Spaces:
Sleeping
Sleeping
Upload app.py with huggingface_hub
Browse files
app.py
CHANGED
|
@@ -9,7 +9,6 @@ from groq import Groq
|
|
| 9 |
from PIL import Image
|
| 10 |
from datetime import datetime
|
| 11 |
from huggingface_hub import HfApi, hf_hub_download
|
| 12 |
-
from huggingface_hub.utils import EntryNotFoundError
|
| 13 |
|
| 14 |
GROQ_KEY = os.environ.get("GROQ_API_KEY", "")
|
| 15 |
HF_TOKEN = os.environ.get("HF_TOKEN", "")
|
|
@@ -22,100 +21,260 @@ KNOWHOW = ("MCL: Sylgard 184 PDMS 10:1 ratio 48hr cure green laser PIV 70bpm 5L/
|
|
| 22 |
"Equipment: Heska HT5 hematology analyzer time-resolved PIV Tygon tubing Arduino Uno.")
|
| 23 |
|
| 24 |
CSS = """
|
| 25 |
-
|
| 26 |
-
.
|
| 27 |
-
|
| 28 |
-
|
| 29 |
-
|
| 30 |
-
|
| 31 |
-
|
| 32 |
-
|
| 33 |
-
|
| 34 |
-
.
|
| 35 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 36 |
"""
|
| 37 |
|
| 38 |
-
# ββ PERSISTENT HISTORY FUNCTIONS ββββββββββββββββββββββββββββββββββ
|
| 39 |
-
def get_history_api():
|
| 40 |
-
if not HF_TOKEN: return None
|
| 41 |
-
return HfApi(token=HF_TOKEN)
|
| 42 |
-
|
| 43 |
def load_all_sessions():
|
| 44 |
if not HF_TOKEN: return {}
|
| 45 |
try:
|
| 46 |
-
|
| 47 |
-
path
|
| 48 |
-
|
| 49 |
-
filename="chat_history.json",
|
| 50 |
-
repo_type="dataset",
|
| 51 |
-
token=HF_TOKEN
|
| 52 |
-
)
|
| 53 |
-
with open(path, "r") as f:
|
| 54 |
-
return json.load(f)
|
| 55 |
-
except Exception:
|
| 56 |
-
return {}
|
| 57 |
|
| 58 |
def save_all_sessions(sessions):
|
| 59 |
if not HF_TOKEN: return False
|
| 60 |
try:
|
| 61 |
-
api =
|
| 62 |
-
|
| 63 |
-
|
| 64 |
-
path_or_fileobj=content.encode(),
|
| 65 |
-
path_in_repo="chat_history.json",
|
| 66 |
-
repo_id=HISTORY_REPO,
|
| 67 |
-
repo_type="dataset",
|
| 68 |
-
token=HF_TOKEN,
|
| 69 |
-
commit_message="Update chat history"
|
| 70 |
-
)
|
| 71 |
return True
|
| 72 |
-
except
|
| 73 |
-
print("Save error:", e)
|
| 74 |
-
return False
|
| 75 |
|
| 76 |
def get_session_list():
|
| 77 |
sessions = load_all_sessions()
|
| 78 |
-
if not sessions:
|
| 79 |
-
|
| 80 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 81 |
|
| 82 |
def load_session(session_name):
|
| 83 |
-
if not session_name or session_name
|
| 84 |
-
return [], "No session loaded"
|
| 85 |
sessions = load_all_sessions()
|
| 86 |
if session_name in sessions:
|
| 87 |
-
|
| 88 |
-
return
|
| 89 |
return [], "Session not found"
|
| 90 |
|
| 91 |
-
def save_session(history, session_name):
|
| 92 |
-
if not history:
|
| 93 |
-
return "Nothing to save β chat is empty", gr.update()
|
| 94 |
-
if not session_name.strip():
|
| 95 |
-
session_name = "Session " + datetime.now().strftime("%Y-%m-%d %H:%M")
|
| 96 |
-
sessions = load_all_sessions()
|
| 97 |
-
sessions[session_name] = {
|
| 98 |
-
"messages": history,
|
| 99 |
-
"saved_at": datetime.now().isoformat(),
|
| 100 |
-
"message_count": len(history)
|
| 101 |
-
}
|
| 102 |
-
success = save_all_sessions(sessions)
|
| 103 |
-
if success:
|
| 104 |
-
return "Saved: " + session_name, gr.update(choices=get_session_list(), value=session_name)
|
| 105 |
-
return "Save failed β check HF_TOKEN in Space secrets", gr.update()
|
| 106 |
-
|
| 107 |
def delete_session(session_name):
|
| 108 |
-
if not session_name or session_name
|
| 109 |
-
return "No session selected", gr.update()
|
| 110 |
sessions = load_all_sessions()
|
| 111 |
if session_name in sessions:
|
| 112 |
del sessions[session_name]
|
| 113 |
save_all_sessions(sessions)
|
| 114 |
-
|
| 115 |
-
return "Deleted: "
|
| 116 |
-
return "
|
|
|
|
|
|
|
| 117 |
|
| 118 |
-
# ββ CHAT FUNCTIONS ββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 119 |
def get_pubmed(query, n=5):
|
| 120 |
try:
|
| 121 |
r = requests.get("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi",
|
|
@@ -139,18 +298,18 @@ def quick_search(query):
|
|
| 139 |
def research_chat(message, history):
|
| 140 |
if not GROQ_KEY:
|
| 141 |
history.append({"role":"user","content":message})
|
| 142 |
-
history.append({"role":"assistant","content":"Error: Add GROQ_API_KEY to Space Settings
|
| 143 |
return "", history
|
| 144 |
try:
|
| 145 |
client = Groq(api_key=GROQ_KEY)
|
| 146 |
-
msgs = [{"role":"system","content":"You are CardioLab AI. Expert in MHV MCL PIV TGT uPAD CKD FSI. Remember full conversation. Never invent URLs. "+KNOWHOW}]
|
| 147 |
for item in history:
|
| 148 |
if isinstance(item, dict): msgs.append({"role":item["role"],"content":item["content"]})
|
| 149 |
msgs.append({"role":"user","content":message})
|
| 150 |
resp = client.chat.completions.create(model="llama-3.3-70b-versatile",messages=msgs,max_tokens=700)
|
| 151 |
answer = resp.choices[0].message.content
|
| 152 |
pubmed = get_pubmed(message, n=3)
|
| 153 |
-
if pubmed: answer += chr(10)+chr(10)+"
|
| 154 |
history.append({"role":"user","content":message})
|
| 155 |
history.append({"role":"assistant","content":answer})
|
| 156 |
return "", history
|
|
@@ -172,14 +331,13 @@ def voice_chat(audio, history):
|
|
| 172 |
if isinstance(item, dict): msgs.append({"role":item["role"],"content":item["content"]})
|
| 173 |
msgs.append({"role":"user","content":tx.text})
|
| 174 |
resp = client.chat.completions.create(model="llama-3.3-70b-versatile",messages=msgs,max_tokens=500)
|
| 175 |
-
history.append({"role":"user","content":"
|
| 176 |
history.append({"role":"assistant","content":resp.choices[0].message.content})
|
| 177 |
return history
|
| 178 |
except Exception as e:
|
| 179 |
history.append({"role":"assistant","content":"Voice error: "+str(e)})
|
| 180 |
return history
|
| 181 |
|
| 182 |
-
# ββ ANALYSIS TOOLS ββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 183 |
def analyze_upad_photo(image):
|
| 184 |
if image is None: return None, "Upload a uPAD photo first."
|
| 185 |
try:
|
|
@@ -195,73 +353,62 @@ def analyze_upad_photo(image):
|
|
| 195 |
elif c<3.0: s,a="Stage 2 CKD","Consult nephrologist."
|
| 196 |
elif c<6.0: s,a="Stage 3-4 CKD","Immediate consultation."
|
| 197 |
else: s,a="Stage 5 CKD","Emergency care needed."
|
| 198 |
-
|
| 199 |
import PIL.ImageDraw as D
|
| 200 |
-
|
| 201 |
-
|
| 202 |
-
return result_img, ("uPAD ANALYSIS"+chr(10)+"β"*22+chr(10)+
|
| 203 |
-
"R:"+str(round(R,1))+" G:"+str(round(G,1))+" B:"+str(round(B,1))+chr(10)+
|
| 204 |
-
"Orange Score: "+str(round(R-B,1))+chr(10)+"β"*22+chr(10)+
|
| 205 |
-
"CREATININE: "+str(c)+" mg/dL"+chr(10)+"CKD STAGE: "+s+chr(10)+
|
| 206 |
-
"ACTION: "+a+chr(10)+"Confirm: Heska Element HT5")
|
| 207 |
except Exception as e: return None, "Error: "+str(e)
|
| 208 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 209 |
def analyze_piv_csv(file, theme="White"):
|
| 210 |
if file is None: return None,None,None,None,"Upload a PIV CSV file first."
|
| 211 |
try:
|
| 212 |
df = pd.read_csv(file.name)
|
| 213 |
-
cols = [c.lower().strip() for c in df.columns]
|
| 214 |
-
df.columns = cols
|
| 215 |
num_cols = df.select_dtypes(include=[np.number]).columns.tolist()
|
| 216 |
if not num_cols: return None,None,None,None,"No numeric columns found."
