Remove minimap2 build step, download at runtime instead

Add sequencing pipeline (FASTQ -> QC -> alignment -> variant calling -> report)

Upload folder using huggingface_hub

Upload folder using huggingface_hub

feat: download pre-compiled PhyML from bioconda instead of source build

fix: remove PhyML source build, graceful missing-binary error

fix: add libtool ca-certificates, remove -j for low-mem

fix: PhyML build — disable-native, split RUN steps, verbose wget

feat: add phylo router (NJ/UPGMA/ML), local PhyML binary

Add domains, interactions, primers, structure_analysis routers

Initial upload: FastAPI backend