", "pancreas", "breast", "ear", "eye",
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"retina", "tooth", "teeth", "tongue", "jaw", "neck", "wrist", "hand", "leg", "arm",
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"shoulder", "pelvis",
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# Diseases / Conditions
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"cancer", "tumor", "stroke", "diabetes", "pneumonia", "covid", "asthma", "eczema",
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"melanoma", "hypertension", "alzheimer", "parkinson", "arthritis", "scoliosis",
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"epilepsy", "glaucoma", "ulcer", "hepatitis", "leukemia", "lymphoma", "tuberculosis",
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"anemia", "obesity", "depression", "anxiety", "bipolar", "autism", "adhd", "ptsd",
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"psychosis", "schizophrenia",
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# Imaging Modalities
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"mri", "ct", "xray", "x-ray", "ultrasound", "pet", "fmri", "mammo", "angiography",
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"radiography", "echocardiogram", "spect", "dermoscopy", "colonoscopy", "endoscopy",
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"biopsy", "histopathology",
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# Medical Specialties
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"radiology", "pathology", "oncology", "cardiology", "neurology", "dermatology",
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"dentistry", "ophthalmology", "urology", "orthopedics", "gastroenterology",
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"pulmonology", "nephrology", "psychiatry", "pediatrics", "geriatrics",
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"infectious disease",
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# Symptoms / Signs
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"lesion", "infection", "fever", "pain", "inflammation", "rash", "headache", "swelling",
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"cough", "seizure", "dizziness", "vomiting", "diarrhea", "nausea", "fatigue", "itching",
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# Common Specific Diseases
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"breast cancer", "prostate cancer", "lung cancer", "skin cancer", "colon cancer",
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"brain tumor", "liver cancer", "cervical cancer", "bladder cancer", "thyroid cancer",
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# Procedures / Interventions
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"surgery", "chemotherapy", "radiation", "transplant", "dialysis", "intubation",
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"stenting", "ventilation", "vaccination", "anesthesia", "rehabilitation", "prosthetics",
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"orthotics",
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# Lab Tests / Biomarkers
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"blood test", "cbc", "glucose", "hemoglobin", "cholesterol", "biomarker", "urinalysis",
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"pcr", "serology", "antibody", "antigen",
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# Clinical Settings / Roles
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"icu", "hospital", "emergency", "clinical notes", "nursing", "physician", "patient",
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"medical record", "electronic health record", "ehr", "vitals",
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# Age-based Terms
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"pediatric", "neonatal", "infant", "child", "adolescent", "geriatrics", "elderly",
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# Epidemiology / Public Health
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"epidemiology", "prevalence", "incidence", "mortality", "public health", "health disparity",
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"risk factor", "social determinant",
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# Pharmacology / Medications
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"drug", "medication", "pharmacology", "side effect", "adverse event", "dose", "tablet",
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"vaccine", "clinical trial", "placebo"
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]
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if not any(term in keyword for term in medical_terms):
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return f"No medical datasets found for '{arg1}'. Please try another medical term."
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# Query Hugging Face API
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try:
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response = requests.get(
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f"https://huggingface.co/api/datasets?search={keyword}&limit={limit}",
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response.raise_for_status()
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datasets = response.json()
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except Exception:
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# Offline fallback
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datasets = [{"id": f"example/{keyword}-dataset-{i+1}"} for i in range(limit)]
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if not datasets:
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return f"No datasets found for '{arg1}'."
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# Format results neatly with numbered bullets
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formatted = "\n".join(
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[f"- Dataset {i+1}: {ds.get('id', 'Unknown')}" for i, ds in enumerate(datasets[:limit])]
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)
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return f"Medical datasets related to '{arg1}':\n{formatted}"
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except Exception as e:
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return f"Error searching medical datasets for '{arg1}': {str(e)}"
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