|
| 217 |
-
bg
|
| 218 |
-
|
| 219 |
-
|
| 220 |
-
|
| 221 |
-
|
| 222 |
-
|
| 223 |
-
|
| 224 |
-
|
| 225 |
-
tc = next((c for c in cols if "time" in c or "frame" in c), None)
|
| 226 |
-
xv = df[tc] if tc else x
|
| 227 |
-
def mk(fn, title):
|
| 228 |
-
fig2,ax = plt.subplots(figsize=(8,5))
|
| 229 |
-
fig2.patch.set_facecolor(bg); ax.set_facecolor(pb)
|
| 230 |
-
fn(ax)
|
| 231 |
-
ax.set_title(title, color=fg, fontweight="bold", fontsize=13, pad=8)
|
| 232 |
-
ax.tick_params(colors=ac, labelsize=10)
|
| 233 |
-
ax.grid(True, alpha=0.3, color=gc, linestyle="--")
|
| 234 |
-
for sp in ["top","right"]: ax.spines[sp].set_visible(False)
|
| 235 |
-
for sp in ["bottom","left"]: ax.spines[sp].set_color(gc)
|
| 236 |
-
plt.tight_layout()
|
| 237 |
-
buf2=io.BytesIO(); plt.savefig(buf2,format="png",facecolor=bg,bbox_inches="tight",dpi=130); buf2.seek(0)
|
| 238 |
-
res=Image.open(buf2).copy(); plt.close(); return res
|
| 239 |
def pv(ax):
|
| 240 |
if vc:
|
| 241 |
ax.plot(xv,df[vc],color="#e63946",linewidth=2.5,marker="o",markersize=5)
|
| 242 |
-
ax.fill_between(xv,df[vc],alpha=0.
|
| 243 |
ax.axhline(y=2.0,color="#f59e0b",linestyle="--",linewidth=2,label="Risk: 2.0 m/s")
|
| 244 |
-
ax.set_ylabel("Velocity (m/s)",color=ac,fontsize=11)
|
| 245 |
-
ax.set_xlabel(tc or "Sample",color=ac,fontsize=11)
|
| 246 |
ax.legend(fontsize=9,labelcolor=fg,facecolor=pb)
|
| 247 |
def ps(ax):
|
| 248 |
if sc:
|
| 249 |
-
xp
|
| 250 |
ax.plot(xp,df[sc],color="#4361ee",linewidth=2.5,marker="s",markersize=5)
|
| 251 |
-
ax.fill_between(xp,df[sc],alpha=0.
|
| 252 |
ax.axhline(y=5,color="#f59e0b",linestyle="--",linewidth=2,label="Caution: 5 Pa")
|
| 253 |
ax.axhline(y=10,color="#e63946",linestyle="--",linewidth=2,label="High risk: 10 Pa")
|
| 254 |
-
ax.set_ylabel("Shear Stress (Pa)",color=ac,fontsize=11)
|
| 255 |
-
ax.set_xlabel(tc or "Sample",color=ac,fontsize=11)
|
| 256 |
ax.legend(fontsize=9,labelcolor=fg,facecolor=pb)
|
| 257 |
def psc(ax):
|
| 258 |
if vc and sc:
|
| 259 |
-
s2
|
| 260 |
cb=plt.colorbar(s2,ax=ax,label="Time"); cb.ax.yaxis.label.set_color(fg); cb.ax.tick_params(colors=ac)
|
| 261 |
-
ax.axvline(x=2.0,color="#f59e0b",linestyle="--",linewidth=2,label="Vel risk")
|
| 262 |
-
ax.
|
| 263 |
-
ax.set_xlabel("Velocity (m/s)",color=ac,fontsize=11)
|
| 264 |
-
ax.set_ylabel("Shear Stress (Pa)",color=ac,fontsize=11)
|
| 265 |
ax.legend(fontsize=9,labelcolor=fg,facecolor=pb)
|
| 266 |
def psum(ax):
|
| 267 |
ax.axis("off"); risk=[]
|
|
@@ -269,85 +416,73 @@ def analyze_piv_csv(file, theme="White"):
|
|
| 269 |
for col in num_cols[:3]:
|
| 270 |
mn=round(df[col].mean(),3); mx=round(df[col].max(),3)
|
| 271 |
st+=col[:14]+":"+chr(10)+" Mean: "+str(mn)+chr(10)+" Max: "+str(mx)+chr(10)+chr(10)
|
| 272 |
-
if "vel" in col and mx>2.0: risk.append("HIGH VELOCITY
|
| 273 |
-
if "shear" in col and mx>10: risk.append("HIGH SHEAR
|
| 274 |
-
|
| 275 |
-
if risk:
|
| 276 |
-
st+="RISK FLAGS:"+chr(10)+"".join([" β "+r+chr(10) for r in risk])
|
| 277 |
-
st+="OVERALL: HIGH RISK"; bc="#e63946"
|
| 278 |
-
else:
|
| 279 |
-
st+="OVERALL: LOW RISK"; bc="#2ecc71"
|
| 280 |
ax.text(0.05,0.97,st,transform=ax.transAxes,color=fg,fontsize=10,va="top",fontfamily="monospace",
|
| 281 |
bbox=dict(boxstyle="round,pad=0.8",facecolor=pb,edgecolor=bc,linewidth=2.5))
|
| 282 |
-
i1=
|
| 283 |
-
|
|
|
|
|
|
|
| 284 |
ai=""
|
| 285 |
if GROQ_KEY:
|
| 286 |
try:
|
| 287 |
client=Groq(api_key=GROQ_KEY)
|
| 288 |
resp=client.chat.completions.create(model="llama-3.3-70b-versatile",
|
| 289 |
-
messages=[{"role":"system","content":"PIV expert SJSU CardioLab. Analyze
|
| 290 |
-
{"role":"user","content":"PIV
|
| 291 |
-
ai=chr(10)+"β"*20+chr(10)+"AI:"+
|
| 292 |
except: pass
|
| 293 |
-
return i1,i2,i3,i4,"PIV
|
| 294 |
except Exception as e: return None,None,None,None,"Error: "+str(e)
|
| 295 |
|
| 296 |
def analyze_tgt_csv(file, theme="White"):
|
| 297 |
if file is None: return None,None,None,None,"Upload a TGT CSV file first."
|
| 298 |
try:
|
| 299 |
df = pd.read_csv(file.name)
|
| 300 |
-
cols = [c.lower().strip() for c in df.columns]
|
| 301 |
-
df.columns = cols
|
| 302 |
num_cols = df.select_dtypes(include=[np.number]).columns.tolist()
|
| 303 |
-
bg="#
|
| 304 |
-
|
| 305 |
-
gc="#e2e8f0" if theme=="White" else "#2d4a8a"
|
| 306 |
-
ac="#4a5568" if theme=="White" else "#a8b2d8"
|
| 307 |
pb="#f7fafc" if theme=="White" else "#132340"
|
| 308 |
tc=next((c for c in cols if "time" in c or "min" in c),None)
|
| 309 |
tatc=next((c for c in cols if "tat" in c),num_cols[0] if num_cols else None)
|
| 310 |
pfc=next((c for c in cols if "pf" in c),num_cols[1] if len(num_cols)>1 else None)
|
| 311 |
-
hc=next((c for c in cols if "hemo" in c
|
| 312 |
plc=next((c for c in cols if "platelet" in c or "plt" in c),num_cols[3] if len(num_cols)>3 else None)
|
| 313 |
-
|
| 314 |
-
|
| 315 |
-
|
| 316 |
-
|
| 317 |
-
|
| 318 |
-
|
| 319 |
-
|
| 320 |
-
|
| 321 |
-
|
| 322 |
-
|
| 323 |
-
|
| 324 |
-
ax.
|
| 325 |
-
|
| 326 |
-
|
| 327 |
-
|
| 328 |
-
|
| 329 |
-
|
| 330 |
-
|
| 331 |
-
|
| 332 |
-
|
| 333 |
-
|
| 334 |
-
plt.tight_layout()
|
| 335 |
-
buf2=io.BytesIO(); plt.savefig(buf2,format="png",facecolor=bg,bbox_inches="tight",dpi=130); buf2.seek(0)
|
| 336 |
-
res=Image.open(buf2).copy(); plt.close(); return res
|
| 337 |
-
i1=mk(tatc,"#e63946","TAT (ng/mL)",8,"Normal: 8 ng/mL","Thrombin-Antithrombin TAT")
|
| 338 |
-
i2=mk(pfc,"#4361ee","PF1.2 (nmol/L)",2.0,"Normal: 2.0","Prothrombin Fragment PF1.2")
|
| 339 |
-
i3=mk(hc,"#2ecc71","Free Hemoglobin (mg/L)",20,"Normal: 20 mg/L","Free Hemoglobin Hemolysis",bar=True)
|
| 340 |
-
i4=mk(plc,"#e67e22","Platelet Count (10Β³/ΞΌL)",150,"Normal min: 150","Platelet Count")
|
| 341 |
ai=""
|
| 342 |
if GROQ_KEY:
|
| 343 |
try:
|
| 344 |
client=Groq(api_key=GROQ_KEY)
|
| 345 |
resp=client.chat.completions.create(model="llama-3.3-70b-versatile",
|
| 346 |
-
messages=[{"role":"system","content":"Hematology expert SJSU CardioLab.
|
| 347 |
-
{"role":"user","content":"TGT from 27mm SJM Regent
|
| 348 |
-
ai=chr(10)+"β"*20+chr(10)+"AI:"+
|
| 349 |
except: pass
|
| 350 |
-
return i1,i2,i3,i4,"TGT
|
| 351 |
except Exception as e: return None,None,None,None,"Error: "+str(e)
|
| 352 |
|
| 353 |
def generate_image(prompt):
|
|
@@ -360,7 +495,7 @@ def generate_image(prompt):
|
|
| 360 |
client=Groq(api_key=GROQ_KEY)
|
| 361 |
resp=client.chat.completions.create(model="llama-3.3-70b-versatile",
|
| 362 |
messages=[{"role":"system","content":"Format: DESCRIPTION: [2 sentences] PROMPT: [detailed image prompt]"},
|
| 363 |
-
{"role":"user","content":"Biomedical image
|
| 364 |
full=resp.choices[0].message.content
|
| 365 |
if "DESCRIPTION:" in full and "PROMPT:" in full:
|
| 366 |
desc=full.split("DESCRIPTION:")[1].split("PROMPT:")[0].strip()
|
|
@@ -377,75 +512,105 @@ def generate_image(prompt):
|
|
| 377 |
except Exception as e: return None,"Error: "+str(e),""
|
| 378 |
|
| 379 |
def piv_manual(v,s,h):
|
| 380 |
-
vr="HIGH
|
| 381 |
-
sr="HIGH
|
| 382 |
-
return "Velocity: "+str(v)+"
|
| 383 |
|
| 384 |
def tgt_manual(t,p,h,pl,tm):
|
| 385 |
risk=sum([float(t)>15,float(p)>2.0,float(h)>50,float(pl)<150])
|
| 386 |
-
return "TAT:"+str(t)+" PF1.2:"+str(p)+chr(10)+"Hemo:"+str(h)+" Plt:"+str(pl)+chr(10)+"Time:"+str(tm)+"min"+chr(10)+"RESULT: "+("HIGH RISK" if risk>=3 else "MODERATE" if risk>=2 else "LOW RISK")
|
| 387 |
|
| 388 |
-
# ββ UI βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 389 |
with gr.Blocks(title="CardioLab AI", css=CSS) as demo:
|
| 390 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 391 |
|
| 392 |
with gr.Tabs():
|
| 393 |
|
| 394 |
-
with gr.Tab("Chat"):
|
| 395 |
-
gr.Markdown("### Chat with memory β saves conversations like ChatGPT")
|
| 396 |
with gr.Row():
|
| 397 |
-
|
| 398 |
-
|
| 399 |
-
|
| 400 |
-
|
| 401 |
-
|
| 402 |
-
|
| 403 |
-
clear_btn = gr.Button("Clear", variant="secondary")
|
| 404 |
-
with gr.Column(scale=1, min_width=200):
|
| 405 |
-
gr.Markdown("### Saved Sessions")
|
| 406 |
session_dropdown = gr.Dropdown(
|
| 407 |
choices=get_session_list(),
|
| 408 |
-
label="
|
| 409 |
-
interactive=True
|
|
|
|
| 410 |
)
|
| 411 |
-
load_btn = gr.Button("
|
| 412 |
-
|
| 413 |
-
|
| 414 |
-
|
| 415 |
-
|
| 416 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 417 |
|
| 418 |
send_btn.click(research_chat, inputs=[msg_box, chatbot], outputs=[msg_box, chatbot])
|
| 419 |
msg_box.submit(research_chat, inputs=[msg_box, chatbot], outputs=[msg_box, chatbot])
|
| 420 |
clear_btn.click(lambda: ([], ""), outputs=[chatbot, msg_box])
|
|
|
|
| 421 |
save_btn.click(save_session, inputs=[chatbot, session_name_box], outputs=[session_status, session_dropdown])
|
| 422 |
load_btn.click(load_session, inputs=session_dropdown, outputs=[chatbot, session_status])
|
| 423 |
delete_btn.click(delete_session, inputs=session_dropdown, outputs=[session_status, session_dropdown])
|
| 424 |
|
| 425 |
-
with gr.Tab("Voice"):
|
| 426 |
-
voice_chatbot = gr.Chatbot(label="", height=320)
|
| 427 |
-
audio_input = gr.Audio(sources=["microphone"], type="filepath", label="Record Question")
|
| 428 |
with gr.Row():
|
| 429 |
-
|
| 430 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 431 |
voice_btn.click(voice_chat, inputs=[audio_input, voice_chatbot], outputs=voice_chatbot)
|
| 432 |
voice_clear.click(lambda: [], outputs=voice_chatbot)
|
| 433 |
|
| 434 |
-
with gr.Tab("Papers"):
|
| 435 |
with gr.Row():
|
| 436 |
-
search_input = gr.Textbox(placeholder="e.g. mechanical heart valve thrombogenicity", label="Research Topic", scale=4)
|
| 437 |
search_btn = gr.Button("Search", variant="primary", scale=1)
|
| 438 |
search_output = gr.Textbox(label="Verified Results", lines=18)
|
| 439 |
search_btn.click(quick_search, inputs=search_input, outputs=search_output)
|
| 440 |
search_input.submit(quick_search, inputs=search_input, outputs=search_output)
|
| 441 |
|
| 442 |
-
with gr.Tab("PIV CSV"):
|
| 443 |
-
gr.Markdown("
|
| 444 |
with gr.Row():
|
| 445 |
-
piv_file = gr.File(label="
|
| 446 |
piv_theme = gr.Radio(["White","Dark"], value="White", label="Theme", scale=1)
|
| 447 |
piv_btn = gr.Button("Analyze PIV Data", variant="primary")
|
| 448 |
-
piv_result = gr.Textbox(label="AI Analysis", lines=
|
| 449 |
with gr.Row():
|
| 450 |
piv_c1 = gr.Image(label="Velocity Profile", type="pil")
|
| 451 |
piv_c2 = gr.Image(label="Shear Stress", type="pil")
|
|
@@ -454,71 +619,66 @@ with gr.Blocks(title="CardioLab AI", css=CSS) as demo:
|
|
| 454 |
piv_c4 = gr.Image(label="Clinical Summary", type="pil")
|
| 455 |
piv_btn.click(analyze_piv_csv, inputs=[piv_file,piv_theme], outputs=[piv_c1,piv_c2,piv_c3,piv_c4,piv_result])
|
| 456 |
|
| 457 |
-
with gr.Tab("TGT CSV"):
|
| 458 |
-
gr.Markdown("
|
| 459 |
with gr.Row():
|
| 460 |
-
tgt_file = gr.File(label="
|
| 461 |
tgt_theme = gr.Radio(["White","Dark"], value="White", label="Theme", scale=1)
|
| 462 |
tgt_btn = gr.Button("Analyze TGT Data", variant="primary")
|
| 463 |
-
tgt_result = gr.Textbox(label="AI Assessment", lines=
|
| 464 |
with gr.Row():
|
| 465 |
-
tgt_c1 = gr.Image(label="TAT
|
| 466 |
-
tgt_c2 = gr.Image(label="PF1.2
|
| 467 |
with gr.Row():
|
| 468 |
-
tgt_c3 = gr.Image(label="
|
| 469 |
-
tgt_c4 = gr.Image(label="
|
| 470 |
tgt_btn.click(analyze_tgt_csv, inputs=[tgt_file,tgt_theme], outputs=[tgt_c1,tgt_c2,tgt_c3,tgt_c4,tgt_result])
|
| 471 |
|
| 472 |
-
with gr.Tab("
|
| 473 |
-
gr.Markdown("### Upload uPAD Photo β Instant CKD diagnosis")
|
| 474 |
with gr.Row():
|
| 475 |
with gr.Column():
|
| 476 |
photo_input = gr.Image(label="Upload uPAD Photo", type="numpy", height=280)
|
| 477 |
-
analyze_btn = gr.Button("Analyze uPAD", variant="primary")
|
| 478 |
with gr.Column():
|
| 479 |
-
photo_img = gr.Image(label="Detection Zone", type="pil", height=280)
|
| 480 |
photo_text = gr.Textbox(label="CKD Result", lines=10)
|
| 481 |
analyze_btn.click(analyze_upad_photo, inputs=photo_input, outputs=[photo_img, photo_text])
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 482 |
|
| 483 |
-
with gr.Tab("AI Image"):
|
| 484 |
with gr.Row():
|
| 485 |
-
img_prompt = gr.Textbox(placeholder="e.g. bileaflet heart valve
|
| 486 |
with gr.Column(scale=1):
|
| 487 |
-
img_btn = gr.Button("Generate", variant="primary")
|
| 488 |
img_status = gr.Textbox(label="Status", lines=1)
|
| 489 |
img_desc = gr.Textbox(label="AI Description", lines=2, interactive=False)
|
| 490 |
-
img_output = gr.Image(label="Generated Image", type="pil", height=
|
| 491 |
img_btn.click(generate_image, inputs=img_prompt, outputs=[img_output,img_status,img_desc])
|
| 492 |
|
| 493 |
-
with gr.Tab("PIV Manual"):
|
| 494 |
with gr.Row():
|
| 495 |
with gr.Column():
|
| 496 |
-
v=gr.Number(label="Max Velocity m/s",value=1.8)
|
| 497 |
-
s=gr.Number(label="Wall Shear Stress Pa",value=6.5)
|
| 498 |
-
h=gr.Number(label="Heart Rate bpm",value=72)
|
| 499 |
piv_out=gr.Textbox(label="Result",lines=4)
|
| 500 |
gr.Button("Analyze PIV",variant="primary").click(piv_manual,inputs=[v,s,h],outputs=piv_out)
|
| 501 |
|
| 502 |
-
with gr.Tab("TGT Manual"):
|
| 503 |
with gr.Row():
|
| 504 |
with gr.Column():
|
| 505 |
-
t1=gr.Number(label="TAT ng/mL",value=18)
|
| 506 |
-
t2=gr.Number(label="PF1.2",value=2.5)
|
| 507 |
-
t3=gr.Number(label="Hemoglobin mg/L",value=60)
|
| 508 |
-
t4=gr.Number(label="
|
| 509 |
-
t5=gr.Number(label="Time
|
| 510 |
out2=gr.Textbox(label="Result",lines=6)
|
| 511 |
gr.Button("Analyze TGT",variant="primary").click(tgt_manual,inputs=[t1,t2,t3,t4,t5],outputs=out2)
|
| 512 |
|
| 513 |
-
with gr.Tab("uPAD Manual"):
|
| 514 |
-
with gr.Row():
|
| 515 |
-
with gr.Column():
|
| 516 |
-
r=gr.Number(label="R value",value=210)
|
| 517 |
-
g=gr.Number(label="G value",value=140)
|
| 518 |
-
b=gr.Number(label="B value",value=80)
|
| 519 |
-
out3=gr.Textbox(label="Result",lines=4)
|
| 520 |
-
gr.Button("Analyze",variant="primary").click(
|
| 521 |
-
lambda r,g,b:"Creatinine: "+str(max(0,round(0.02*(r-b)-0.5,2)))+" mg/dL"+chr(10)+("Normal" if max(0,round(0.02*(r-b)-0.5,2))<1.2 else "Borderline" if max(0,round(0.02*(r-b)-0.5,2))<1.5 else "CKD Stage 2+"),
|
| 522 |
-
inputs=[r,g,b],outputs=out3)
|
| 523 |
-
|
| 524 |
demo.launch()
|
|
|
|
| 9 |
from PIL import Image
|
| 10 |
from datetime import datetime
|
| 11 |
from huggingface_hub import HfApi, hf_hub_download
|
|
|
|
| 12 |
|
| 13 |
GROQ_KEY = os.environ.get("GROQ_API_KEY", "")
|
| 14 |
HF_TOKEN = os.environ.get("HF_TOKEN", "")
|
|
|
|
| 21 |
"Equipment: Heska HT5 hematology analyzer time-resolved PIV Tygon tubing Arduino Uno.")
|
| 22 |
|
| 23 |
CSS = """
|
| 24 |
+
/* Reset and base */
|
| 25 |
+
body, .gradio-container {
|
| 26 |
+
background: #f7f7f8 !important;
|
| 27 |
+
font-family: -apple-system, BlinkMacSystemFont, Segoe UI, sans-serif !important;
|
| 28 |
+
margin: 0 !important;
|
| 29 |
+
padding: 0 !important;
|
| 30 |
+
}
|
| 31 |
+
|
| 32 |
+
/* Hide default gradio header */
|
| 33 |
+
.gradio-container > .main > .wrap > .panel {
|
| 34 |
+
border: none !important;
|
| 35 |
+
box-shadow: none !important;
|
| 36 |
+
}
|
| 37 |
+
|
| 38 |
+
/* CHATGPT STYLE SIDEBAR */
|
| 39 |
+
.sidebar {
|
| 40 |
+
background: #202123 !important;
|
| 41 |
+
min-height: 100vh !important;
|
| 42 |
+
padding: 10px !important;
|
| 43 |
+
border-right: 1px solid #3a3a3a !important;
|
| 44 |
+
}
|
| 45 |
+
|
| 46 |
+
.sidebar-title {
|
| 47 |
+
color: white !important;
|
| 48 |
+
font-size: 1.1em !important;
|
| 49 |
+
font-weight: 700 !important;
|
| 50 |
+
padding: 10px 5px !important;
|
| 51 |
+
border-bottom: 1px solid #3a3a3a !important;
|
| 52 |
+
margin-bottom: 10px !important;
|
| 53 |
+
}
|
| 54 |
+
|
| 55 |
+
.session-item {
|
| 56 |
+
background: #2d2d30 !important;
|
| 57 |
+
color: #ececf1 !important;
|
| 58 |
+
border-radius: 6px !important;
|
| 59 |
+
padding: 8px 12px !important;
|
| 60 |
+
margin-bottom: 4px !important;
|
| 61 |
+
cursor: pointer !important;
|
| 62 |
+
font-size: 0.85em !important;
|
| 63 |
+
}
|
| 64 |
+
|
| 65 |
+
.session-item:hover {
|
| 66 |
+
background: #3a3a3c !important;
|
| 67 |
+
}
|
| 68 |
+
|
| 69 |
+
/* TABS - TOP NAV STYLE */
|
| 70 |
+
.tab-nav {
|
| 71 |
+
background: #ffffff !important;
|
| 72 |
+
border-bottom: 1px solid #e5e7eb !important;
|
| 73 |
+
padding: 0 16px !important;
|
| 74 |
+
display: flex !important;
|
| 75 |
+
flex-wrap: nowrap !important;
|
| 76 |
+
overflow-x: auto !important;
|
| 77 |
+
gap: 0 !important;
|
| 78 |
+
}
|
| 79 |
+
|
| 80 |
+
.tab-nav button {
|
| 81 |
+
background: transparent !important;
|
| 82 |
+
color: #6b7280 !important;
|
| 83 |
+
border: none !important;
|
| 84 |
+
border-bottom: 2px solid transparent !important;
|
| 85 |
+
padding: 12px 16px !important;
|
| 86 |
+
font-weight: 500 !important;
|
| 87 |
+
font-size: 0.85em !important;
|
| 88 |
+
white-space: nowrap !important;
|
| 89 |
+
border-radius: 0 !important;
|
| 90 |
+
margin: 0 !important;
|
| 91 |
+
transition: all 0.15s !important;
|
| 92 |
+
}
|
| 93 |
+
|
| 94 |
+
.tab-nav button:hover {
|
| 95 |
+
color: #111827 !important;
|
| 96 |
+
background: #f9fafb !important;
|
| 97 |
+
}
|
| 98 |
+
|
| 99 |
+
.tab-nav button.selected {
|
| 100 |
+
color: #e63946 !important;
|
| 101 |
+
border-bottom: 2px solid #e63946 !important;
|
| 102 |
+
font-weight: 600 !important;
|
| 103 |
+
background: transparent !important;
|
| 104 |
+
}
|
| 105 |
+
|
| 106 |
+
/* MAIN CHAT AREA */
|
| 107 |
+
.chat-container {
|
| 108 |
+
background: #ffffff !important;
|
| 109 |
+
min-height: 80vh !important;
|
| 110 |
+
}
|
| 111 |
+
|
| 112 |
+
/* CHATBOT MESSAGES */
|
| 113 |
+
.chatbot {
|
| 114 |
+
background: #ffffff !important;
|
| 115 |
+
border: none !important;
|
| 116 |
+
border-radius: 0 !important;
|
| 117 |
+
}
|
| 118 |
+
|
| 119 |
+
.message.user {
|
| 120 |
+
background: #f7f7f8 !important;
|
| 121 |
+
color: #1a202c !important;
|
| 122 |
+
border-radius: 12px !important;
|
| 123 |
+
padding: 12px 16px !important;
|
| 124 |
+
margin: 4px 0 !important;
|
| 125 |
+
}
|
| 126 |
+
|
| 127 |
+
.message.bot {
|
| 128 |
+
background: #ffffff !important;
|
| 129 |
+
color: #1a202c !important;
|
| 130 |
+
border-radius: 12px !important;
|
| 131 |
+
padding: 12px 16px !important;
|
| 132 |
+
margin: 4px 0 !important;
|
| 133 |
+
border-left: 3px solid #e63946 !important;
|
| 134 |
+
}
|
| 135 |
+
|
| 136 |
+
/* INPUT AREA */
|
| 137 |
+
textarea {
|
| 138 |
+
background: #ffffff !important;
|
| 139 |
+
color: #1a202c !important;
|
| 140 |
+
border: 1px solid #d1d5db !important;
|
| 141 |
+
border-radius: 12px !important;
|
| 142 |
+
font-size: 0.95em !important;
|
| 143 |
+
padding: 12px !important;
|
| 144 |
+
box-shadow: 0 1px 3px rgba(0,0,0,0.1) !important;
|
| 145 |
+
}
|
| 146 |
+
|
| 147 |
+
textarea:focus {
|
| 148 |
+
border-color: #e63946 !important;
|
| 149 |
+
box-shadow: 0 0 0 2px rgba(230,57,70,0.1) !important;
|
| 150 |
+
outline: none !important;
|
| 151 |
+
}
|
| 152 |
+
|
| 153 |
+
/* BUTTONS */
|
| 154 |
+
button.primary {
|
| 155 |
+
background: #e63946 !important;
|
| 156 |
+
color: white !important;
|
| 157 |
+
border: none !important;
|
| 158 |
+
border-radius: 8px !important;
|
| 159 |
+
font-weight: 600 !important;
|
| 160 |
+
padding: 10px 20px !important;
|
| 161 |
+
transition: background 0.15s !important;
|
| 162 |
+
}
|
| 163 |
+
|
| 164 |
+
button.primary:hover {
|
| 165 |
+
background: #c1121f !important;
|
| 166 |
+
}
|
| 167 |
+
|
| 168 |
+
button.secondary {
|
| 169 |
+
background: #f3f4f6 !important;
|
| 170 |
+
color: #374151 !important;
|
| 171 |
+
border: 1px solid #d1d5db !important;
|
| 172 |
+
border-radius: 8px !important;
|
| 173 |
+
font-weight: 500 !important;
|
| 174 |
+
}
|
| 175 |
+
|
| 176 |
+
/* NEW CHAT BUTTON */
|
| 177 |
+
.new-chat-btn {
|
| 178 |
+
background: transparent !important;
|
| 179 |
+
color: #ececf1 !important;
|
| 180 |
+
border: 1px solid #3a3a3c !important;
|
| 181 |
+
border-radius: 6px !important;
|
| 182 |
+
padding: 8px 12px !important;
|
| 183 |
+
width: 100% !important;
|
| 184 |
+
text-align: left !important;
|
| 185 |
+
margin-bottom: 8px !important;
|
| 186 |
+
font-size: 0.85em !important;
|
| 187 |
+
}
|
| 188 |
+
|
| 189 |
+
/* DROPDOWN */
|
| 190 |
+
select, .gr-dropdown {
|
| 191 |
+
background: #2d2d30 !important;
|
| 192 |
+
color: #ececf1 !important;
|
| 193 |
+
border: 1px solid #3a3a3c !important;
|
| 194 |
+
border-radius: 6px !important;
|
| 195 |
+
}
|
| 196 |
+
|
| 197 |
+
/* INPUT NUMBERS */
|
| 198 |
+
input[type=number] {
|
| 199 |
+
background: #f9fafb !important;
|
| 200 |
+
color: #1a202c !important;
|
| 201 |
+
border: 1px solid #d1d5db !important;
|
| 202 |
+
border-radius: 8px !important;
|
| 203 |
+
}
|
| 204 |
+
|
| 205 |
+
/* LABELS */
|
| 206 |
+
label span {
|
| 207 |
+
color: #374151 !important;
|
| 208 |
+
font-weight: 500 !important;
|
| 209 |
+
font-size: 0.85em !important;
|
| 210 |
+
}
|
| 211 |
+
|
| 212 |
+
/* FILE UPLOAD */
|
| 213 |
+
.file-preview {
|
| 214 |
+
background: #f9fafb !important;
|
| 215 |
+
border: 2px dashed #d1d5db !important;
|
| 216 |
+
border-radius: 12px !important;
|
| 217 |
+
}
|
| 218 |
+
|
| 219 |
+
/* SCROLLBAR */
|
| 220 |
+
::-webkit-scrollbar { width: 6px; height: 6px; }
|
| 221 |
+
::-webkit-scrollbar-track { background: transparent; }
|
| 222 |
+
::-webkit-scrollbar-thumb { background: #d1d5db; border-radius: 3px; }
|
| 223 |
+
::-webkit-scrollbar-thumb:hover { background: #9ca3af; }
|
| 224 |
"""
|
| 225 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 226 |
def load_all_sessions():
|
| 227 |
if not HF_TOKEN: return {}
|
| 228 |
try:
|
| 229 |
+
path = hf_hub_download(repo_id=HISTORY_REPO, filename="chat_history.json", repo_type="dataset", token=HF_TOKEN)
|
| 230 |
+
with open(path, "r") as f: return json.load(f)
|
| 231 |
+
except: return {}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 232 |
|
| 233 |
def save_all_sessions(sessions):
|
| 234 |
if not HF_TOKEN: return False
|
| 235 |
try:
|
| 236 |
+
api = HfApi(token=HF_TOKEN)
|
| 237 |
+
api.upload_file(path_or_fileobj=json.dumps(sessions, indent=2).encode(), path_in_repo="chat_history.json",
|
| 238 |
+
repo_id=HISTORY_REPO, repo_type="dataset", token=HF_TOKEN, commit_message="Update chat history")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 239 |
return True
|
| 240 |
+
except: return False
|
|
|
|
|
|
|
| 241 |
|
| 242 |
def get_session_list():
|
| 243 |
sessions = load_all_sessions()
|
| 244 |
+
if not sessions: return ["No saved sessions"]
|
| 245 |
+
return list(reversed(list(sessions.keys())))
|
| 246 |
+
|
| 247 |
+
def save_session(history, session_name):
|
| 248 |
+
if not history: return "Nothing to save", gr.update()
|
| 249 |
+
if not session_name or not session_name.strip():
|
| 250 |
+
session_name = "Chat " + datetime.now().strftime("%b %d %H:%M")
|
| 251 |
+
sessions = load_all_sessions()
|
| 252 |
+
sessions[session_name] = {"messages": history, "saved_at": datetime.now().isoformat()}
|
| 253 |
+
ok = save_all_sessions(sessions)
|
| 254 |
+
choices = get_session_list()
|
| 255 |
+
if ok: return "Saved: "+session_name, gr.update(choices=choices, value=session_name)
|
| 256 |
+
return "Save failed β check HF_TOKEN", gr.update()
|
| 257 |
|
| 258 |
def load_session(session_name):
|
| 259 |
+
if not session_name or "No saved" in session_name: return [], "Select a session first"
|
|
|
|
| 260 |
sessions = load_all_sessions()
|
| 261 |
if session_name in sessions:
|
| 262 |
+
msgs = sessions[session_name]["messages"]
|
| 263 |
+
return msgs, "Loaded: "+session_name
|
| 264 |
return [], "Session not found"
|
| 265 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 266 |
def delete_session(session_name):
|
| 267 |
+
if not session_name or "No saved" in session_name: return "Select a session first", gr.update()
|
|
|
|
| 268 |
sessions = load_all_sessions()
|
| 269 |
if session_name in sessions:
|
| 270 |
del sessions[session_name]
|
| 271 |
save_all_sessions(sessions)
|
| 272 |
+
choices = get_session_list()
|
| 273 |
+
return "Deleted: "+session_name, gr.update(choices=choices, value=choices[0] if choices else None)
|
| 274 |
+
return "Not found", gr.update()
|
| 275 |
+
|
| 276 |
+
def new_chat(): return [], "", "New chat started"
|
| 277 |
|
|
|
|
| 278 |
def get_pubmed(query, n=5):
|
| 279 |
try:
|
| 280 |
r = requests.get("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi",
|
|
|
|
| 298 |
def research_chat(message, history):
|
| 299 |
if not GROQ_KEY:
|
| 300 |
history.append({"role":"user","content":message})
|
| 301 |
+
history.append({"role":"assistant","content":"Error: Add GROQ_API_KEY to Space Settings."})
|
| 302 |
return "", history
|
| 303 |
try:
|
| 304 |
client = Groq(api_key=GROQ_KEY)
|
| 305 |
+
msgs = [{"role":"system","content":"You are CardioLab AI assistant for SJSU Biomedical Engineering. Expert in MHV MCL PIV TGT uPAD CKD FSI. Remember full conversation. Never invent URLs. "+KNOWHOW}]
|
| 306 |
for item in history:
|
| 307 |
if isinstance(item, dict): msgs.append({"role":item["role"],"content":item["content"]})
|
| 308 |
msgs.append({"role":"user","content":message})
|
| 309 |
resp = client.chat.completions.create(model="llama-3.3-70b-versatile",messages=msgs,max_tokens=700)
|
| 310 |
answer = resp.choices[0].message.content
|
| 311 |
pubmed = get_pubmed(message, n=3)
|
| 312 |
+
if pubmed: answer += chr(10)+chr(10)+"π PubMed:"+chr(10)+pubmed
|
| 313 |
history.append({"role":"user","content":message})
|
| 314 |
history.append({"role":"assistant","content":answer})
|
| 315 |
return "", history
|
|
|
|
| 331 |
if isinstance(item, dict): msgs.append({"role":item["role"],"content":item["content"]})
|
| 332 |
msgs.append({"role":"user","content":tx.text})
|
| 333 |
resp = client.chat.completions.create(model="llama-3.3-70b-versatile",messages=msgs,max_tokens=500)
|
| 334 |
+
history.append({"role":"user","content":"ποΈ "+tx.text})
|
| 335 |
history.append({"role":"assistant","content":resp.choices[0].message.content})
|
| 336 |
return history
|
| 337 |
except Exception as e:
|
| 338 |
history.append({"role":"assistant","content":"Voice error: "+str(e)})
|
| 339 |
return history
|
| 340 |
|
|
|
|
| 341 |
def analyze_upad_photo(image):
|
| 342 |
if image is None: return None, "Upload a uPAD photo first."
|
| 343 |
try:
|
|
|
|
| 353 |
elif c<3.0: s,a="Stage 2 CKD","Consult nephrologist."
|
| 354 |
elif c<6.0: s,a="Stage 3-4 CKD","Immediate consultation."
|
| 355 |
else: s,a="Stage 5 CKD","Emergency care needed."
|
| 356 |
+
ri = img.copy()
|
| 357 |
import PIL.ImageDraw as D
|
| 358 |
+
D.Draw(ri).rectangle([x1,y1,x2,y2], outline=(0,255,0), width=3)
|
| 359 |
+
return ri, ("uPAD ANALYSIS"+chr(10)+"β"*22+chr(10)+"R:"+str(round(R,1))+" G:"+str(round(G,1))+" B:"+str(round(B,1))+chr(10)+"Creatinine: "+str(c)+" mg/dL"+chr(10)+"Stage: "+s+chr(10)+"Action: "+a)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 360 |
except Exception as e: return None, "Error: "+str(e)
|
| 361 |
|
| 362 |
+
def mk_chart(fn, title, bg, fg, gc, ac, pb):
|
| 363 |
+
fig2,ax = plt.subplots(figsize=(8,5))
|
| 364 |
+
fig2.patch.set_facecolor(bg); ax.set_facecolor(pb)
|
| 365 |
+
fn(ax)
|
| 366 |
+
ax.set_title(title, color=fg, fontweight="bold", fontsize=13, pad=8)
|
| 367 |
+
ax.tick_params(colors=ac, labelsize=10)
|
| 368 |
+
ax.grid(True, alpha=0.3, color=gc, linestyle="--")
|
| 369 |
+
for sp in ["top","right"]: ax.spines[sp].set_visible(False)
|
| 370 |
+
for sp in ["bottom","left"]: ax.spines[sp].set_color(gc)
|
| 371 |
+
plt.tight_layout()
|
| 372 |
+
buf=io.BytesIO(); plt.savefig(buf,format="png",facecolor=bg,bbox_inches="tight",dpi=130); buf.seek(0)
|
| 373 |
+
res=Image.open(buf).copy(); plt.close(); return res
|
| 374 |
+
|
| 375 |
def analyze_piv_csv(file, theme="White"):
|
| 376 |
if file is None: return None,None,None,None,"Upload a PIV CSV file first."
|
| 377 |
try:
|
| 378 |
df = pd.read_csv(file.name)
|
| 379 |
+
cols = [c.lower().strip() for c in df.columns]; df.columns = cols
|
|
|
|
| 380 |
num_cols = df.select_dtypes(include=[np.number]).columns.tolist()
|
| 381 |
if not num_cols: return None,None,None,None,"No numeric columns found."
|
| 382 |
+
bg="#fff" if theme=="White" else "#0a1628"; fg="#1a202c" if theme=="White" else "white"
|
| 383 |
+
gc="#e2e8f0" if theme=="White" else "#2d4a8a"; ac="#4a5568" if theme=="White" else "#a8b2d8"
|
| 384 |
+
pb="#f7fafc" if theme=="White" else "#132340"
|
| 385 |
+
x=np.arange(len(df))
|
| 386 |
+
vc=next((c for c in cols if any(k in c for k in ["vel","speed","v_mag"])),num_cols[0] if num_cols else None)
|
| 387 |
+
sc=next((c for c in cols if any(k in c for k in ["shear","stress","tau","wss"])),num_cols[1] if len(num_cols)>1 else None)
|
| 388 |
+
tc=next((c for c in cols if "time" in c or "frame" in c),None)
|
| 389 |
+
xv=df[tc] if tc else x
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 390 |
def pv(ax):
|
| 391 |
if vc:
|
| 392 |
ax.plot(xv,df[vc],color="#e63946",linewidth=2.5,marker="o",markersize=5)
|
| 393 |
+
ax.fill_between(xv,df[vc],alpha=0.15,color="#e63946")
|
| 394 |
ax.axhline(y=2.0,color="#f59e0b",linestyle="--",linewidth=2,label="Risk: 2.0 m/s")
|
| 395 |
+
ax.set_ylabel("Velocity (m/s)",color=ac,fontsize=11); ax.set_xlabel(tc or "Sample",color=ac,fontsize=11)
|
|
|
|
| 396 |
ax.legend(fontsize=9,labelcolor=fg,facecolor=pb)
|
| 397 |
def ps(ax):
|
| 398 |
if sc:
|
| 399 |
+
xp=xv.values if tc else x
|
| 400 |
ax.plot(xp,df[sc],color="#4361ee",linewidth=2.5,marker="s",markersize=5)
|
| 401 |
+
ax.fill_between(xp,df[sc],alpha=0.15,color="#4361ee")
|
| 402 |
ax.axhline(y=5,color="#f59e0b",linestyle="--",linewidth=2,label="Caution: 5 Pa")
|
| 403 |
ax.axhline(y=10,color="#e63946",linestyle="--",linewidth=2,label="High risk: 10 Pa")
|
| 404 |
+
ax.set_ylabel("Shear Stress (Pa)",color=ac,fontsize=11); ax.set_xlabel(tc or "Sample",color=ac,fontsize=11)
|
|
|
|
| 405 |
ax.legend(fontsize=9,labelcolor=fg,facecolor=pb)
|
| 406 |
def psc(ax):
|
| 407 |
if vc and sc:
|
| 408 |
+
s2=ax.scatter(df[vc],df[sc],c=x,cmap="RdYlGn_r",s=90,edgecolors=fg,linewidth=0.5,zorder=5)
|
| 409 |
cb=plt.colorbar(s2,ax=ax,label="Time"); cb.ax.yaxis.label.set_color(fg); cb.ax.tick_params(colors=ac)
|
| 410 |
+
ax.axvline(x=2.0,color="#f59e0b",linestyle="--",linewidth=2,label="Vel risk"); ax.axhline(y=10,color="#e63946",linestyle="--",linewidth=2,label="Shear risk")
|
| 411 |
+
ax.set_xlabel("Velocity (m/s)",color=ac,fontsize=11); ax.set_ylabel("Shear (Pa)",color=ac,fontsize=11)
|
|
|
|
|
|
|
| 412 |
ax.legend(fontsize=9,labelcolor=fg,facecolor=pb)
|
| 413 |
def psum(ax):
|
| 414 |
ax.axis("off"); risk=[]
|
|
|
|
| 416 |
for col in num_cols[:3]:
|
| 417 |
mn=round(df[col].mean(),3); mx=round(df[col].max(),3)
|
| 418 |
st+=col[:14]+":"+chr(10)+" Mean: "+str(mn)+chr(10)+" Max: "+str(mx)+chr(10)+chr(10)
|
| 419 |
+
if "vel" in col and mx>2.0: risk.append("HIGH VELOCITY")
|
| 420 |
+
if "shear" in col and mx>10: risk.append("HIGH SHEAR")
|
| 421 |
+
bc="#e63946" if risk else "#2ecc71"
|
| 422 |
+
st+="β"*20+chr(10)+("OVERALL: HIGH RISK" if risk else "OVERALL: LOW RISK")
|
|
|
|
|
|
|
|
|
|
|
|
|
| 423 |
ax.text(0.05,0.97,st,transform=ax.transAxes,color=fg,fontsize=10,va="top",fontfamily="monospace",
|
| 424 |
bbox=dict(boxstyle="round,pad=0.8",facecolor=pb,edgecolor=bc,linewidth=2.5))
|
| 425 |
+
i1=mk_chart(pv,"Velocity Profile",bg,fg,gc,ac,pb)
|
| 426 |
+
i2=mk_chart(ps,"Wall Shear Stress",bg,fg,gc,ac,pb)
|
| 427 |
+
i3=mk_chart(psc,"Velocity vs Shear",bg,fg,gc,ac,pb)
|
| 428 |
+
i4=mk_chart(psum,"Clinical Summary",bg,fg,gc,ac,pb)
|
| 429 |
ai=""
|
| 430 |
if GROQ_KEY:
|
| 431 |
try:
|
| 432 |
client=Groq(api_key=GROQ_KEY)
|
| 433 |
resp=client.chat.completions.create(model="llama-3.3-70b-versatile",
|
| 434 |
+
messages=[{"role":"system","content":"PIV expert SJSU CardioLab. Analyze stats give clinical interpretation."},
|
| 435 |
+
{"role":"user","content":"PIV from 27mm SJM Regent MHV 70bpm:"+chr(10)+df.describe().to_string()[:500]}],max_tokens=250)
|
| 436 |
+
ai=chr(10)+"β"*20+chr(10)+"AI: "+resp.choices[0].message.content
|
| 437 |
except: pass
|
| 438 |
+
return i1,i2,i3,i4,"PIV: "+str(len(df))+" rows | "+", ".join(df.columns.tolist())+ai
|
| 439 |
except Exception as e: return None,None,None,None,"Error: "+str(e)
|
| 440 |
|
| 441 |
def analyze_tgt_csv(file, theme="White"):
|
| 442 |
if file is None: return None,None,None,None,"Upload a TGT CSV file first."
|
| 443 |
try:
|
| 444 |
df = pd.read_csv(file.name)
|
| 445 |
+
cols = [c.lower().strip() for c in df.columns]; df.columns = cols
|
|
|
|
| 446 |
num_cols = df.select_dtypes(include=[np.number]).columns.tolist()
|
| 447 |
+
bg="#fff" if theme=="White" else "#0a1628"; fg="#1a202c" if theme=="White" else "white"
|
| 448 |
+
gc="#e2e8f0" if theme=="White" else "#2d4a8a"; ac="#4a5568" if theme=="White" else "#a8b2d8"
|
|
|
|
|
|
|
| 449 |
pb="#f7fafc" if theme=="White" else "#132340"
|
| 450 |
tc=next((c for c in cols if "time" in c or "min" in c),None)
|
| 451 |
tatc=next((c for c in cols if "tat" in c),num_cols[0] if num_cols else None)
|
| 452 |
pfc=next((c for c in cols if "pf" in c),num_cols[1] if len(num_cols)>1 else None)
|
| 453 |
+
hc=next((c for c in cols if "hemo" in c),num_cols[2] if len(num_cols)>2 else None)
|
| 454 |
plc=next((c for c in cols if "platelet" in c or "plt" in c),num_cols[3] if len(num_cols)>3 else None)
|
| 455 |
+
def mk2(dc,color,yl,lim,ll,title,bar=False):
|
| 456 |
+
def fn(ax):
|
| 457 |
+
if dc and dc in df.columns:
|
| 458 |
+
xp=df[tc].values if tc else range(len(df)); yp=df[dc].values
|
| 459 |
+
if bar:
|
| 460 |
+
bs=ax.bar(range(len(yp)),yp,color=color,alpha=0.85,edgecolor=bg,width=0.6)
|
| 461 |
+
for b,v in zip(bs,yp): ax.text(b.get_x()+b.get_width()/2,b.get_height()+0.5,str(round(v,1)),ha="center",va="bottom",color=fg,fontsize=10,fontweight="bold")
|
| 462 |
+
else:
|
| 463 |
+
ax.plot(xp,yp,color=color,linewidth=3,marker="o",markersize=8)
|
| 464 |
+
ax.fill_between(xp,yp,alpha=0.15,color=color)
|
| 465 |
+
for xi,yi in zip(xp,yp): ax.annotate(str(round(yi,1)),(xi,yi),textcoords="offset points",xytext=(0,10),ha="center",color=fg,fontsize=10,fontweight="bold")
|
| 466 |
+
ax.axhline(y=lim,color="#f59e0b",linestyle="--",linewidth=2.5,label=ll)
|
| 467 |
+
ax.legend(fontsize=10,labelcolor=fg,facecolor=pb)
|
| 468 |
+
ax.set_ylabel(yl,color=ac,fontsize=11); ax.set_xlabel(tc or "Sample",color=ac,fontsize=11)
|
| 469 |
+
mv=round(float(np.max(yp)),2); st="HIGH" if mv>lim else "NORMAL"
|
| 470 |
+
ax.set_title(title+chr(10)+"Max: "+str(mv)+" Status: "+st,color=fg,fontweight="bold",fontsize=12)
|
| 471 |
+
return mk_chart(fn,title,bg,fg,gc,ac,pb)
|
| 472 |
+
i1=mk2(tatc,"#e63946","TAT (ng/mL)",8,"Normal: 8","TAT Thrombin-Antithrombin")
|
| 473 |
+
i2=mk2(pfc,"#4361ee","PF1.2 (nmol/L)",2.0,"Normal: 2.0","PF1.2 Prothrombin Fragment")
|
| 474 |
+
i3=mk2(hc,"#2ecc71","Free Hemoglobin (mg/L)",20,"Normal: 20","Free Hemoglobin",bar=True)
|
| 475 |
+
i4=mk2(plc,"#e67e22","Platelet Count",150,"Normal min: 150","Platelet Count")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 476 |
ai=""
|
| 477 |
if GROQ_KEY:
|
| 478 |
try:
|
| 479 |
client=Groq(api_key=GROQ_KEY)
|
| 480 |
resp=client.chat.completions.create(model="llama-3.3-70b-versatile",
|
| 481 |
+
messages=[{"role":"system","content":"Hematology expert SJSU CardioLab. Give thrombogenicity risk LOW MODERATE or HIGH. Normal: TAT<8, PF1.2<2.0, Hemo<20, Plt>150."},
|
| 482 |
+
{"role":"user","content":"TGT from 27mm SJM Regent:"+chr(10)+df.describe().to_string()[:500]}],max_tokens=250)
|
| 483 |
+
ai=chr(10)+"β"*20+chr(10)+"AI: "+resp.choices[0].message.content
|
| 484 |
except: pass
|
| 485 |
+
return i1,i2,i3,i4,"TGT: "+str(len(df))+" rows | "+", ".join(df.columns.tolist())+ai
|
| 486 |
except Exception as e: return None,None,None,None,"Error: "+str(e)
|
| 487 |
|
| 488 |
def generate_image(prompt):
|
|
|
|
| 495 |
client=Groq(api_key=GROQ_KEY)
|
| 496 |
resp=client.chat.completions.create(model="llama-3.3-70b-versatile",
|
| 497 |
messages=[{"role":"system","content":"Format: DESCRIPTION: [2 sentences] PROMPT: [detailed image prompt]"},
|
| 498 |
+
{"role":"user","content":"Biomedical image: "+prompt}],max_tokens=200)
|
| 499 |
full=resp.choices[0].message.content
|
| 500 |
if "DESCRIPTION:" in full and "PROMPT:" in full:
|
| 501 |
desc=full.split("DESCRIPTION:")[1].split("PROMPT:")[0].strip()
|
|
|
|
| 512 |
except Exception as e: return None,"Error: "+str(e),""
|
| 513 |
|
| 514 |
def piv_manual(v,s,h):
|
| 515 |
+
vr="HIGH β stenosis risk" if float(v)>2.0 else "NORMAL"
|
| 516 |
+
sr="HIGH β thrombosis risk" if float(s)>10 else "ELEVATED" if float(s)>5 else "NORMAL"
|
| 517 |
+
return "Velocity: "+str(v)+" m/s β "+vr+chr(10)+"Shear: "+str(s)+" Pa β "+sr+chr(10)+"HR: "+str(h)+" bpm"
|
| 518 |
|
| 519 |
def tgt_manual(t,p,h,pl,tm):
|
| 520 |
risk=sum([float(t)>15,float(p)>2.0,float(h)>50,float(pl)<150])
|
| 521 |
+
return "TAT:"+str(t)+" PF1.2:"+str(p)+chr(10)+"Hemo:"+str(h)+" Plt:"+str(pl)+chr(10)+"Time:"+str(tm)+" min"+chr(10)+"RESULT: "+("HIGH RISK" if risk>=3 else "MODERATE" if risk>=2 else "LOW RISK")
|
| 522 |
|
|
|
|
| 523 |
with gr.Blocks(title="CardioLab AI", css=CSS) as demo:
|
| 524 |
+
|
| 525 |
+
gr.HTML("""
|
| 526 |
+
<div style="background:linear-gradient(135deg,#1a237e 0%,#b71c1c 100%);padding:16px 24px;display:flex;align-items:center;gap:16px;">
|
| 527 |
+
<div style="font-size:1.8em;font-weight:900;color:#fff;letter-spacing:2px;">β€οΈ CardioLab AI</div>
|
| 528 |
+
<div style="color:rgba(255,255,255,0.7);font-size:0.85em;">SJSU Biomedical Engineering</div>
|
| 529 |
+
</div>
|
| 530 |
+
""")
|
| 531 |
|
| 532 |
with gr.Tabs():
|
| 533 |
|
| 534 |
+
with gr.Tab("π¬ Chat"):
|
|
|
|
| 535 |
with gr.Row():
|
| 536 |
+
|
| 537 |
+
# LEFT SIDEBAR - ChatGPT style
|
| 538 |
+
with gr.Column(scale=1, min_width=220):
|
| 539 |
+
gr.HTML('<div style="background:#202123;padding:12px;border-radius:8px;margin-bottom:8px;"><div style="color:white;font-weight:700;font-size:0.9em;margin-bottom:8px;">π¬ Conversations</div></div>')
|
| 540 |
+
new_chat_btn = gr.Button("βοΈ New Chat", variant="secondary")
|
| 541 |
+
gr.HTML('<div style="color:#9ca3af;font-size:0.75em;padding:8px 0 4px 0;">SAVED SESSIONS</div>')
|
|
|
|
|
|
|
|
|
|
| 542 |
session_dropdown = gr.Dropdown(
|
| 543 |
choices=get_session_list(),
|
| 544 |
+
label="",
|
| 545 |
+
interactive=True,
|
| 546 |
+
container=False
|
| 547 |
)
|
| 548 |
+
load_btn = gr.Button("π Load", variant="primary")
|
| 549 |
+
session_name_box = gr.Textbox(
|
| 550 |
+
placeholder="Session name...",
|
| 551 |
+
label="",
|
| 552 |
+
lines=1,
|
| 553 |
+
container=False
|
| 554 |
+
)
|
| 555 |
+
with gr.Row():
|
| 556 |
+
save_btn = gr.Button("πΎ Save", variant="primary", scale=1)
|
| 557 |
+
delete_btn = gr.Button("ποΈ", variant="secondary", scale=0)
|
| 558 |
+
session_status = gr.Textbox(label="", lines=1, interactive=False, container=False)
|
| 559 |
+
|
| 560 |
+
# RIGHT - Main chat area
|
| 561 |
+
with gr.Column(scale=4):
|
| 562 |
+
chatbot = gr.Chatbot(
|
| 563 |
+
label="",
|
| 564 |
+
height=520,
|
| 565 |
+
show_label=False,
|
| 566 |
+
container=False
|
| 567 |
+
)
|
| 568 |
+
with gr.Row():
|
| 569 |
+
msg_box = gr.Textbox(
|
| 570 |
+
placeholder="Message CardioLab AI...",
|
| 571 |
+
label="",
|
| 572 |
+
lines=2,
|
| 573 |
+
scale=5,
|
| 574 |
+
container=False
|
| 575 |
+
)
|
| 576 |
+
with gr.Column(scale=1, min_width=80):
|
| 577 |
+
send_btn = gr.Button("Send β", variant="primary")
|
| 578 |
+
clear_btn = gr.Button("Clear", variant="secondary")
|
| 579 |
|
| 580 |
send_btn.click(research_chat, inputs=[msg_box, chatbot], outputs=[msg_box, chatbot])
|
| 581 |
msg_box.submit(research_chat, inputs=[msg_box, chatbot], outputs=[msg_box, chatbot])
|
| 582 |
clear_btn.click(lambda: ([], ""), outputs=[chatbot, msg_box])
|
| 583 |
+
new_chat_btn.click(new_chat, outputs=[chatbot, msg_box, session_status])
|
| 584 |
save_btn.click(save_session, inputs=[chatbot, session_name_box], outputs=[session_status, session_dropdown])
|
| 585 |
load_btn.click(load_session, inputs=session_dropdown, outputs=[chatbot, session_status])
|
| 586 |
delete_btn.click(delete_session, inputs=session_dropdown, outputs=[session_status, session_dropdown])
|
| 587 |
|
| 588 |
+
with gr.Tab("ποΈ Voice"):
|
|
|
|
|
|
|
| 589 |
with gr.Row():
|
| 590 |
+
with gr.Column():
|
| 591 |
+
voice_chatbot = gr.Chatbot(label="", height=400, show_label=False)
|
| 592 |
+
audio_input = gr.Audio(sources=["microphone"], type="filepath", label="Record Question")
|
| 593 |
+
with gr.Row():
|
| 594 |
+
voice_btn = gr.Button("Ask by Voice", variant="primary")
|
| 595 |
+
voice_clear = gr.Button("Clear", variant="secondary")
|
| 596 |
voice_btn.click(voice_chat, inputs=[audio_input, voice_chatbot], outputs=voice_chatbot)
|
| 597 |
voice_clear.click(lambda: [], outputs=voice_chatbot)
|
| 598 |
|
| 599 |
+
with gr.Tab("π Papers"):
|
| 600 |
with gr.Row():
|
| 601 |
+
search_input = gr.Textbox(placeholder="e.g. mechanical heart valve thrombogenicity 2024", label="Research Topic", scale=4)
|
| 602 |
search_btn = gr.Button("Search", variant="primary", scale=1)
|
| 603 |
search_output = gr.Textbox(label="Verified Results", lines=18)
|
| 604 |
search_btn.click(quick_search, inputs=search_input, outputs=search_output)
|
| 605 |
search_input.submit(quick_search, inputs=search_input, outputs=search_output)
|
| 606 |
|
| 607 |
+
with gr.Tab("π PIV CSV"):
|
| 608 |
+
gr.Markdown("Upload PIV CSV β 4 separate charts + AI clinical analysis")
|
| 609 |
with gr.Row():
|
| 610 |
+
piv_file = gr.File(label="Upload PIV CSV", file_types=[".csv"], scale=3)
|
| 611 |
piv_theme = gr.Radio(["White","Dark"], value="White", label="Theme", scale=1)
|
| 612 |
piv_btn = gr.Button("Analyze PIV Data", variant="primary")
|
| 613 |
+
piv_result = gr.Textbox(label="AI Analysis", lines=4)
|
| 614 |
with gr.Row():
|
| 615 |
piv_c1 = gr.Image(label="Velocity Profile", type="pil")
|
| 616 |
piv_c2 = gr.Image(label="Shear Stress", type="pil")
|
|
|
|
| 619 |
piv_c4 = gr.Image(label="Clinical Summary", type="pil")
|
| 620 |
piv_btn.click(analyze_piv_csv, inputs=[piv_file,piv_theme], outputs=[piv_c1,piv_c2,piv_c3,piv_c4,piv_result])
|
| 621 |
|
| 622 |
+
with gr.Tab("π©Έ TGT CSV"):
|
| 623 |
+
gr.Markdown("Upload TGT CSV β blood biomarker charts + thrombogenicity assessment")
|
| 624 |
with gr.Row():
|
| 625 |
+
tgt_file = gr.File(label="Upload TGT CSV", file_types=[".csv"], scale=3)
|
| 626 |
tgt_theme = gr.Radio(["White","Dark"], value="White", label="Theme", scale=1)
|
| 627 |
tgt_btn = gr.Button("Analyze TGT Data", variant="primary")
|
| 628 |
+
tgt_result = gr.Textbox(label="AI Assessment", lines=4)
|
| 629 |
with gr.Row():
|
| 630 |
+
tgt_c1 = gr.Image(label="TAT", type="pil")
|
| 631 |
+
tgt_c2 = gr.Image(label="PF1.2", type="pil")
|
| 632 |
with gr.Row():
|
| 633 |
+
tgt_c3 = gr.Image(label="Hemoglobin", type="pil")
|
| 634 |
+
tgt_c4 = gr.Image(label="Platelets", type="pil")
|
| 635 |
tgt_btn.click(analyze_tgt_csv, inputs=[tgt_file,tgt_theme], outputs=[tgt_c1,tgt_c2,tgt_c3,tgt_c4,tgt_result])
|
| 636 |
|
| 637 |
+
with gr.Tab("π§ͺ uPAD"):
|
|
|
|
| 638 |
with gr.Row():
|
| 639 |
with gr.Column():
|
| 640 |
photo_input = gr.Image(label="Upload uPAD Photo", type="numpy", height=280)
|
| 641 |
+
analyze_btn = gr.Button("Analyze uPAD Photo", variant="primary")
|
| 642 |
with gr.Column():
|
| 643 |
+
photo_img = gr.Image(label="Detection Zone (green box)", type="pil", height=280)
|
| 644 |
photo_text = gr.Textbox(label="CKD Result", lines=10)
|
| 645 |
analyze_btn.click(analyze_upad_photo, inputs=photo_input, outputs=[photo_img, photo_text])
|
| 646 |
+
gr.Markdown("**Manual RGB entry:**")
|
| 647 |
+
with gr.Row():
|
| 648 |
+
r=gr.Number(label="R",value=210); g=gr.Number(label="G",value=140); b=gr.Number(label="B",value=80)
|
| 649 |
+
out3=gr.Textbox(label="Result",lines=3)
|
| 650 |
+
gr.Button("Analyze RGB",variant="secondary").click(
|
| 651 |
+
lambda r,g,b:"Creatinine: "+str(max(0,round(0.02*(r-b)-0.5,2)))+" mg/dL"+chr(10)+("Normal" if max(0,round(0.02*(r-b)-0.5,2))<1.2 else "Borderline" if max(0,round(0.02*(r-b)-0.5,2))<1.5 else "CKD"),
|
| 652 |
+
inputs=[r,g,b],outputs=out3)
|
| 653 |
|
| 654 |
+
with gr.Tab("π¨ AI Image"):
|
| 655 |
with gr.Row():
|
| 656 |
+
img_prompt = gr.Textbox(placeholder="e.g. 27mm bileaflet mechanical heart valve cross section", label="Describe the image", lines=2, scale=4)
|
| 657 |
with gr.Column(scale=1):
|
| 658 |
+
img_btn = gr.Button("Generate Image", variant="primary")
|
| 659 |
img_status = gr.Textbox(label="Status", lines=1)
|
| 660 |
img_desc = gr.Textbox(label="AI Description", lines=2, interactive=False)
|
| 661 |
+
img_output = gr.Image(label="Generated Image", type="pil", height=420)
|
| 662 |
img_btn.click(generate_image, inputs=img_prompt, outputs=[img_output,img_status,img_desc])
|
| 663 |
|
| 664 |
+
with gr.Tab("π PIV Manual"):
|
| 665 |
with gr.Row():
|
| 666 |
with gr.Column():
|
| 667 |
+
v=gr.Number(label="Max Velocity m/s",value=1.8,info="Normal: 0.5-2.0")
|
| 668 |
+
s=gr.Number(label="Wall Shear Stress Pa",value=6.5,info="Normal: <5 Pa")
|
| 669 |
+
h=gr.Number(label="Heart Rate bpm",value=72,info="Normal: 60-100")
|
| 670 |
piv_out=gr.Textbox(label="Result",lines=4)
|
| 671 |
gr.Button("Analyze PIV",variant="primary").click(piv_manual,inputs=[v,s,h],outputs=piv_out)
|
| 672 |
|
| 673 |
+
with gr.Tab("π¬ TGT Manual"):
|
| 674 |
with gr.Row():
|
| 675 |
with gr.Column():
|
| 676 |
+
t1=gr.Number(label="TAT ng/mL",value=18,info="Normal: <8")
|
| 677 |
+
t2=gr.Number(label="PF1.2 nmol/L",value=2.5,info="Normal: <2.0")
|
| 678 |
+
t3=gr.Number(label="Free Hemoglobin mg/L",value=60,info="Normal: <20")
|
| 679 |
+
t4=gr.Number(label="Platelet Count",value=140,info="Normal: >150")
|
| 680 |
+
t5=gr.Number(label="Time minutes",value=40)
|
| 681 |
out2=gr.Textbox(label="Result",lines=6)
|
| 682 |
gr.Button("Analyze TGT",variant="primary").click(tgt_manual,inputs=[t1,t2,t3,t4,t5],outputs=out2)
|
| 683 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 684 |
demo.launch()
|